Wall clock time and date at job start Mon Mar 30 2020 04:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47444 * 2 1 4 4 C 1.50697 * 109.47407 * 239.99883 * 2 1 3 5 5 H 1.07997 * 119.99978 * 245.45682 * 4 2 1 6 6 C 1.37880 * 119.99884 * 65.17257 * 4 2 1 7 7 N 1.31513 * 119.99944 * 355.42013 * 6 4 2 8 8 Si 1.86804 * 119.99943 * 175.41306 * 6 4 2 9 9 H 1.48502 * 109.46818 * 95.00472 * 8 6 4 10 10 H 1.48502 * 109.47146 * 215.00215 * 8 6 4 11 11 H 1.48497 * 109.47107 * 335.00372 * 8 6 4 12 12 C 1.50702 * 109.47242 * 119.99714 * 2 1 3 13 13 O 1.21281 * 119.99867 * 119.99615 * 12 2 1 14 14 N 1.34770 * 119.99908 * 300.00479 * 12 2 1 15 15 C 1.46502 * 120.00122 * 359.97438 * 14 12 2 16 16 C 1.46503 * 119.99926 * 179.97438 * 14 12 2 17 17 C 1.50696 * 109.47247 * 89.99548 * 16 14 12 18 18 C 1.34851 * 125.88912 * 95.02411 * 17 16 14 19 19 C 1.40895 * 107.42067 * 180.02562 * 18 17 16 20 20 C 1.34861 * 107.40985 * 359.97438 * 19 18 17 21 21 N 1.36339 * 108.22014 * 359.73658 * 20 19 18 22 22 C 1.46498 * 125.63490 * 180.25734 * 21 20 19 23 23 H 1.09003 * 109.47108 * 295.17428 * 1 2 3 24 24 H 1.09009 * 109.46940 * 55.16794 * 1 2 3 25 25 H 1.08997 * 109.46958 * 175.16726 * 1 2 3 26 26 H 0.97000 * 119.99735 * 179.97438 * 7 6 4 27 27 H 1.09000 * 109.46700 * 90.00422 * 15 14 12 28 28 H 1.09003 * 109.47088 * 210.00224 * 15 14 12 29 29 H 1.08998 * 109.47180 * 330.00702 * 15 14 12 30 30 H 1.09001 * 109.47289 * 209.99602 * 16 14 12 31 31 H 1.08994 * 109.47002 * 329.99444 * 16 14 12 32 32 H 1.08003 * 126.29216 * 359.97438 * 18 17 16 33 33 H 1.07991 * 126.29567 * 180.02562 * 19 18 17 34 34 H 1.08002 * 125.88301 * 179.97438 * 20 19 18 35 35 H 1.09000 * 109.47509 * 270.19871 * 22 21 20 36 36 H 1.09000 * 109.47080 * 30.20054 * 22 21 20 37 37 H 1.09002 * 109.46856 * 150.19828 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6370 -1.1337 6 6 1.7895 -0.1804 -2.4799 7 7 1.0434 0.8954 -2.6042 8 14 2.5204 -0.9905 -3.9962 9 1 1.5263 -1.9216 -4.5877 10 1 2.8755 0.0524 -4.9920 11 1 3.7404 -1.7460 -3.6143 12 6 2.0323 -0.7103 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4545 15 6 0.8648 0.9415 2.5889 16 6 2.1946 -0.9408 3.6507 17 6 3.5223 -0.3578 4.0611 18 6 3.7099 0.6127 4.9784 19 6 5.0951 0.8585 5.0551 20 6 5.7012 0.0282 4.1821 21 7 4.7414 -0.7251 3.5737 22 6 4.9803 -1.7555 2.5601 23 1 -0.3633 0.4372 0.9301 24 1 -0.3633 0.5870 -0.8436 25 1 -0.3633 -1.0240 -0.0866 26 1 0.8728 1.2684 -3.4832 27 1 -0.1833 0.6439 2.6221 28 1 1.1227 1.4668 3.5086 29 1 1.0286 1.6002 1.7361 30 1 1.4766 -0.8152 4.4612 31 1 2.3153 -2.0020 3.4335 32 1 2.9398 1.1108 5.5487 33 1 5.5821 1.5786 5.6958 34 1 6.7640 -0.0323 3.9996 35 1 4.9566 -1.3027 1.5689 36 1 5.9561 -2.2112 2.7281 37 1 4.2059 -2.5195 2.6291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597386452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:30 Heat of formation + Delta-G solvation = 1.927559 kcal Electronic energy + Delta-G solvation = -18975.174891 eV Core-core repulsion = 16139.122556 eV Total energy + Delta-G solvation = -2836.052335 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.15271 -40.54800 -36.46352 -35.80969 -33.62182 -32.92059 -30.90108 -27.93558 -27.17737 -27.04550 -26.51877 -23.69708 -21.44558 -20.57508 -19.82254 -18.39091 -17.81559 -17.46239 -17.18368 -16.48545 -15.86563 -15.78067 -14.91261 -14.75695 -14.65829 -14.11085 -13.99125 -13.71112 -13.34957 -13.27825 -13.04970 -12.95217 -12.92641 -12.78505 -12.70616 -12.44806 -12.19877 -12.14090 -11.99640 -11.01468 -10.58754 -10.23279 -9.59162 -9.44310 -8.92776 -8.16556 -6.25182 1.25507 1.37772 1.38944 1.50871 1.93294 2.07154 2.20145 2.38841 2.58175 3.14200 3.92587 3.98041 4.05879 4.29658 4.37021 4.38475 4.46470 4.60261 4.73125 4.75818 4.76017 4.86233 4.87781 4.94348 5.02428 5.11197 5.40771 5.44065 5.48897 5.69406 5.75851 5.92678 6.17344 6.20716 6.39549 6.52483 6.60682 6.84232 7.40062 7.52525 8.90521 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.027604 B = 0.006600 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.109081 B = 4241.354494 C = 4780.701274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.029 3.971 3 H 0.031 0.969 4 C -0.525 4.525 5 H 0.050 0.950 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.518 3.482 13 O -0.572 6.572 14 N -0.617 5.617 15 C 0.080 3.920 16 C 0.182 3.818 17 C -0.022 4.022 18 C -0.195 4.195 19 C -0.216 4.216 20 C -0.029 4.029 21 N -0.447 5.447 22 C 0.088 3.912 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.019 0.981 26 H 0.263 0.737 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.153 0.847 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 0.396 14.632 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.008 3.992 3 H 0.049 0.951 4 C -0.563 4.563 5 H 0.069 0.931 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.308 3.692 13 O -0.452 6.452 14 N -0.350 5.350 15 C -0.062 4.062 16 C 0.059 3.941 17 C -0.135 4.135 18 C -0.220 4.220 19 C -0.240 4.240 20 C -0.160 4.160 21 N -0.122 5.122 22 C -0.054 4.054 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.171 0.829 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.081 -0.282 14.161 14.495 hybrid contribution 0.456 -0.286 -1.270 1.380 sum 3.537 -0.568 12.891 13.380 Atomic orbital electron populations 1.21794 0.95255 0.99630 1.01696 1.18714 0.95282 0.95334 0.89855 0.95110 1.21291 1.35178 1.08639 0.91197 0.93131 1.25613 0.95359 0.95756 1.01417 1.69990 1.38106 1.22794 1.24315 0.85616 0.78779 0.78353 0.79348 1.19955 1.20188 1.20288 1.21553 0.78330 0.83951 0.85323 1.90439 1.39337 1.28296 1.87094 1.48091 1.51822 1.30310 1.04818 1.22041 0.94436 0.86362 1.03355 1.19885 0.90521 0.95766 0.87887 1.21053 0.87350 1.03325 1.01727 1.20959 0.97181 1.00967 1.02902 1.21147 0.94211 1.04300 1.04342 1.22319 0.95359 0.98027 1.00253 1.44203 1.06548 1.29892 1.31537 1.21965 1.03312 0.90329 0.89757 0.91523 0.92143 0.96130 0.92735 0.90695 0.88987 0.92127 0.85443 0.91407 0.82927 0.82922 0.80391 0.93434 0.88379 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.61 71.98 0.62 -5.12 16 2 C 0.03 1.48 1.78 -12.29 -0.02 1.46 16 3 H 0.03 1.68 7.40 -2.39 -0.02 1.66 16 4 C -0.52 -30.32 8.30 25.60 0.21 -30.11 16 5 H 0.05 3.09 6.78 -2.91 -0.02 3.07 16 6 C 0.02 0.99 5.36 84.66 0.45 1.44 16 7 N -0.91 -51.92 11.58 21.45 0.25 -51.67 16 8 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 C 0.52 23.39 7.07 87.66 0.62 24.01 16 13 O -0.57 -28.24 11.15 -3.03 -0.03 -28.27 16 14 N -0.62 -21.31 2.86 -851.14 -2.43 -23.74 16 15 C 0.08 2.19 8.81 127.77 1.13 3.32 16 16 C 0.18 5.34 5.57 85.63 0.48 5.81 16 17 C -0.02 -0.66 6.47 41.08 0.27 -0.39 16 18 C -0.19 -5.22 10.76 22.14 0.24 -4.98 16 19 C -0.22 -5.60 10.86 22.14 0.24 -5.36 16 20 C -0.03 -0.79 11.43 83.22 0.95 0.16 16 21 N -0.45 -14.13 3.15 -533.25 -1.68 -15.81 16 22 C 0.09 2.82 9.34 127.77 1.19 4.02 16 23 H 0.07 2.43 4.45 -2.39 -0.01 2.41 16 24 H 0.06 3.04 6.44 -2.38 -0.02 3.02 16 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 27 H 0.07 1.78 6.86 -2.39 -0.02 1.76 16 28 H 0.09 1.95 8.07 -2.39 -0.02 1.93 16 29 H 0.06 1.92 6.06 -2.39 -0.01 1.91 16 30 H 0.13 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.07 2.20 6.49 -2.39 -0.02 2.18 16 32 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 34 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 35 H 0.05 1.85 7.22 -2.39 -0.02 1.83 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.08 2.73 6.04 -2.39 -0.01 2.72 16 Total: -1.00 -67.82 296.61 5.57 -62.25 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.06 Total: 15.85 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: 6.38 Total: -5.74 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -3.86 Total: -91.22 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.03 Total: -28.27 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.82 5.57 -62.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597386452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.180 kcal (2) G-P(sol) polarization free energy of solvation -67.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds