Wall clock time and date at job start Mon Mar 30 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46863 * 2 1 4 4 O 1.42894 * 109.47121 * 120.00206 * 2 1 3 5 5 C 1.35737 * 117.00066 * 85.00976 * 4 2 1 6 6 C 1.39290 * 120.84331 * 174.03202 * 5 4 2 7 7 C 1.37953 * 119.08551 * 179.77257 * 6 5 4 8 8 N 1.31973 * 120.82649 * 0.51336 * 7 6 5 9 9 C 1.31943 * 121.86665 * 359.73761 * 8 7 6 10 10 C 1.50702 * 119.59174 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.46791 * 275.02063 * 10 9 8 12 12 C 1.46506 * 120.00169 * 269.99818 * 11 10 9 13 13 C 1.36940 * 120.00350 * 90.00291 * 11 10 9 14 14 H 1.07995 * 119.99505 * 22.79064 * 13 11 10 15 15 C 1.38814 * 120.00096 * 202.80180 * 13 11 10 16 16 N 1.31614 * 120.00072 * 13.54030 * 15 13 11 17 17 Si 1.86800 * 119.99599 * 193.54456 * 15 13 11 18 18 H 1.48496 * 109.47150 * 59.99752 * 17 15 13 19 19 H 1.48506 * 109.46977 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47047 * 299.99416 * 17 15 13 21 21 C 1.37996 * 120.81784 * 0.02562 * 9 8 7 22 22 H 1.08999 * 109.47011 * 299.99289 * 1 2 3 23 23 H 1.09009 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47499 * 59.99947 * 1 2 3 25 25 H 1.08999 * 109.46498 * 240.00587 * 2 1 3 26 26 H 1.08998 * 109.47108 * 60.00159 * 3 2 1 27 27 H 1.08999 * 109.46797 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47106 * 300.00294 * 3 2 1 29 29 H 1.07992 * 120.45482 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.58550 * 180.27125 * 7 6 5 31 31 H 1.08998 * 109.46832 * 35.02150 * 10 9 8 32 32 H 1.09003 * 109.47131 * 155.02216 * 10 9 8 33 33 H 1.08998 * 109.47352 * 93.32145 * 12 11 10 34 34 H 1.08998 * 109.47324 * 213.32217 * 12 11 10 35 35 H 1.09006 * 109.46769 * 333.32492 * 12 11 10 36 36 H 0.97004 * 119.99723 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.45514 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1126 -2.0251 1.0978 6 6 2.6828 -2.7508 2.1411 7 6 2.7682 -4.1235 2.0349 8 7 2.3274 -4.7473 0.9587 9 6 1.7859 -4.0946 -0.0521 10 6 1.2999 -4.8587 -1.2567 11 7 2.4177 -5.0817 -2.1770 12 6 2.7117 -4.0999 -3.2239 13 6 3.1877 -6.2079 -2.0589 14 1 2.7900 -7.0852 -1.5705 15 6 4.4796 -6.2218 -2.5666 16 7 5.0609 -5.0943 -2.9176 17 14 5.3929 -7.8407 -2.7518 18 1 4.6378 -8.7331 -3.6675 19 1 6.7441 -7.5855 -3.3126 20 1 5.5228 -8.4906 -1.4228 21 6 1.6601 -2.7207 -0.0203 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.0500 -2.2459 3.0223 30 1 3.2049 -4.6946 2.8410 31 1 0.8942 -5.8190 -0.9383 32 1 0.5225 -4.2851 -1.7614 33 1 3.4577 -3.3933 -2.8603 34 1 3.0963 -4.6128 -4.1054 35 1 1.7996 -3.5630 -3.4849 36 1 5.9635 -5.1041 -3.2727 37 1 1.2163 -2.1923 -0.8511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593005937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:18 Heat of formation + Delta-G solvation = 16.275726 kcal Electronic energy + Delta-G solvation = -18567.657218 eV Core-core repulsion = 15732.227067 eV Total energy + Delta-G solvation = -2835.430152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23788 -38.20568 -35.50769 -33.36305 -31.90572 -30.45586 -30.16610 -27.40074 -26.40282 -25.67948 -23.51954 -22.26329 -21.07665 -20.41704 -17.72240 -16.76676 -16.21992 -15.45435 -15.30825 -14.83936 -14.44930 -14.07581 -13.76349 -13.42956 -13.25067 -12.91358 -12.73115 -12.52174 -12.36508 -12.10021 -11.75380 -11.27121 -11.19260 -10.88622 -10.79580 -10.66145 -10.56317 -10.36890 -10.00580 -9.87061 -8.77818 -8.52964 -8.45470 -8.32185 -6.79500 -5.72598 -3.14793 1.72320 1.96070 3.27313 3.43681 3.47179 3.49220 4.38978 4.58809 4.72583 4.84422 5.00771 5.06395 5.23373 5.34863 5.42286 5.50543 5.56238 5.61093 5.68201 5.69292 5.78885 5.92501 5.97803 6.06841 6.16450 6.34346 6.44072 6.58587 6.67756 6.78678 7.13590 7.31749 7.62464 7.67097 7.86579 8.38986 8.83868 9.23482 9.83926 10.32163 11.33056 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026651 B = 0.006131 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.367300 B = 4565.787862 C = 4909.731088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.312 6.312 5 C 0.164 3.836 6 C -0.232 4.232 7 C 0.132 3.868 8 N -0.488 5.488 9 C 0.166 3.834 10 C 0.187 3.813 11 N -0.582 5.582 12 C 0.161 3.839 13 C -0.241 4.241 14 H 0.074 0.926 15 C 0.001 3.999 16 N -0.907 5.907 17 Si 0.908 3.092 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.259 4.259 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.151 0.849 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.026 0.974 34 H 0.049 0.951 35 H -0.001 1.001 36 H 0.253 0.747 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 10.344 5.695 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.018 3.982 3 C -0.204 4.204 4 O -0.225 6.225 5 C 0.111 3.889 6 C -0.254 4.254 7 C -0.025 4.025 8 N -0.200 5.200 9 C 0.025 3.975 10 C 0.059 3.941 11 N -0.303 5.303 12 C 0.017 3.983 13 C -0.371 4.371 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.552 5.552 17 Si 0.738 3.262 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.281 4.281 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.168 0.832 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.830 9.621 5.638 13.626 hybrid contribution 0.795 0.320 -0.091 0.862 sum -7.034 9.941 5.548 13.382 Atomic orbital electron populations 1.22369 0.95121 1.03276 1.02790 1.22442 0.94297 0.93590 0.87864 1.21837 1.02231 0.93560 1.02745 1.86031 1.81027 1.16573 1.38830 1.19241 0.93008 0.82333 0.94328 1.21268 1.08635 0.95176 1.00318 1.22561 0.93926 0.90494 0.95558 1.67633 1.11125 1.40748 1.00531 1.22713 0.90645 0.90658 0.93478 1.20043 0.90881 0.97359 0.85805 1.44213 1.34039 1.22730 1.29287 1.20849 0.94335 0.91750 0.91406 1.19250 0.93741 0.89531 1.34589 0.90847 1.25084 0.96066 0.96923 1.01693 1.70067 1.13570 1.24280 1.47270 0.86272 0.78682 0.83189 0.78070 1.20969 1.21747 1.20768 1.21985 1.10172 0.96600 0.99323 0.91707 0.91614 0.91041 0.90467 0.91696 0.91628 0.90559 0.85357 0.83169 0.91661 0.92722 0.95558 0.93191 0.98258 0.93728 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.19 37.16 0.34 -1.57 16 2 C 0.07 0.94 2.85 -26.73 -0.08 0.87 16 3 C -0.15 -1.48 9.56 37.16 0.36 -1.12 16 4 O -0.31 -4.94 9.82 -18.92 -0.19 -5.13 16 5 C 0.16 2.92 6.64 -38.82 -0.26 2.66 16 6 C -0.23 -4.00 10.08 -39.29 -0.40 -4.40 16 7 C 0.13 2.44 11.17 -17.60 -0.20 2.24 16 8 N -0.49 -10.67 10.27 -9.55 -0.10 -10.76 16 9 C 0.17 3.52 6.36 -82.63 -0.53 3.00 16 10 C 0.19 4.02 6.02 -5.20 -0.03 3.99 16 11 N -0.58 -14.88 2.91 -182.50 -0.53 -15.41 16 12 C 0.16 3.96 9.02 59.85 0.54 4.50 16 13 C -0.24 -6.78 9.66 -15.06 -0.15 -6.92 16 14 H 0.07 2.05 7.86 -52.49 -0.41 1.63 16 15 C 0.00 0.02 5.07 -17.43 -0.09 -0.07 16 16 N -0.91 -26.95 10.74 55.49 0.60 -26.36 16 17 Si 0.91 22.42 29.57 -169.99 -5.03 17.39 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.26 -4.86 7.93 -39.30 -0.31 -5.17 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.77 6.94 -51.92 -0.36 0.41 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 1.07 6.37 -51.93 -0.33 0.74 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 30 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 31 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 32 H 0.05 1.01 7.77 -51.93 -0.40 0.60 16 33 H 0.03 0.71 7.45 -51.93 -0.39 0.32 16 34 H 0.05 1.31 7.22 -51.93 -0.37 0.93 16 35 H 0.00 -0.02 7.85 -51.93 -0.41 -0.43 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.13 2.18 5.60 -52.49 -0.29 1.88 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -32.15 308.42 -6.87 -39.02 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.48 Total: -1.40 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.79 Total: -2.00 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.03 Total: -52.53 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.15 -6.87 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593005937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.295 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds