Wall clock time and date at job start Mon Mar 30 2020 04:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46901 * 109.47083 * 240.00204 * 2 1 3 14 14 C 1.46897 * 111.00370 * 84.99725 * 13 2 1 15 15 C 1.52995 * 109.47394 * 180.02562 * 14 13 2 16 16 H 1.09003 * 109.47067 * 305.00137 * 15 14 13 17 17 O 1.42898 * 109.47292 * 65.00042 * 15 14 13 18 18 C 1.50706 * 109.47143 * 185.00059 * 15 14 13 19 19 C 1.38650 * 120.78686 * 279.71895 * 18 15 14 20 20 C 1.38210 * 119.15827 * 179.75896 * 19 18 15 21 21 N 1.31867 * 120.76380 * 0.52701 * 20 19 18 22 22 C 1.31876 * 121.72737 * 359.74011 * 21 20 19 23 23 C 1.38199 * 120.76378 * 359.97438 * 22 21 20 24 24 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 25 25 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 27 27 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 28 28 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 29 29 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 30 30 H 1.00901 * 110.99772 * 208.95038 * 13 2 1 31 31 H 1.09006 * 109.47009 * 300.00297 * 14 13 2 32 32 H 1.08998 * 109.46949 * 59.99711 * 14 13 2 33 33 H 0.96701 * 114.00161 * 60.00223 * 17 15 14 34 34 H 1.07995 * 120.41818 * 0.02562 * 19 18 15 35 35 H 1.07997 * 119.61813 * 180.25100 * 20 19 18 36 36 H 1.07997 * 119.61698 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.42072 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.4855 0.3686 2.4956 11 1 6.5873 -1.7620 3.6486 12 1 6.6839 -1.6881 1.2263 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5949 -0.5332 -3.5745 16 1 3.5506 -1.0020 -3.3397 17 8 1.6492 -1.5386 -3.9441 18 6 2.7760 0.4310 -4.7185 19 6 1.6923 0.8392 -5.4809 20 6 1.8961 1.7285 -6.5191 21 7 3.1045 2.1792 -6.7938 22 6 4.1587 1.8085 -6.0935 23 6 4.0312 0.9265 -5.0372 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.7517 -1.7715 1.2055 28 1 1.6054 -0.2617 2.1369 29 1 2.6102 -1.9112 3.2555 30 1 2.9173 -1.1204 -1.0288 31 1 1.0870 0.6163 -2.5525 32 1 2.7587 1.0462 -2.1183 33 1 0.7741 -1.1926 -4.1669 34 1 0.7009 0.4704 -5.2635 35 1 1.0566 2.0546 -7.1152 36 1 5.1330 2.1986 -6.3485 37 1 4.8984 0.6263 -4.4677 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393809173.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:32 Heat of formation + Delta-G solvation = -32.804701 kcal Electronic energy + Delta-G solvation = -17967.813331 eV Core-core repulsion = 15130.254893 eV Total energy + Delta-G solvation = -2837.558439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49135 -37.89060 -36.15611 -33.16502 -32.75980 -31.39161 -30.72240 -27.26029 -26.95788 -23.79841 -23.53996 -22.75246 -21.40398 -19.72748 -17.76985 -16.81480 -16.74601 -15.93066 -15.80200 -15.22455 -14.55960 -14.36933 -14.09523 -13.82937 -13.71456 -13.64286 -12.96130 -12.44364 -12.20832 -11.90145 -11.49304 -11.42233 -11.28541 -10.99896 -10.84637 -10.53575 -10.35848 -10.15649 -9.76813 -9.66992 -9.40678 -9.35856 -8.59558 -8.38584 -7.78846 -6.40930 -4.11164 0.92878 1.01438 3.39495 3.40843 3.58879 3.59703 4.18556 4.25648 4.39391 4.49896 4.58393 4.85556 4.92999 5.04535 5.08441 5.23988 5.38850 5.42676 5.54548 5.73216 5.75719 5.78443 5.86276 6.05339 6.14359 6.21814 6.36782 6.48035 6.72652 6.76288 7.22225 7.36008 7.59023 7.75724 7.83129 8.07748 8.15155 8.38210 8.82532 9.61523 10.99711 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.023936 B = 0.005022 C = 0.004413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.494513 B = 5574.490331 C = 6343.595839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.029 0.971 4 C 0.007 3.993 5 C -0.606 4.606 6 H 0.044 0.956 7 C 0.019 3.981 8 N -0.909 5.909 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.036 3.964 15 C 0.148 3.852 16 H 0.111 0.889 17 O -0.537 6.537 18 C -0.065 4.065 19 C -0.166 4.166 20 C 0.099 3.901 21 N -0.490 5.490 22 C 0.099 3.901 23 C -0.163 4.163 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.018 0.982 28 H 0.012 0.988 29 H 0.270 0.730 30 H 0.357 0.643 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.369 0.631 34 H 0.133 0.867 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 5.946 -16.860 18.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.015 4.015 3 H 0.047 0.953 4 C -0.030 4.030 5 C -0.644 4.644 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.544 5.544 9 Si 0.894 3.106 10 H -0.216 1.216 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.307 5.307 14 C -0.095 4.095 15 C 0.088 3.912 16 H 0.129 0.871 17 O -0.342 6.342 18 C -0.074 4.074 19 C -0.186 4.186 20 C -0.058 4.058 21 N -0.199 5.199 22 C -0.057 4.057 23 C -0.183 4.183 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.178 0.822 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.217 0.783 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.657 5.445 -16.686 17.630 hybrid contribution -1.115 0.933 -0.069 1.455 sum -2.772 6.377 -16.755 18.141 Atomic orbital electron populations 1.21810 0.96642 1.01409 0.99522 1.21475 0.93293 0.95714 0.91028 0.95297 1.19401 0.96554 0.95652 0.91437 1.21960 0.91876 1.38940 1.11623 0.93749 1.25795 1.06787 0.93353 0.92670 1.70770 1.10542 1.39111 1.34014 0.83583 0.74509 0.76176 0.76292 1.21602 1.20689 1.21394 1.60507 1.35035 1.31361 1.03793 1.22573 1.00302 0.94607 0.91982 1.20902 0.94249 0.86983 0.89029 0.87080 1.86680 1.23707 1.34041 1.89723 1.21165 0.93704 0.96071 0.96432 1.21908 0.99642 0.99615 0.97404 1.22724 0.94791 0.93402 0.94882 1.67674 0.99497 1.24131 1.28615 1.22769 0.97664 0.93863 0.91448 1.22086 0.97911 0.99109 0.99156 0.94460 0.92521 0.93334 0.96374 0.96989 0.91941 0.82207 0.91377 0.94869 0.78342 0.84890 0.82736 0.82632 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.41 37.16 0.35 -2.03 16 2 C 0.09 1.93 2.59 -67.71 -0.18 1.76 16 3 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 4 C 0.01 0.17 3.88 -27.88 -0.11 0.06 16 5 C -0.61 -16.58 8.12 -34.44 -0.28 -16.86 16 6 H 0.04 1.18 7.49 -52.49 -0.39 0.79 16 7 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -27.51 13.65 55.43 0.76 -26.76 16 9 Si 1.07 24.80 29.90 -169.99 -5.08 19.71 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -12.58 6.26 -106.73 -0.67 -13.25 16 14 C 0.04 0.53 5.10 -3.83 -0.02 0.51 16 15 C 0.15 1.93 3.42 -27.88 -0.10 1.83 16 16 H 0.11 1.52 8.04 -51.93 -0.42 1.10 16 17 O -0.54 -7.25 13.14 -35.23 -0.46 -7.71 16 18 C -0.06 -0.74 5.00 -104.31 -0.52 -1.27 16 19 C -0.17 -1.67 9.41 -39.44 -0.37 -2.04 16 20 C 0.10 1.01 11.18 -17.55 -0.20 0.81 16 21 N -0.49 -5.79 10.36 -13.25 -0.14 -5.93 16 22 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 23 C -0.16 -1.78 9.78 -39.44 -0.39 -2.16 16 24 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 28 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 29 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 30 H 0.36 7.38 7.21 -39.29 -0.28 7.10 16 31 H 0.07 0.94 7.44 -51.93 -0.39 0.55 16 32 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.37 3.69 7.59 45.56 0.35 4.03 16 34 H 0.13 1.02 6.89 -52.49 -0.36 0.65 16 35 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -31.83 310.85 -7.75 -39.58 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -4.74 Total: 7.76 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.10 Total: -18.09 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.05 Total: -45.94 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.46 Total: -7.71 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.83 -7.75 -39.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393809173.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.780 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds