Wall clock time and date at job start Mon Mar 30 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.47197 * 109.47573 * 239.99595 * 2 1 3 5 5 N 2.60797 * 109.47551 * 239.99435 * 2 1 3 6 6 C 1.53000 * 109.46981 * 119.99260 * 2 1 3 7 7 N 1.46498 * 109.47677 * 296.06171 * 6 2 1 8 8 C 1.34779 * 119.99956 * 97.91486 * 7 6 2 9 9 O 1.21276 * 119.99930 * 177.32815 * 8 7 6 10 10 C 1.50701 * 119.99865 * 357.33607 * 8 7 6 11 11 H 1.08996 * 109.47266 * 316.47505 * 10 8 7 12 12 C 1.52998 * 109.47413 * 76.47990 * 10 8 7 13 13 C 1.50706 * 109.46747 * 196.47669 * 10 8 7 14 14 H 1.07998 * 120.00189 * 359.97438 * 13 10 8 15 15 C 1.37883 * 119.99628 * 179.97438 * 13 10 8 16 16 N 1.31512 * 119.99627 * 179.97438 * 15 13 10 17 17 Si 1.86793 * 120.00012 * 0.02562 * 15 13 10 18 18 H 1.48498 * 109.47361 * 90.00240 * 17 15 13 19 19 H 1.48509 * 109.47050 * 209.99915 * 17 15 13 20 20 H 1.48504 * 109.47297 * 329.99498 * 17 15 13 21 21 C 1.46494 * 120.00312 * 277.92468 * 7 6 2 22 22 C 1.52999 * 117.50390 * 197.08372 * 21 7 6 23 23 C 1.52997 * 117.50265 * 128.41663 * 21 7 6 24 24 H 1.09002 * 109.46928 * 53.17739 * 1 2 3 25 25 H 1.08995 * 109.47274 * 173.17559 * 1 2 3 26 26 H 1.08996 * 109.47473 * 293.17679 * 1 2 3 27 27 H 1.09008 * 109.47031 * 56.06358 * 6 2 1 28 28 H 1.09003 * 109.47765 * 176.05847 * 6 2 1 29 29 H 1.09002 * 109.46743 * 306.12801 * 12 10 8 30 30 H 1.08994 * 109.47402 * 66.12801 * 12 10 8 31 31 H 1.08999 * 109.47241 * 186.13726 * 12 10 8 32 32 H 0.97001 * 119.99970 * 180.02562 * 16 15 13 33 33 H 1.09004 * 115.54892 * 342.74876 * 21 7 6 34 34 H 1.09002 * 117.49214 * 359.97438 * 22 21 7 35 35 H 1.08995 * 117.50073 * 145.01465 * 22 21 7 36 36 H 1.09004 * 117.50007 * 214.97927 * 23 21 7 37 37 H 1.08998 * 117.50093 * 359.97438 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2296 -2.1292 6 6 2.0399 -0.7211 1.2493 7 7 1.6306 0.0222 2.4436 8 6 0.5359 -0.3581 3.1317 9 8 0.2245 0.2270 4.1474 10 6 -0.3012 -1.5104 2.6391 11 1 -0.4375 -1.4257 1.5610 12 6 0.4052 -2.8286 2.9619 13 6 -1.6457 -1.4813 3.3192 14 1 -1.8713 -0.7063 4.0367 15 6 -2.5878 -2.4443 3.0255 16 7 -3.7609 -2.4192 3.6193 17 14 -2.1973 -3.7852 1.7851 18 1 -1.5914 -4.9461 2.4853 19 1 -3.4481 -4.2131 1.1084 20 1 -1.2421 -3.2625 0.7752 21 6 2.4111 1.1788 2.8898 22 6 2.1951 1.6662 4.3239 23 6 1.6555 2.4840 3.1478 24 1 -0.3633 0.6159 -0.8227 25 1 -0.3633 -1.0203 -0.1221 26 1 -0.3634 0.4044 0.9447 27 1 1.6201 -1.7264 1.2854 28 1 3.1276 -0.7828 1.2149 29 1 1.4188 -2.8051 2.5617 30 1 0.4444 -2.9647 4.0426 31 1 -0.1442 -3.6551 2.5112 32 1 -4.4236 -3.0968 3.4130 33 1 3.4181 1.2530 2.4794 34 1 1.4720 1.1263 4.9353 35 1 3.0599 2.0613 4.8568 36 1 2.1656 3.4168 2.9075 37 1 0.5777 2.4822 2.9851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597437684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:07 Heat of formation + Delta-G solvation = 40.736510 kcal Electronic energy + Delta-G solvation = -19240.590817 eV Core-core repulsion = 16406.221364 eV Total energy + Delta-G solvation = -2834.369452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22225 -37.37852 -36.15531 -35.28286 -33.50754 -31.91029 -31.05581 -26.81294 -25.18834 -23.85080 -23.15323 -22.08475 -21.31904 -18.27755 -17.62510 -16.92465 -16.55040 -15.64382 -15.05039 -14.72630 -14.50145 -14.22433 -13.68880 -13.34777 -13.16286 -12.94107 -12.64002 -12.59226 -12.40815 -12.09514 -11.84657 -11.56004 -11.47644 -11.20668 -10.96748 -10.84177 -10.74004 -10.47995 -10.22287 -10.09497 -9.67613 -9.12433 -8.63380 -8.42539 -8.11238 -6.10608 -4.10704 2.63250 2.73401 3.18838 3.19738 3.24167 3.31404 3.33124 3.97263 4.21394 4.32423 4.68113 4.88076 5.03114 5.11475 5.13421 5.19837 5.35599 5.43062 5.56490 5.63968 5.82335 5.84490 5.97212 5.98835 6.07323 6.21173 6.31450 6.39598 6.40989 6.59078 6.71256 7.09164 7.13311 7.47277 7.49754 7.84663 8.46851 8.96499 9.06854 9.48224 11.02308 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.010222 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.680095 B = 2738.436333 C = 3906.313719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 H 0.117 0.883 4 C 0.218 3.782 5 N -0.440 5.440 6 C 0.116 3.884 7 N -0.597 5.597 8 C 0.535 3.465 9 O -0.515 6.515 10 C -0.018 4.018 11 H 0.063 0.937 12 C -0.151 4.151 13 C -0.504 4.504 14 H 0.092 0.908 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.069 3.931 22 C -0.198 4.198 23 C -0.192 4.192 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.121 0.879 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.495 5.610 -5.068 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.038 4.038 3 H 0.135 0.865 4 C -0.100 4.100 5 N -0.116 5.116 6 C -0.010 4.010 7 N -0.330 5.330 8 C 0.326 3.674 9 O -0.389 6.389 10 C -0.040 4.040 11 H 0.081 0.919 12 C -0.209 4.209 13 C -0.542 4.542 14 H 0.110 0.890 15 C -0.128 4.128 16 N -0.531 5.531 17 Si 0.708 3.292 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.192 1.192 21 C -0.036 4.036 22 C -0.236 4.236 23 C -0.231 4.231 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.692 5.009 -5.875 14.856 hybrid contribution 0.054 -0.586 -0.456 0.744 sum 12.746 4.423 -6.331 14.903 Atomic orbital electron populations 1.22095 0.91015 1.03827 1.04333 1.19414 0.98374 0.99546 0.86478 0.86521 1.29104 0.92977 0.93527 0.94421 1.81200 1.09464 1.09431 1.11483 1.21638 1.00328 0.96517 0.82468 1.47508 1.28152 1.30160 1.27154 1.21398 0.78459 0.84778 0.82735 1.90368 1.68666 1.55316 1.24545 1.19708 0.95536 0.89168 0.99548 0.91946 1.22247 0.97704 0.98412 1.02498 1.20871 0.94057 1.14158 1.25111 0.89030 1.24934 0.94919 0.97287 0.95687 1.69869 1.05633 1.35142 1.42499 0.87024 0.77018 0.83023 0.82123 1.20476 1.22220 1.19224 1.21580 0.95045 0.86755 1.00219 1.24091 1.04127 1.03221 0.92118 1.23244 1.01250 0.94290 1.04268 0.91721 0.90864 0.89200 0.87909 0.90017 0.94477 0.91907 0.93299 0.92510 0.86177 0.83461 0.90122 0.89226 0.88428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 7.58 37.15 0.28 -1.72 16 2 C -0.02 -0.16 2.96 -93.41 -0.28 -0.44 16 3 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.22 2.70 14.64 -20.76 -0.30 2.40 16 5 N -0.44 -6.51 18.54 42.15 0.78 -5.73 16 6 C 0.12 1.36 4.64 -4.04 -0.02 1.34 16 7 N -0.60 -8.64 2.57 -166.11 -0.43 -9.07 16 8 C 0.53 10.37 5.46 -10.98 -0.06 10.31 16 9 O -0.51 -11.62 11.47 5.56 0.06 -11.56 16 10 C -0.02 -0.39 1.05 -92.92 -0.10 -0.48 16 11 H 0.06 1.24 2.77 -51.93 -0.14 1.09 16 12 C -0.15 -2.96 8.16 37.16 0.30 -2.66 16 13 C -0.50 -13.56 8.93 -34.44 -0.31 -13.87 16 14 H 0.09 2.82 7.12 -52.49 -0.37 2.45 16 15 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 16 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 17 Si 0.88 20.47 24.31 -169.99 -4.13 16.33 16 18 H -0.28 -6.37 6.93 56.52 0.39 -5.98 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -5.65 6.53 56.52 0.37 -5.28 16 21 C 0.07 0.86 6.62 -67.94 -0.45 0.42 16 22 C -0.20 -2.83 9.64 -26.69 -0.26 -3.09 16 23 C -0.19 -2.51 9.90 -26.69 -0.26 -2.77 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.06 6.84 -51.93 -0.36 0.70 16 26 H 0.09 1.36 5.84 -51.93 -0.30 1.05 16 27 H 0.10 1.34 4.35 -51.92 -0.23 1.11 16 28 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.04 0.58 6.03 -51.93 -0.31 0.27 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.99 3.46 -51.93 -0.18 0.81 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.15 2.69 4.99 -53.25 -0.27 2.42 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.53 7.80 -51.93 -0.40 1.12 16 LS Contribution 290.93 15.07 4.38 4.38 Total: -1.00 -31.27 290.93 -4.80 -36.08 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.70 Total: 4.04 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.55 Total: -8.64 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 1.13 Total: -40.64 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.13 Total: 16.33 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.27 -4.80 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597437684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds