Wall clock time and date at job start Mon Mar 30 2020 04:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47265 * 74.89070 * 3 2 1 5 5 C 1.37098 * 120.00013 * 263.85103 * 4 3 2 6 6 H 1.08000 * 120.00283 * 201.15929 * 5 4 3 7 7 C 1.38951 * 119.99799 * 21.15869 * 5 4 3 8 8 N 1.31410 * 119.99957 * 10.72007 * 7 5 4 9 9 Si 1.86803 * 120.00049 * 190.72129 * 7 5 4 10 10 H 1.48504 * 109.46763 * 59.99876 * 9 7 5 11 11 H 1.48498 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47025 * 300.00297 * 9 7 5 13 13 C 1.34778 * 120.00120 * 83.84795 * 4 3 2 14 14 O 1.21297 * 119.99977 * 185.13703 * 13 4 3 15 15 C 1.50696 * 120.00083 * 5.14208 * 13 4 3 16 16 H 1.08998 * 109.47004 * 328.36719 * 15 13 4 17 17 C 1.53004 * 109.47120 * 208.36974 * 15 13 4 18 18 C 1.52997 * 109.46982 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47597 * 59.99401 * 18 17 15 20 20 C 1.52995 * 109.47316 * 300.00399 * 19 18 17 21 21 H 1.08998 * 109.46970 * 299.99599 * 20 19 18 22 22 N 1.46897 * 109.47438 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47481 * 59.99380 * 20 19 18 24 24 H 4.40641 * 5.51421 * 179.97438 * 4 1 2 25 25 H 1.08993 * 109.47163 * 314.88603 * 3 2 1 26 26 H 1.09003 * 109.46467 * 194.88644 * 3 2 1 27 27 H 0.97001 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46914 * 299.99512 * 17 15 13 29 29 H 1.08993 * 109.47120 * 59.99624 * 17 15 13 30 30 H 1.09005 * 109.47149 * 179.97438 * 18 17 15 31 31 H 1.08998 * 109.46962 * 299.99635 * 18 17 15 32 32 H 1.08995 * 109.47333 * 180.02562 * 19 18 17 33 33 H 1.09007 * 109.47009 * 60.00189 * 19 18 17 34 34 H 1.00902 * 111.00245 * 59.99593 * 22 20 19 35 35 H 1.00900 * 111.00258 * 183.95409 * 22 20 19 36 36 H 1.09010 * 109.47158 * 60.00337 * 23 20 19 37 37 H 1.08994 * 109.47724 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3591 -1.3334 5 6 3.4836 -1.6561 -1.6087 6 1 4.1451 -1.8737 -2.4342 7 6 2.9861 -2.6905 -0.8257 8 7 2.0243 -2.4564 0.0385 9 14 3.6847 -4.4141 -1.0015 10 1 5.1364 -4.3940 -0.6893 11 1 2.9891 -5.3284 -0.0605 12 1 3.4843 -4.8898 -2.3939 13 6 3.2409 0.5848 -2.2896 14 8 3.5558 0.2719 -3.4184 15 6 2.9686 2.0290 -1.9562 16 1 2.2125 2.0848 -1.1732 17 6 2.4638 2.7543 -3.2053 18 6 2.1880 4.2207 -2.8670 19 6 3.4780 4.8829 -2.3790 20 6 3.9828 4.1577 -1.1300 21 1 3.2269 4.2138 -0.3468 22 7 5.2217 4.7931 -0.6619 23 6 4.2587 2.6913 -1.4683 24 1 -1.0499 -0.0002 -0.0001 25 1 3.0097 -0.7243 0.7281 26 1 3.0089 0.9941 0.2640 27 1 1.6772 -3.1785 0.5854 28 1 3.2200 2.6985 -3.9884 29 1 1.5450 2.2822 -3.5531 30 1 1.8287 4.7375 -3.7569 31 1 1.4320 4.2769 -2.0837 32 1 3.2814 5.9275 -2.1376 33 1 4.2340 4.8268 -3.1622 34 1 5.0661 5.7632 -0.4319 35 1 5.6101 4.2931 0.1238 36 1 5.0147 2.6350 -2.2515 37 1 4.6187 2.1746 -0.5786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300839226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:26 Heat of formation + Delta-G solvation = 13.797532 kcal Electronic energy + Delta-G solvation = -19000.919143 eV Core-core repulsion = 16165.381529 eV Total energy + Delta-G solvation = -2835.537614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.47313 -37.45945 -35.14426 -33.28648 -32.11684 -31.24294 -30.47647 -27.82133 -26.44771 -24.90650 -22.75629 -21.69213 -19.71988 -18.60042 -17.81159 -16.63011 -16.08636 -15.47704 -15.19160 -14.82138 -14.56439 -14.12398 -13.87377 -13.63579 -13.11153 -12.42478 -12.34436 -12.18785 -12.10122 -11.52174 -11.34856 -11.31445 -11.02008 -10.84774 -10.52457 -10.36467 -10.33444 -10.14297 -9.93117 -9.36776 -9.26316 -8.81442 -8.65807 -8.28884 -7.80780 -6.26535 -3.87755 3.19226 3.25363 3.28713 3.69740 3.91664 4.09407 4.19969 4.51381 4.79797 4.93226 5.11407 5.16422 5.32670 5.45600 5.52436 5.55694 5.68715 5.75497 5.79235 5.82546 6.01107 6.16050 6.28312 6.31609 6.37663 6.44984 6.50938 6.68174 6.81017 6.85270 7.08684 7.19576 7.45691 7.56670 8.10105 8.47147 8.83764 9.17344 9.39114 9.95540 10.72843 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.006672 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.598012 B = 4195.758775 C = 4389.735106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.106 4.106 3 C 0.232 3.768 4 N -0.444 5.444 5 C -0.308 4.308 6 H 0.100 0.900 7 C 0.028 3.972 8 N -0.875 5.875 9 Si 0.927 3.073 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.460 3.540 14 O -0.581 6.581 15 C -0.099 4.099 16 H 0.079 0.921 17 C -0.098 4.098 18 C -0.117 4.117 19 C -0.109 4.109 20 C 0.092 3.908 21 H 0.034 0.966 22 N -0.848 5.848 23 C -0.098 4.098 24 H 0.198 0.802 25 H 0.115 0.885 26 H 0.057 0.943 27 H 0.268 0.732 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.336 0.664 35 H 0.341 0.659 36 H 0.075 0.925 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 11.782 2.876 12.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.108 4.108 3 C 0.109 3.891 4 N -0.162 5.162 5 C -0.436 4.436 6 H 0.118 0.882 7 C -0.174 4.174 8 N -0.514 5.514 9 Si 0.754 3.246 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.249 3.751 14 O -0.465 6.465 15 C -0.121 4.121 16 H 0.098 0.902 17 C -0.136 4.136 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.019 4.019 21 H 0.052 0.948 22 N -0.378 5.378 23 C -0.136 4.136 24 H 0.215 0.785 25 H 0.133 0.867 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.093 0.907 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.915 11.296 1.737 11.465 hybrid contribution -0.717 -0.930 1.072 1.590 sum 0.199 10.366 2.809 10.742 Atomic orbital electron populations 1.24257 0.95378 1.06878 1.02363 1.23241 0.94400 0.94911 0.98204 1.18312 0.84130 0.98633 0.88001 1.43667 1.56293 1.07976 1.08273 1.19642 1.26698 0.80985 1.16233 0.88210 1.25339 0.95271 0.99892 0.96947 1.69962 1.24138 1.33097 1.24213 0.85987 0.78868 0.81511 0.78265 1.19932 1.21015 1.19920 1.20069 0.83265 0.86760 0.85031 1.90509 1.52593 1.82601 1.20793 1.21182 0.97988 0.93893 0.99031 0.90243 1.21313 1.01624 0.93452 0.97170 1.21542 0.97030 0.96214 1.00736 1.21534 0.97596 0.98018 0.97600 1.21351 0.89961 0.94475 0.96074 0.94792 1.58707 1.30019 1.06406 1.42639 1.21449 0.97271 0.93175 1.01723 0.78488 0.86693 0.92533 0.92131 0.90928 0.92007 0.91870 0.92268 0.92699 0.91107 0.85148 0.84651 0.90660 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.68 19.25 29.55 0.57 -5.11 16 2 C -0.11 -2.41 10.77 -37.12 -0.40 -2.81 16 3 C 0.23 5.20 4.77 -6.83 -0.03 5.16 16 4 N -0.44 -11.28 2.60 -117.94 -0.31 -11.58 16 5 C -0.31 -8.54 9.30 -14.93 -0.14 -8.68 16 6 H 0.10 2.89 7.43 -52.49 -0.39 2.50 16 7 C 0.03 0.75 5.11 -17.47 -0.09 0.66 16 8 N -0.87 -23.07 9.04 55.50 0.50 -22.57 16 9 Si 0.93 20.80 29.57 -169.99 -5.03 15.78 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 13 C 0.46 11.25 6.62 -10.99 -0.07 11.17 16 14 O -0.58 -16.27 15.86 5.54 0.09 -16.19 16 15 C -0.10 -1.85 1.70 -91.77 -0.16 -2.00 16 16 H 0.08 1.46 6.03 -51.93 -0.31 1.15 16 17 C -0.10 -1.67 4.78 -26.73 -0.13 -1.80 16 18 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 19 C -0.11 -1.36 5.50 -26.73 -0.15 -1.50 16 20 C 0.09 1.20 3.25 -67.72 -0.22 0.98 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 22 N -0.85 -9.51 9.25 -4.67 -0.04 -9.55 16 23 C -0.10 -1.59 4.59 -26.73 -0.12 -1.71 16 24 H 0.20 3.39 7.80 -54.10 -0.42 2.97 16 25 H 0.12 2.72 6.35 -51.93 -0.33 2.39 16 26 H 0.06 1.07 5.87 -51.93 -0.30 0.76 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.07 1.33 7.86 -51.93 -0.41 0.92 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.34 3.06 9.04 -39.29 -0.36 2.70 16 35 H 0.34 3.49 8.99 -39.29 -0.35 3.14 16 36 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.06 1.00 7.43 -51.93 -0.39 0.62 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -30.99 301.29 -6.70 -37.69 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.36 Total: 9.22 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.10 Total: -7.34 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.15 Total: -43.70 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.99 -6.70 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300839226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.484 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds