Wall clock time and date at job start Mon Mar 30 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46840 * 2 1 4 4 N 1.46900 * 109.47591 * 119.99850 * 2 1 3 5 5 C 1.52996 * 109.47047 * 240.00360 * 2 1 3 6 6 N 1.46502 * 109.46825 * 299.99193 * 5 2 1 7 7 C 1.39673 * 119.99779 * 180.02562 * 6 5 2 8 8 C 1.39003 * 120.04435 * 359.72996 * 7 6 5 9 9 C 1.38148 * 120.06727 * 179.69614 * 8 7 6 10 10 C 1.38180 * 120.13714 * 0.59776 * 9 8 7 11 11 C 1.38914 * 120.07887 * 359.68021 * 10 9 8 12 12 O 1.35751 * 120.02735 * 179.97438 * 11 10 9 13 13 C 1.34833 * 116.99876 * 174.48369 * 12 11 10 14 14 H 1.07999 * 119.99607 * 5.06284 * 13 12 11 15 15 C 1.38647 * 120.00029 * 185.05903 * 13 12 11 16 16 N 1.31563 * 119.99734 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00035 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47362 * 90.00139 * 17 15 13 19 19 H 1.48502 * 109.46969 * 209.99714 * 17 15 13 20 20 H 1.48498 * 109.47090 * 329.99812 * 17 15 13 21 21 C 1.38751 * 120.03952 * 180.02562 * 7 6 5 22 22 H 1.08998 * 109.47233 * 299.99808 * 1 2 3 23 23 H 1.08999 * 109.47720 * 60.00056 * 1 2 3 24 24 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47230 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.47184 * 299.99954 * 3 2 1 27 27 H 1.08998 * 109.47051 * 60.00081 * 3 2 1 28 28 H 1.00898 * 110.99948 * 56.04629 * 4 2 1 29 29 H 1.00895 * 110.99944 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47460 * 59.99749 * 5 2 1 31 31 H 1.09007 * 109.46851 * 179.97438 * 5 2 1 32 32 H 0.96996 * 120.00093 * 0.02562 * 6 5 2 33 33 H 1.08001 * 119.96516 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.93482 * 180.27959 * 9 8 7 35 35 H 1.08001 * 119.95483 * 179.69678 * 10 9 8 36 36 H 0.97005 * 119.99458 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.07104 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0399 -0.7212 -1.2493 6 7 1.5517 -2.1024 -1.2492 7 6 1.8896 -2.9626 -2.2965 8 6 2.6844 -2.5074 -3.3421 9 6 3.0240 -3.3595 -4.3750 10 6 2.5650 -4.6628 -4.3786 11 6 1.7656 -5.1223 -3.3396 12 8 1.3148 -6.4028 -3.3445 13 6 0.6406 -6.8184 -2.2533 14 1 0.4096 -6.1199 -1.4627 15 6 0.2437 -8.1426 -2.1464 16 7 -0.4146 -8.5480 -1.0819 17 14 0.6438 -9.3509 -3.5136 18 1 1.9605 -9.9831 -3.2459 19 1 -0.4063 -10.3994 -3.5704 20 1 0.6951 -8.6308 -4.8113 21 6 1.4272 -4.2708 -2.2976 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6443 -1.6273 1.2559 29 1 3.0283 -0.7055 1.2229 30 1 1.6766 -0.2073 -2.1392 31 1 3.1300 -0.7207 -1.2495 32 1 0.9939 -2.4196 -0.5218 33 1 3.0404 -1.4877 -3.3447 34 1 3.6454 -3.0048 -5.1841 35 1 2.8283 -5.3250 -5.1901 36 1 -0.6926 -9.4744 -1.0073 37 1 0.8060 -4.6258 -1.4886 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309335505.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:48 Heat of formation + Delta-G solvation = -26.293241 kcal Electronic energy + Delta-G solvation = -18023.671848 eV Core-core repulsion = 15186.395767 eV Total energy + Delta-G solvation = -2837.276081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94336 -39.59342 -38.10184 -35.11278 -34.32852 -31.10131 -30.57896 -29.97726 -28.29526 -27.15580 -26.46824 -23.38262 -22.27344 -20.47859 -19.71777 -19.19943 -17.56485 -16.84789 -16.72875 -16.41972 -16.01023 -15.82607 -15.57235 -15.33022 -14.79966 -14.61522 -14.37570 -14.12173 -13.88967 -13.27126 -13.02395 -12.92756 -12.71553 -12.63607 -12.56705 -12.23799 -12.22497 -11.99289 -11.81538 -11.40297 -11.02906 -10.70668 -9.72437 -9.20210 -8.49552 -8.30022 -6.22187 0.70797 0.85237 1.31195 1.35894 1.52365 2.28568 2.46331 2.81432 3.13086 3.23694 3.50814 3.78557 3.92543 4.09826 4.20284 4.37063 4.55350 4.59337 4.62938 4.71612 4.80150 4.89110 4.97226 4.98203 5.00643 5.03562 5.27207 5.33642 5.41488 5.43941 5.72724 5.82057 5.88206 6.14021 6.16579 6.46319 6.54213 6.73638 6.85499 7.62027 8.62162 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028860 B = 0.005042 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.978026 B = 5552.235128 C = 6326.433021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.107 3.893 3 C -0.132 4.132 4 N -0.840 5.840 5 C 0.100 3.900 6 N -0.744 5.744 7 C 0.251 3.749 8 C -0.257 4.257 9 C -0.027 4.027 10 C -0.250 4.250 11 C 0.158 3.842 12 O -0.245 6.245 13 C -0.397 4.397 14 H 0.079 0.921 15 C 0.010 3.990 16 N -0.924 5.924 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.264 1.264 21 C -0.312 4.312 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.337 0.663 29 H 0.346 0.654 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.393 0.607 33 H 0.141 0.859 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.284 0.716 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 18.186 -1.139 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.190 4.190 4 N -0.370 5.370 5 C -0.025 4.025 6 N -0.375 5.375 7 C 0.147 3.853 8 C -0.280 4.280 9 C -0.045 4.045 10 C -0.271 4.271 11 C 0.109 3.891 12 O -0.152 6.152 13 C -0.473 4.473 14 H 0.096 0.904 15 C -0.188 4.188 16 N -0.565 5.565 17 Si 0.793 3.207 18 H -0.191 1.191 19 H -0.191 1.191 20 H -0.188 1.188 21 C -0.336 4.336 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.927 18.639 -0.797 19.575 hybrid contribution -0.155 -1.786 -0.274 1.813 sum 5.773 16.853 -1.071 17.846 Atomic orbital electron populations 1.21829 0.93786 1.01519 1.02723 1.21075 0.95563 0.95284 0.86722 1.21731 1.01494 0.92744 1.03011 1.59045 1.14451 1.23508 1.39999 1.22262 0.98737 0.81338 1.00210 1.44698 1.57744 1.10946 1.24130 1.17588 0.91426 0.87918 0.88400 1.20603 1.08787 1.01568 0.97040 1.20893 0.95529 0.90764 0.97327 1.20329 1.07343 0.98729 1.00715 1.19399 0.91795 0.83582 0.94366 1.83525 1.65829 1.25528 1.40360 1.20688 1.33625 0.96287 0.96749 0.90383 1.25275 0.95621 0.98189 0.99753 1.69735 1.38901 1.18779 1.29120 0.85219 0.78620 0.77750 0.79135 1.19053 1.19148 1.18784 1.20566 1.14065 0.95096 1.03835 0.91429 0.91282 0.94016 0.91803 0.90831 0.91463 0.84991 0.84035 0.91553 0.91913 0.77141 0.84153 0.82467 0.86036 0.90639 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.56 71.98 0.62 -2.00 16 2 C 0.11 1.83 0.96 3.53 0.00 1.83 16 3 C -0.13 -1.75 8.77 71.98 0.63 -1.12 16 4 N -0.84 -15.46 8.86 -151.57 -1.34 -16.80 16 5 C 0.10 2.01 3.98 86.38 0.34 2.35 16 6 N -0.74 -20.57 5.23 -339.47 -1.77 -22.34 16 7 C 0.25 8.89 6.65 38.20 0.25 9.15 16 8 C -0.26 -7.90 9.31 22.43 0.21 -7.69 16 9 C -0.03 -0.83 10.03 22.23 0.22 -0.61 16 10 C -0.25 -9.96 9.99 22.42 0.22 -9.74 16 11 C 0.16 7.70 6.64 22.56 0.15 7.85 16 12 O -0.25 -13.75 8.58 -22.78 -0.20 -13.95 16 13 C -0.40 -23.97 9.94 67.92 0.68 -23.29 16 14 H 0.08 4.95 5.43 -2.91 -0.02 4.93 16 15 C 0.01 0.57 5.49 84.83 0.47 1.04 16 16 N -0.92 -55.98 13.96 21.61 0.30 -55.67 16 17 Si 0.97 46.30 28.62 68.60 1.96 48.26 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 21 C -0.31 -14.14 9.01 22.52 0.20 -13.94 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.04 0.90 6.86 -2.39 -0.02 0.88 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.34 6.91 7.74 -89.70 -0.69 6.21 16 29 H 0.35 5.76 9.00 -89.70 -0.81 4.96 16 30 H 0.07 1.28 7.94 -2.39 -0.02 1.27 16 31 H 0.06 1.20 7.96 -2.38 -0.02 1.18 16 32 H 0.39 11.04 6.31 -92.71 -0.59 10.46 16 33 H 0.14 3.36 6.73 -2.91 -0.02 3.34 16 34 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.28 15.77 8.31 -92.70 -0.77 14.99 16 37 H 0.10 5.12 5.64 -2.91 -0.02 5.11 16 Total: -1.00 -66.98 304.64 1.97 -65.02 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.99 Total: 31.65 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 4.00 Total: -36.16 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -2.81 Total: -94.82 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.20 Total: -13.95 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.96 Total: 48.26 kcal Total: -66.98 1.97 -65.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309335505.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.725 kcal (2) G-P(sol) polarization free energy of solvation -66.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds