Wall clock time and date at job start Mon Mar 30 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47383 * 326.60860 * 3 2 1 5 5 C 1.37091 * 119.99924 * 95.42577 * 4 3 2 6 6 H 1.08004 * 120.00140 * 219.65442 * 5 4 3 7 7 C 1.38951 * 120.00267 * 39.65811 * 5 4 3 8 8 N 1.31405 * 119.99892 * 24.83818 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 204.83994 * 7 5 4 10 10 H 1.48493 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47021 * 239.99506 * 9 7 5 12 12 H 1.48506 * 109.46996 * 120.00177 * 9 7 5 13 13 C 1.34783 * 119.99844 * 275.42819 * 4 3 2 14 14 O 1.21296 * 119.99737 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99893 * 359.97438 * 13 4 3 16 16 C 1.53002 * 109.46948 * 180.02562 * 15 13 4 17 17 H 1.09003 * 110.01848 * 305.70377 * 16 15 13 18 18 C 1.53877 * 110.02935 * 67.09031 * 16 15 13 19 19 C 1.54268 * 106.59853 * 119.28750 * 18 16 15 20 20 C 1.54893 * 104.19471 * 23.60721 * 19 18 16 21 21 C 1.54264 * 110.03188 * 184.30855 * 16 15 13 22 22 H 1.08993 * 110.48804 * 335.78429 * 21 16 15 23 23 N 1.46896 * 110.48496 * 98.42819 * 21 16 15 24 24 H 4.40644 * 5.51276 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46985 * 206.60755 * 3 2 1 26 26 H 1.08996 * 109.47283 * 86.61094 * 3 2 1 27 27 H 0.97008 * 120.00219 * 5.58531 * 8 7 5 28 28 H 1.08999 * 109.47312 * 300.00034 * 15 13 4 29 29 H 1.09000 * 109.47531 * 60.00025 * 15 13 4 30 30 H 1.08998 * 110.03117 * 238.56732 * 18 16 15 31 31 H 1.08994 * 110.03398 * 359.95399 * 18 16 15 32 32 H 1.08993 * 110.49120 * 142.28696 * 19 18 16 33 33 H 1.09000 * 110.48578 * 264.93612 * 19 18 16 34 34 H 1.09000 * 110.75339 * 80.37649 * 20 19 18 35 35 H 1.09004 * 110.75619 * 203.55829 * 20 19 18 36 36 H 1.00906 * 111.00026 * 179.97438 * 23 21 16 37 37 H 1.00895 * 111.00366 * 303.95094 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1523 0.7601 5 6 3.4698 -2.3110 0.1084 6 1 3.2175 -3.2671 0.5426 7 6 4.1338 -2.2552 -1.1109 8 7 4.8614 -1.2042 -1.4154 9 14 3.9922 -3.6744 -2.3173 10 1 3.1214 -4.7297 -1.7401 11 1 5.3413 -4.2362 -2.5812 12 1 3.4020 -3.1858 -3.5894 13 6 3.2554 -1.0739 2.1003 14 8 3.6598 -2.0287 2.7297 15 6 2.8878 0.1999 2.8166 16 6 3.1161 0.0241 4.3192 17 1 2.5775 -0.8528 4.6784 18 6 4.6198 -0.1253 4.6099 19 6 5.0087 1.0475 5.5336 20 6 3.6783 1.4502 6.2169 21 6 2.6426 1.2820 5.0764 22 1 2.6555 2.1508 4.4184 23 7 1.2974 1.0736 5.6286 24 1 -1.0498 -0.0001 0.0003 25 1 3.0089 0.9197 0.4603 26 1 3.0094 -0.0599 -1.0258 27 1 5.0012 -0.5043 -0.7584 28 1 3.5090 1.0163 2.4482 29 1 1.8385 0.4304 2.6327 30 1 4.8107 -1.0743 5.1110 31 1 5.1867 -0.0734 3.6805 32 1 5.7363 0.7224 6.2772 33 1 5.4041 1.8783 4.9493 34 1 3.4514 0.7798 7.0459 35 1 3.7169 2.4847 6.5581 36 1 0.9801 1.8921 6.1262 37 1 0.6449 0.8152 4.9038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405246275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:15 Heat of formation + Delta-G solvation = -13.487904 kcal Electronic energy + Delta-G solvation = -18701.030097 eV Core-core repulsion = 15864.309297 eV Total energy + Delta-G solvation = -2836.720800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.02012 -39.25904 -37.21153 -34.52377 -33.63939 -33.08433 -32.29933 -28.48887 -27.88340 -26.99509 -25.28087 -21.83955 -21.18628 -20.36639 -19.89371 -18.78453 -17.69575 -17.31015 -16.63118 -16.39450 -16.00204 -15.77682 -15.56949 -15.07758 -14.69940 -14.62109 -14.31720 -14.00025 -13.49550 -13.25327 -12.72852 -12.55715 -12.13654 -12.01694 -11.97567 -11.92162 -11.75716 -11.65389 -11.45953 -11.36223 -11.22241 -10.83905 -10.36985 -9.87176 -9.60473 -8.79978 -6.21708 1.50255 1.50585 1.67949 1.78622 1.88489 1.98263 2.40640 2.91230 3.01256 3.50300 3.58142 3.60069 3.69523 3.92111 4.11139 4.22313 4.30462 4.36904 4.46491 4.52782 4.64209 4.70672 4.73763 4.84686 5.03642 5.08054 5.08571 5.18190 5.29819 5.36932 5.46960 5.78147 5.88314 6.27844 6.59005 6.64409 6.69290 6.87043 7.30834 7.86264 8.45509 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027142 B = 0.006389 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.380289 B = 4381.553674 C = 4962.722038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.233 4.233 3 C 0.202 3.798 4 N -0.468 5.468 5 C -0.422 4.422 6 H 0.047 0.953 7 C -0.022 4.022 8 N -0.888 5.888 9 Si 1.122 2.878 10 H -0.281 1.281 11 H -0.277 1.277 12 H -0.263 1.263 13 C 0.455 3.545 14 O -0.609 6.609 15 C -0.115 4.115 16 C -0.063 4.063 17 H 0.054 0.946 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.108 4.108 21 C 0.094 3.906 22 H 0.055 0.945 23 N -0.849 5.849 24 H 0.257 0.743 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.265 0.735 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.353 0.647 37 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 10.432 7.941 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.234 4.234 3 C 0.079 3.921 4 N -0.189 5.189 5 C -0.549 4.549 6 H 0.065 0.935 7 C -0.225 4.225 8 N -0.522 5.522 9 Si 0.942 3.058 10 H -0.206 1.206 11 H -0.203 1.203 12 H -0.188 1.188 13 C 0.246 3.754 14 O -0.493 6.493 15 C -0.155 4.155 16 C -0.083 4.083 17 H 0.073 0.927 18 C -0.146 4.146 19 C -0.156 4.156 20 C -0.145 4.145 21 C -0.017 4.017 22 H 0.073 0.927 23 N -0.380 5.380 24 H 0.273 0.727 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.167 0.833 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.356 8.890 7.151 12.604 hybrid contribution -0.630 0.800 0.680 1.225 sum -5.986 9.691 7.831 13.823 Atomic orbital electron populations 1.25699 0.96429 0.98601 0.99388 1.24000 0.95472 1.02050 1.01917 1.18512 0.84530 0.89688 0.99341 1.43755 1.57032 1.12910 1.05209 1.20161 1.41277 0.85933 1.07539 0.93528 1.27711 0.90616 1.04506 0.99646 1.70819 1.31423 1.10959 1.38962 0.82832 0.77155 0.71894 0.73914 1.20598 1.20279 1.18803 1.21423 0.80213 0.90725 0.83020 1.90494 1.50776 1.41508 1.66537 1.21739 1.02816 0.94894 0.96085 1.21446 0.96531 0.98420 0.91864 0.92726 1.21978 0.95030 0.98705 0.98845 1.22353 0.97877 0.97164 0.98207 1.22488 0.92929 1.02139 0.96991 1.22205 0.89777 0.94632 0.95090 0.92715 1.58689 1.03336 1.43175 1.32838 0.72666 0.88065 0.89230 0.92507 0.88635 0.89239 0.93943 0.94474 0.90711 0.90618 0.91296 0.89404 0.83326 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.70 19.25 74.32 1.43 -4.27 16 2 C -0.23 -9.04 12.99 31.13 0.40 -8.63 16 3 C 0.20 8.79 4.71 84.57 0.40 9.19 16 4 N -0.47 -24.41 2.23 -645.41 -1.44 -25.85 16 5 C -0.42 -24.79 8.79 84.04 0.74 -24.05 16 6 H 0.05 3.00 7.84 -2.91 -0.02 2.98 16 7 C -0.02 -1.21 4.78 84.93 0.41 -0.81 16 8 N -0.89 -49.91 12.33 21.66 0.27 -49.64 16 9 Si 1.12 49.23 29.99 68.60 2.06 51.28 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 13 C 0.46 22.81 7.11 87.65 0.62 23.44 16 14 O -0.61 -35.56 14.99 -3.08 -0.05 -35.61 16 15 C -0.12 -4.18 3.45 29.85 0.10 -4.08 16 16 C -0.06 -2.11 2.24 -10.07 -0.02 -2.14 16 17 H 0.05 2.17 7.85 -2.39 -0.02 2.15 16 18 C -0.11 -3.70 5.37 31.32 0.17 -3.53 16 19 C -0.12 -2.88 6.83 31.67 0.22 -2.67 16 20 C -0.11 -2.31 6.58 31.91 0.21 -2.10 16 21 C 0.09 2.26 3.54 46.02 0.16 2.43 16 22 H 0.06 1.19 7.85 -2.39 -0.02 1.17 16 23 N -0.85 -18.18 9.27 -164.13 -1.52 -19.70 16 24 H 0.26 5.12 7.80 -4.43 -0.03 5.08 16 25 H 0.10 3.74 6.67 -2.38 -0.02 3.73 16 26 H 0.09 4.31 5.82 -2.39 -0.01 4.29 16 27 H 0.26 14.98 7.32 -92.70 -0.68 14.30 16 28 H 0.10 3.11 7.41 -2.39 -0.02 3.10 16 29 H 0.09 2.95 7.54 -2.39 -0.02 2.93 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.44 7.36 -2.39 -0.02 1.43 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.35 5.58 9.08 -89.69 -0.81 4.76 16 37 H 0.34 7.26 9.02 -89.70 -0.81 6.45 16 Total: -1.00 -72.63 308.04 3.70 -68.94 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.46 Total: 27.80 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.84 Total: -17.21 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -2.70 Total: -95.20 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.05 Total: -35.61 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 2.06 Total: 51.28 kcal Total: -72.63 3.70 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405246275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.450 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds