Wall clock time and date at job start Mon Mar 30 2020 04:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47265 * 74.89070 * 3 2 1 5 5 C 1.37098 * 120.00013 * 263.85103 * 4 3 2 6 6 H 1.08000 * 120.00283 * 201.15929 * 5 4 3 7 7 C 1.38951 * 119.99799 * 21.15869 * 5 4 3 8 8 N 1.31410 * 119.99957 * 10.72007 * 7 5 4 9 9 Si 1.86803 * 120.00049 * 190.72129 * 7 5 4 10 10 H 1.48504 * 109.46763 * 59.99876 * 9 7 5 11 11 H 1.48498 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47025 * 300.00297 * 9 7 5 13 13 C 1.34778 * 120.00120 * 83.84795 * 4 3 2 14 14 O 1.21297 * 119.99977 * 185.13703 * 13 4 3 15 15 C 1.50696 * 120.00083 * 5.14208 * 13 4 3 16 16 H 1.08998 * 109.47004 * 328.36719 * 15 13 4 17 17 C 1.53004 * 109.47120 * 208.36974 * 15 13 4 18 18 C 1.52997 * 109.46982 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47597 * 59.99401 * 18 17 15 20 20 C 1.52995 * 109.47316 * 300.00399 * 19 18 17 21 21 H 1.08998 * 109.46970 * 299.99599 * 20 19 18 22 22 N 1.46897 * 109.47438 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47481 * 59.99380 * 20 19 18 24 24 H 4.40641 * 5.51421 * 179.97438 * 4 1 2 25 25 H 1.08993 * 109.47163 * 314.88603 * 3 2 1 26 26 H 1.09003 * 109.46467 * 194.88644 * 3 2 1 27 27 H 0.97001 * 119.99869 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46914 * 299.99512 * 17 15 13 29 29 H 1.08993 * 109.47120 * 59.99624 * 17 15 13 30 30 H 1.09005 * 109.47149 * 179.97438 * 18 17 15 31 31 H 1.08998 * 109.46962 * 299.99635 * 18 17 15 32 32 H 1.08995 * 109.47333 * 180.02562 * 19 18 17 33 33 H 1.09007 * 109.47009 * 60.00189 * 19 18 17 34 34 H 1.00902 * 111.00245 * 59.99593 * 22 20 19 35 35 H 1.00900 * 111.00258 * 183.95409 * 22 20 19 36 36 H 1.09010 * 109.47158 * 60.00337 * 23 20 19 37 37 H 1.08994 * 109.47724 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1346 -0.3591 -1.3334 5 6 3.4836 -1.6561 -1.6087 6 1 4.1451 -1.8737 -2.4342 7 6 2.9861 -2.6905 -0.8257 8 7 2.0243 -2.4564 0.0385 9 14 3.6847 -4.4141 -1.0015 10 1 5.1364 -4.3940 -0.6893 11 1 2.9891 -5.3284 -0.0605 12 1 3.4843 -4.8898 -2.3939 13 6 3.2409 0.5848 -2.2896 14 8 3.5558 0.2719 -3.4184 15 6 2.9686 2.0290 -1.9562 16 1 2.2125 2.0848 -1.1732 17 6 2.4638 2.7543 -3.2053 18 6 2.1880 4.2207 -2.8670 19 6 3.4780 4.8829 -2.3790 20 6 3.9828 4.1577 -1.1300 21 1 3.2269 4.2138 -0.3468 22 7 5.2217 4.7931 -0.6619 23 6 4.2587 2.6913 -1.4683 24 1 -1.0499 -0.0002 -0.0001 25 1 3.0097 -0.7243 0.7281 26 1 3.0089 0.9941 0.2640 27 1 1.6772 -3.1785 0.5854 28 1 3.2200 2.6985 -3.9884 29 1 1.5450 2.2822 -3.5531 30 1 1.8287 4.7375 -3.7569 31 1 1.4320 4.2769 -2.0837 32 1 3.2814 5.9275 -2.1376 33 1 4.2340 4.8268 -3.1622 34 1 5.0661 5.7632 -0.4319 35 1 5.6101 4.2931 0.1238 36 1 5.0147 2.6350 -2.2515 37 1 4.6187 2.1746 -0.5786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300839226.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:26 Heat of formation + Delta-G solvation = -6.916147 kcal Electronic energy + Delta-G solvation = -19001.817355 eV Core-core repulsion = 16165.381529 eV Total energy + Delta-G solvation = -2836.435827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12093 -38.90943 -37.08202 -34.48520 -33.95389 -33.05325 -31.87213 -28.95267 -28.29383 -26.77318 -24.23466 -22.92109 -21.00319 -20.23548 -19.66567 -18.44254 -17.91464 -16.74247 -16.53136 -16.23030 -15.94205 -15.74577 -15.58049 -14.97661 -14.64311 -14.14868 -14.01784 -13.82517 -13.42014 -13.19171 -12.84170 -12.79146 -12.53272 -12.47952 -12.19621 -12.11751 -11.55470 -11.50492 -11.27185 -11.17377 -11.04588 -10.61385 -10.20254 -9.80653 -9.54177 -8.28261 -5.98133 1.37471 1.39897 1.49746 1.88334 2.12613 2.32269 2.38657 3.06121 3.14929 3.53879 3.72173 3.83917 3.88810 4.10508 4.25893 4.28109 4.41367 4.47041 4.55174 4.57115 4.67629 4.70641 5.01764 5.03818 5.14408 5.21125 5.24893 5.27238 5.33185 5.42978 5.43803 5.53602 6.07303 6.30975 6.46265 6.70643 7.12962 7.15135 7.42318 7.99420 8.67877 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027949 B = 0.006672 C = 0.006377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.598012 B = 4195.758775 C = 4389.735106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.150 4.150 3 C 0.237 3.763 4 N -0.454 5.454 5 C -0.348 4.348 6 H 0.072 0.928 7 C 0.000 4.000 8 N -0.880 5.880 9 Si 0.987 3.013 10 H -0.266 1.266 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.447 3.553 14 O -0.631 6.631 15 C -0.086 4.086 16 H 0.089 0.911 17 C -0.097 4.097 18 C -0.107 4.107 19 C -0.107 4.107 20 C 0.100 3.900 21 H 0.048 0.952 22 N -0.852 5.852 23 C -0.092 4.092 24 H 0.233 0.767 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.272 0.728 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.353 0.647 35 H 0.347 0.653 36 H 0.051 0.949 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 13.271 4.292 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.151 4.151 3 C 0.114 3.886 4 N -0.172 5.172 5 C -0.476 4.476 6 H 0.089 0.911 7 C -0.203 4.203 8 N -0.518 5.518 9 Si 0.811 3.189 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.237 3.763 14 O -0.518 6.518 15 C -0.108 4.108 16 H 0.107 0.893 17 C -0.135 4.135 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.011 4.011 21 H 0.066 0.934 22 N -0.384 5.384 23 C -0.130 4.130 24 H 0.250 0.750 25 H 0.116 0.884 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.070 0.930 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.012 12.815 3.199 13.208 hybrid contribution -0.476 -1.427 0.626 1.629 sum -0.463 11.388 3.825 12.022 Atomic orbital electron populations 1.25145 0.96355 1.05053 1.00396 1.23496 0.95035 0.96621 0.99987 1.18316 0.84545 0.99745 0.85959 1.43890 1.56133 1.07520 1.09648 1.19583 1.28165 0.82991 1.16839 0.91051 1.26021 0.95208 1.02868 0.96165 1.70076 1.23908 1.34045 1.23798 0.85090 0.78725 0.77225 0.77823 1.19087 1.19508 1.20787 1.21129 0.81941 0.88986 0.84249 1.90460 1.54666 1.83858 1.22808 1.21127 0.99493 0.90146 1.00058 0.89316 1.21315 1.00001 0.96351 0.95822 1.21498 0.97959 0.92942 1.02136 1.21528 0.96639 0.99491 0.96811 1.21210 0.91039 0.91941 0.96888 0.93415 1.58613 1.29108 1.07451 1.43262 1.21384 0.95133 0.95827 1.00684 0.75020 0.88447 0.89284 0.91833 0.93028 0.93679 0.89975 0.90856 0.89666 0.92367 0.83296 0.83979 0.92973 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.05 19.25 74.32 1.43 -8.62 16 2 C -0.15 -6.68 10.77 31.12 0.34 -6.35 16 3 C 0.24 10.63 4.77 84.57 0.40 11.03 16 4 N -0.45 -23.82 2.60 -645.43 -1.68 -25.50 16 5 C -0.35 -20.07 9.30 84.04 0.78 -19.29 16 6 H 0.07 4.41 7.43 -2.91 -0.02 4.39 16 7 C 0.00 -0.02 5.11 84.93 0.43 0.42 16 8 N -0.88 -46.30 9.04 21.66 0.20 -46.10 16 9 Si 0.99 43.01 29.57 68.60 2.03 45.04 16 10 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.45 22.69 6.62 87.66 0.58 23.27 16 14 O -0.63 -37.40 15.86 -3.08 -0.05 -37.44 16 15 C -0.09 -3.24 1.70 -11.54 -0.02 -3.26 16 16 H 0.09 3.16 6.03 -2.39 -0.01 3.15 16 17 C -0.10 -3.32 4.78 30.59 0.15 -3.18 16 18 C -0.11 -2.56 5.92 30.59 0.18 -2.37 16 19 C -0.11 -2.33 5.50 30.59 0.17 -2.17 16 20 C 0.10 2.35 3.25 44.91 0.15 2.49 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 N -0.85 -16.87 9.25 -168.70 -1.56 -18.43 16 23 C -0.09 -2.94 4.59 30.59 0.14 -2.80 16 24 H 0.23 7.18 7.80 -4.42 -0.03 7.15 16 25 H 0.10 4.67 6.35 -2.39 -0.02 4.66 16 26 H 0.09 3.30 5.87 -2.39 -0.01 3.29 16 27 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 28 H 0.05 1.96 7.86 -2.38 -0.02 1.94 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.35 5.18 9.04 -89.69 -0.81 4.37 16 35 H 0.35 6.30 8.99 -89.69 -0.81 5.49 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.06 1.93 7.43 -2.39 -0.02 1.91 16 Total: -1.00 -69.45 301.29 3.12 -66.33 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.54 Total: 26.93 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 4.73 Total: -10.82 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -3.04 Total: -90.03 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.05 Total: -37.44 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.45 3.12 -66.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300839226.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds