Wall clock time and date at job start Mon Mar 30 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46816 * 2 1 4 4 C 1.52997 * 109.47389 * 239.99817 * 2 1 3 5 5 C 1.47202 * 109.46948 * 64.99787 * 4 2 1 6 6 N 3.43550 * 86.99840 * 280.50495 * 2 1 3 7 7 C 1.50701 * 109.47284 * 119.99569 * 2 1 3 8 8 O 1.21274 * 119.99978 * 100.06485 * 7 2 1 9 9 N 1.34777 * 119.99898 * 280.06363 * 7 2 1 10 10 C 1.46925 * 120.63367 * 354.61564 * 9 7 2 11 11 C 1.53193 * 108.77767 * 233.62789 * 10 9 7 12 12 C 1.53040 * 109.31080 * 305.36385 * 11 10 9 13 13 C 1.53046 * 109.53650 * 61.36809 * 12 11 10 14 14 H 1.08993 * 109.52717 * 58.59662 * 13 12 11 15 15 C 1.50704 * 109.49341 * 178.68273 * 13 12 11 16 16 H 1.07996 * 119.99869 * 119.83819 * 15 13 12 17 17 C 1.37877 * 120.00130 * 300.10358 * 15 13 12 18 18 N 1.31515 * 119.99615 * 359.73615 * 17 15 13 19 19 Si 1.86793 * 120.00205 * 179.72684 * 17 15 13 20 20 H 1.48500 * 109.46991 * 60.00467 * 19 17 15 21 21 H 1.48506 * 109.47194 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47354 * 300.00501 * 19 17 15 23 23 C 1.46936 * 120.62843 * 174.63467 * 9 7 2 24 24 H 1.08995 * 109.47183 * 293.79188 * 1 2 3 25 25 H 1.09000 * 109.47212 * 53.79751 * 1 2 3 26 26 H 1.09005 * 109.46606 * 173.79980 * 1 2 3 27 27 H 1.08997 * 109.47282 * 184.99825 * 4 2 1 28 28 H 1.08996 * 109.47192 * 304.99842 * 4 2 1 29 29 H 1.09000 * 109.58573 * 353.41647 * 10 9 7 30 30 H 1.09005 * 109.58350 * 113.84229 * 10 9 7 31 31 H 1.09001 * 109.49565 * 65.31691 * 11 10 9 32 32 H 1.08997 * 109.49576 * 185.38310 * 11 10 9 33 33 H 1.08993 * 109.46391 * 301.34298 * 12 11 10 34 34 H 1.09008 * 109.45764 * 181.38105 * 12 11 10 35 35 H 0.97002 * 120.00285 * 179.97438 * 18 17 15 36 36 H 1.09002 * 109.58303 * 6.58611 * 23 9 7 37 37 H 1.08994 * 109.70371 * 246.23086 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6506 0.0389 -2.4480 6 7 1.3501 0.6255 -3.3733 7 6 2.0324 -0.7103 1.2305 8 8 2.4075 -1.8611 1.1556 9 7 2.0647 -0.0666 2.4142 10 6 1.7258 1.3605 2.4998 11 6 2.8735 2.0990 3.1956 12 6 3.1554 1.4378 4.5467 13 6 3.5798 -0.0160 4.3264 14 1 4.4669 -0.0447 3.6938 15 6 3.8883 -0.6567 5.6551 16 1 3.3286 -1.5210 5.9807 17 6 4.8815 -0.1362 6.4573 18 7 5.5631 0.9162 6.0607 19 14 5.2588 -0.9257 8.1077 20 1 5.6696 -2.3374 7.8987 21 1 6.3597 -0.1826 8.7718 22 1 4.0469 -0.8846 8.9647 23 6 2.4400 -0.7786 3.6435 24 1 -0.3633 0.4146 0.9403 25 1 -0.3633 0.6070 -0.8292 26 1 -0.3633 -1.0217 -0.1110 27 1 3.1263 -0.7994 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.5866 1.7638 1.4968 30 1 0.8089 1.4843 3.0762 31 1 3.7672 2.0509 2.5734 32 1 2.5941 3.1410 3.3512 33 1 2.2541 1.4642 5.1590 34 1 3.9553 1.9766 5.0547 35 1 6.2617 1.2827 6.6252 36 1 2.7722 -1.7866 3.3950 37 1 1.5824 -0.8313 4.3140 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:27 Heat of formation + Delta-G solvation = -26.718898 kcal Electronic energy + Delta-G solvation = -18516.327188 eV Core-core repulsion = 15679.032650 eV Total energy + Delta-G solvation = -2837.294538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05710 -37.34877 -36.63263 -34.40419 -33.39850 -31.38599 -30.24866 -28.24888 -25.45711 -25.04176 -23.00651 -21.73512 -19.70396 -18.35072 -17.95215 -16.50033 -16.15985 -15.67505 -15.35744 -14.75185 -14.32378 -13.90930 -13.66486 -13.37684 -13.20413 -12.84383 -12.72132 -12.60744 -12.31661 -12.16159 -12.01017 -11.95763 -11.26267 -11.19585 -10.97458 -10.86896 -10.76821 -10.32854 -9.98970 -9.85378 -9.52368 -9.31561 -8.86724 -8.41865 -7.97067 -6.04875 -4.12211 2.55419 2.66425 2.91863 3.29526 3.33948 3.34457 3.40081 3.93204 4.40192 4.51919 4.75322 4.78518 5.00754 5.24802 5.36842 5.45636 5.51532 5.54708 5.57976 5.72356 5.78973 5.97437 6.07050 6.28330 6.33990 6.42937 6.60950 6.74616 6.89884 7.11507 7.28598 7.41530 7.65483 7.85822 7.94155 8.03779 8.33111 8.52291 8.91174 9.52957 11.00568 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.041215 B = 0.004915 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.200362 B = 5694.959195 C = 5902.034456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.012 4.012 5 C 0.214 3.786 6 N -0.444 5.444 7 C 0.517 3.483 8 O -0.548 6.548 9 N -0.599 5.599 10 C 0.106 3.894 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.040 3.960 14 H 0.030 0.970 15 C -0.516 4.516 16 H 0.057 0.943 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.116 3.884 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.095 0.905 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.211 1.260 -8.610 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 H 0.120 0.880 4 C -0.052 4.052 5 C -0.103 4.103 6 N -0.121 5.121 7 C 0.303 3.697 8 O -0.426 6.426 9 N -0.330 5.330 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.151 4.151 13 C 0.021 3.979 14 H 0.048 0.952 15 C -0.554 4.554 16 H 0.075 0.925 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.005 4.005 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.314 1.648 -9.957 13.076 hybrid contribution 0.398 -0.401 1.374 1.485 sum -7.915 1.247 -8.584 11.743 Atomic orbital electron populations 1.21804 0.92216 1.03271 1.02956 1.21281 0.98262 1.01238 0.92460 0.88034 1.19149 1.03967 0.97900 0.84169 1.29204 0.92999 0.93677 0.94467 1.81219 1.09513 1.09724 1.11637 1.20135 0.78484 0.86828 0.84221 1.90682 1.48759 1.17850 1.85336 1.48272 1.66091 1.10505 1.08135 1.21840 0.98620 0.80665 1.00576 1.22014 0.97253 0.98224 0.99929 1.21638 1.01187 0.99179 0.93105 1.18964 0.92209 0.91472 0.95228 0.95187 1.21037 1.18353 1.13501 1.02557 0.92522 1.24927 0.95744 0.94922 0.98140 1.69857 1.22768 1.22555 1.37569 0.86643 0.77897 0.79523 0.83860 1.20198 1.21323 1.20271 1.22026 0.98852 0.96952 0.82627 0.91292 0.91817 0.91370 0.86627 0.86263 0.90928 0.91780 0.92299 0.92419 0.94571 0.88631 0.92899 0.90145 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.78 37.16 0.33 -0.99 16 2 C -0.11 -1.16 1.86 -91.77 -0.17 -1.33 16 3 H 0.10 0.97 6.30 -51.93 -0.33 0.64 16 4 C -0.01 -0.11 4.57 -29.52 -0.13 -0.24 16 5 C 0.21 2.29 14.51 -20.76 -0.30 1.99 16 6 N -0.44 -5.89 18.54 42.15 0.78 -5.11 16 7 C 0.52 7.87 6.85 -10.98 -0.08 7.79 16 8 O -0.55 -10.13 15.55 5.56 0.09 -10.04 16 9 N -0.60 -9.85 2.97 -172.76 -0.51 -10.36 16 10 C 0.11 1.46 5.76 -3.71 -0.02 1.44 16 11 C -0.14 -2.24 6.08 -26.61 -0.16 -2.40 16 12 C -0.11 -2.41 4.96 -26.69 -0.13 -2.54 16 13 C 0.04 0.94 2.25 -91.65 -0.21 0.74 16 14 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.52 -13.50 8.57 -34.44 -0.29 -13.80 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.33 11.31 55.43 0.63 -23.71 16 19 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.12 2.33 5.67 -3.70 -0.02 2.31 16 24 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 25 H 0.06 0.53 7.59 -51.93 -0.39 0.13 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.12 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.07 0.78 5.43 -51.93 -0.28 0.50 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.10 2.34 6.04 -51.92 -0.31 2.03 16 35 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.08 1.74 7.00 -51.93 -0.36 1.37 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -29.72 303.60 -6.17 -35.89 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.42 Total: -1.42 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -1.29 Total: -5.41 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.89 Total: -39.18 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.72 -6.17 -35.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.166 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds