Wall clock time and date at job start Mon Mar 30 2020 04:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46863 * 2 1 4 4 O 1.42894 * 109.47121 * 120.00206 * 2 1 3 5 5 C 1.35737 * 117.00066 * 85.00976 * 4 2 1 6 6 C 1.39290 * 120.84331 * 174.03202 * 5 4 2 7 7 C 1.37953 * 119.08551 * 179.77257 * 6 5 4 8 8 N 1.31973 * 120.82649 * 0.51336 * 7 6 5 9 9 C 1.31943 * 121.86665 * 359.73761 * 8 7 6 10 10 C 1.50702 * 119.59174 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.46791 * 275.02063 * 10 9 8 12 12 C 1.46506 * 120.00169 * 269.99818 * 11 10 9 13 13 C 1.36940 * 120.00350 * 90.00291 * 11 10 9 14 14 H 1.07995 * 119.99505 * 22.79064 * 13 11 10 15 15 C 1.38814 * 120.00096 * 202.80180 * 13 11 10 16 16 N 1.31614 * 120.00072 * 13.54030 * 15 13 11 17 17 Si 1.86800 * 119.99599 * 193.54456 * 15 13 11 18 18 H 1.48496 * 109.47150 * 59.99752 * 17 15 13 19 19 H 1.48506 * 109.46977 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47047 * 299.99416 * 17 15 13 21 21 C 1.37996 * 120.81784 * 0.02562 * 9 8 7 22 22 H 1.08999 * 109.47011 * 299.99289 * 1 2 3 23 23 H 1.09009 * 109.46865 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47499 * 59.99947 * 1 2 3 25 25 H 1.08999 * 109.46498 * 240.00587 * 2 1 3 26 26 H 1.08998 * 109.47108 * 60.00159 * 3 2 1 27 27 H 1.08999 * 109.46797 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47106 * 300.00294 * 3 2 1 29 29 H 1.07992 * 120.45482 * 359.97438 * 6 5 4 30 30 H 1.08007 * 119.58550 * 180.27125 * 7 6 5 31 31 H 1.08998 * 109.46832 * 35.02150 * 10 9 8 32 32 H 1.09003 * 109.47131 * 155.02216 * 10 9 8 33 33 H 1.08998 * 109.47352 * 93.32145 * 12 11 10 34 34 H 1.08998 * 109.47324 * 213.32217 * 12 11 10 35 35 H 1.09006 * 109.46769 * 333.32492 * 12 11 10 36 36 H 0.97004 * 119.99723 * 180.02562 * 16 15 13 37 37 H 1.08001 * 120.45514 * 179.97438 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1126 -2.0251 1.0978 6 6 2.6828 -2.7508 2.1411 7 6 2.7682 -4.1235 2.0349 8 7 2.3274 -4.7473 0.9587 9 6 1.7859 -4.0946 -0.0521 10 6 1.2999 -4.8587 -1.2567 11 7 2.4177 -5.0817 -2.1770 12 6 2.7117 -4.0999 -3.2239 13 6 3.1877 -6.2079 -2.0589 14 1 2.7900 -7.0852 -1.5705 15 6 4.4796 -6.2218 -2.5666 16 7 5.0609 -5.0943 -2.9176 17 14 5.3929 -7.8407 -2.7518 18 1 4.6378 -8.7331 -3.6675 19 1 6.7441 -7.5855 -3.3126 20 1 5.5228 -8.4906 -1.4228 21 6 1.6601 -2.7207 -0.0203 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.6767 1.9564 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 3.0500 -2.2459 3.0223 30 1 3.2049 -4.6946 2.8410 31 1 0.8942 -5.8190 -0.9383 32 1 0.5225 -4.2851 -1.7614 33 1 3.4577 -3.3933 -2.8603 34 1 3.0963 -4.6128 -4.1054 35 1 1.7996 -3.5630 -3.4849 36 1 5.9635 -5.1041 -3.2727 37 1 1.2163 -2.1923 -0.8511 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593005937.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:18 Heat of formation + Delta-G solvation = -3.659043 kcal Electronic energy + Delta-G solvation = -18568.521655 eV Core-core repulsion = 15732.227067 eV Total energy + Delta-G solvation = -2836.294588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.59646 -39.54089 -37.38722 -34.47460 -33.70328 -31.98188 -31.78097 -28.35402 -28.08891 -27.63739 -24.82994 -24.02031 -22.47320 -21.82794 -19.07706 -18.71964 -17.66049 -16.91055 -16.69536 -16.46194 -15.85002 -15.58467 -15.37643 -15.08926 -14.64114 -14.55628 -13.95427 -13.73776 -13.42461 -13.28564 -13.09894 -13.00695 -12.75422 -12.57572 -12.37080 -12.21391 -12.03801 -11.95309 -11.90488 -11.67948 -10.65086 -10.28493 -9.94294 -9.71498 -8.83187 -7.84271 -5.30164 0.26293 0.51452 1.46010 1.48655 1.54736 2.10737 2.51377 2.93552 3.31723 3.61874 3.73125 3.83688 3.87410 3.97787 4.00074 4.13496 4.33132 4.43319 4.62012 4.68661 4.77754 4.79090 4.81144 4.84437 4.87891 4.97230 5.03941 5.18628 5.22110 5.26665 5.30769 5.61632 5.69693 5.73320 6.31145 6.33919 7.13621 7.34440 7.83005 8.25620 9.19579 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.026651 B = 0.006131 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.367300 B = 4565.787862 C = 4909.731088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.063 3.937 3 C -0.143 4.143 4 O -0.315 6.315 5 C 0.161 3.839 6 C -0.227 4.227 7 C 0.121 3.879 8 N -0.527 5.527 9 C 0.143 3.857 10 C 0.187 3.813 11 N -0.600 5.600 12 C 0.177 3.823 13 C -0.247 4.247 14 H 0.068 0.932 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.295 1.295 20 H -0.280 1.280 21 C -0.258 4.258 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.179 0.821 31 H 0.060 0.940 32 H 0.085 0.915 33 H -0.004 1.004 34 H 0.023 0.977 35 H 0.039 0.961 36 H 0.246 0.754 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 11.542 6.468 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 C -0.200 4.200 4 O -0.228 6.228 5 C 0.107 3.893 6 C -0.248 4.248 7 C -0.036 4.036 8 N -0.240 5.240 9 C 0.004 3.996 10 C 0.060 3.940 11 N -0.321 5.321 12 C 0.032 3.968 13 C -0.378 4.378 14 H 0.086 0.914 15 C -0.248 4.248 16 N -0.586 5.586 17 Si 0.796 3.204 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.206 1.206 21 C -0.280 4.280 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.176 0.824 30 H 0.196 0.804 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.014 0.986 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.808 10.831 6.441 15.375 hybrid contribution 0.956 0.079 -0.210 0.982 sum -7.852 10.910 6.231 14.816 Atomic orbital electron populations 1.22342 0.93366 1.02911 1.04400 1.22793 0.95796 0.94470 0.86225 1.21869 1.01696 0.91929 1.04461 1.86047 1.81001 1.15345 1.40401 1.19405 0.92444 0.83395 0.94040 1.21634 1.07204 0.94902 1.01029 1.23059 0.93686 0.91511 0.95335 1.67565 1.12376 1.42276 1.01807 1.22568 0.91617 0.91583 0.93880 1.20113 0.90049 0.97897 0.85919 1.44282 1.34224 1.22549 1.31062 1.20588 0.95177 0.90855 0.90153 1.19437 0.93994 0.90561 1.33761 0.91419 1.25780 0.96986 0.99783 1.02270 1.70233 1.13482 1.25909 1.48941 0.85329 0.77283 0.79838 0.77943 1.19966 1.22070 1.20644 1.22089 1.09907 0.95759 1.00197 0.90917 0.92925 0.88647 0.91869 0.90711 0.92524 0.88113 0.82418 0.80355 0.92162 0.89645 0.98575 0.95777 0.94279 0.94456 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.19 71.98 0.66 -2.58 16 2 C 0.06 1.46 2.85 30.60 0.09 1.55 16 3 C -0.14 -2.50 9.56 71.98 0.69 -1.81 16 4 O -0.32 -9.35 9.82 -90.61 -0.89 -10.24 16 5 C 0.16 5.47 6.64 22.76 0.15 5.62 16 6 C -0.23 -7.37 10.08 22.46 0.23 -7.14 16 7 C 0.12 4.30 11.17 84.60 0.95 5.24 16 8 N -0.53 -22.89 10.27 -184.11 -1.89 -24.78 16 9 C 0.14 6.03 6.36 42.49 0.27 6.30 16 10 C 0.19 7.94 6.02 85.63 0.52 8.45 16 11 N -0.60 -30.77 2.91 -731.30 -2.12 -32.90 16 12 C 0.18 8.75 9.02 127.77 1.15 9.91 16 13 C -0.25 -14.05 9.66 84.03 0.81 -13.24 16 14 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 15 C -0.05 -3.10 5.07 84.86 0.43 -2.67 16 16 N -0.94 -57.10 10.74 21.65 0.23 -56.87 16 17 Si 0.97 46.78 29.57 68.60 2.03 48.81 16 18 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 C -0.26 -9.40 7.93 22.45 0.18 -9.23 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.05 1.13 6.94 -2.38 -0.02 1.11 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.66 6.37 -2.39 -0.02 1.64 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 30 H 0.18 5.06 8.06 -2.91 -0.02 5.04 16 31 H 0.06 2.57 8.03 -2.39 -0.02 2.55 16 32 H 0.09 3.01 7.77 -2.39 -0.02 2.99 16 33 H 0.00 -0.23 7.45 -2.39 -0.02 -0.24 16 34 H 0.02 1.27 7.22 -2.39 -0.02 1.25 16 35 H 0.04 1.57 7.85 -2.38 -0.02 1.55 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.14 4.65 5.60 -2.91 -0.02 4.64 16 Total: -1.00 -69.90 308.42 4.52 -65.38 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.04 Total: 10.19 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 6.12 Total: 0.40 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -3.78 Total: -114.55 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.89 Total: -10.24 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -69.90 4.52 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593005937.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.724 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds