Wall clock time and date at job start Mon Mar 30 2020 04:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46436 * 183.47009 * 3 2 1 5 5 C 1.37107 * 119.99827 * 272.07874 * 4 3 2 6 6 H 1.07997 * 119.99888 * 193.08148 * 5 4 3 7 7 C 1.38949 * 119.99807 * 13.07449 * 5 4 3 8 8 N 1.31412 * 119.99941 * 18.89774 * 7 5 4 9 9 Si 1.86799 * 120.00037 * 198.88932 * 7 5 4 10 10 H 1.48495 * 109.47017 * 60.00582 * 9 7 5 11 11 H 1.48494 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47098 * 300.00374 * 9 7 5 13 13 C 1.34776 * 120.00439 * 92.08338 * 4 3 2 14 14 O 1.21293 * 119.99691 * 4.90441 * 13 4 3 15 15 C 1.50694 * 120.00173 * 184.90379 * 13 4 3 16 16 C 1.53006 * 110.28673 * 57.18342 * 15 13 4 17 17 C 1.54380 * 110.32819 * 295.05413 * 15 13 4 18 18 N 1.48558 * 104.59702 * 264.85534 * 17 15 13 19 19 C 1.48559 * 104.21965 * 320.51578 * 18 17 15 20 20 C 1.54267 * 110.41091 * 179.36453 * 15 13 4 21 21 H 1.08999 * 110.32200 * 0.05116 * 20 15 13 22 22 C 1.52995 * 110.32523 * 237.83735 * 20 15 13 23 23 H 4.40630 * 5.51343 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47635 * 63.46897 * 3 2 1 25 25 H 1.08999 * 109.47098 * 303.46319 * 3 2 1 26 26 H 0.97000 * 120.00032 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46692 * 296.33867 * 16 15 13 28 28 H 1.08999 * 109.46774 * 176.33939 * 16 15 13 29 29 H 1.09002 * 109.47143 * 56.33931 * 16 15 13 30 30 H 1.09005 * 110.40851 * 23.63442 * 17 15 13 31 31 H 1.09000 * 110.41279 * 146.07035 * 17 15 13 32 32 H 1.00898 * 110.99857 * 200.95824 * 18 17 15 33 33 H 1.09000 * 110.40826 * 158.26247 * 19 18 17 34 34 H 1.09003 * 110.41143 * 280.57938 * 19 18 17 35 35 H 1.08999 * 109.47214 * 60.00017 * 22 20 15 36 36 H 1.08999 * 109.47111 * 179.97438 * 22 20 15 37 37 H 1.09003 * 109.47216 * 300.00308 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3797 0.0836 5 6 3.3211 2.1110 -1.0608 6 1 3.8726 3.0389 -1.0245 7 6 2.8016 1.6584 -2.2675 8 7 1.8407 0.7620 -2.2742 9 14 3.4690 2.3242 -3.8801 10 1 4.9195 2.0217 -3.9781 11 1 2.7523 1.6863 -5.0134 12 1 3.2654 3.7943 -3.9308 13 6 3.3979 1.9294 1.2854 14 8 3.3178 1.2560 2.2911 15 6 3.7930 3.3805 1.3798 16 6 2.7133 4.2660 0.7544 17 6 5.1493 3.6137 0.6802 18 7 6.1531 3.5300 1.7722 19 6 5.5053 4.2204 2.9170 20 6 4.0272 3.7797 2.8514 21 1 3.8574 2.9257 3.5070 22 6 3.1090 4.9402 3.2398 23 1 -1.0502 -0.0005 -0.0002 24 1 3.0096 -0.4582 -0.9193 25 1 3.0096 -0.5658 0.8573 26 1 1.4778 0.4462 -3.1165 27 1 2.6326 4.0439 -0.3096 28 1 2.9810 5.3142 0.8875 29 1 1.7571 4.0708 1.2399 30 1 5.3315 2.8382 -0.0639 31 1 5.1733 4.5998 0.2165 32 1 7.0114 3.9912 1.5104 33 1 5.9556 3.9018 3.8572 34 1 5.5870 5.3015 2.8045 35 1 2.0691 4.6384 3.1144 36 1 3.2854 5.2104 4.2809 37 1 3.3178 5.7983 2.6009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702119338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:23 Heat of formation + Delta-G solvation = 46.135163 kcal Electronic energy + Delta-G solvation = -19613.769001 eV Core-core repulsion = 16779.633652 eV Total energy + Delta-G solvation = -2834.135349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.91411 -37.25416 -35.05751 -32.52073 -31.79827 -31.60339 -30.12674 -26.32441 -25.47862 -25.19691 -24.51760 -21.53440 -19.91964 -18.41213 -17.62161 -16.70827 -15.71358 -15.56112 -14.94770 -14.38830 -14.06675 -13.95216 -13.45858 -13.27034 -12.98254 -12.42212 -12.19277 -11.91846 -11.82394 -11.59119 -11.43800 -11.10892 -11.08876 -10.92227 -10.52756 -10.49779 -10.21149 -9.94771 -9.75024 -9.29875 -9.20359 -8.61065 -8.32692 -8.12833 -7.90620 -6.32110 -3.91151 3.08363 3.18544 3.18696 3.77190 3.99176 4.16805 4.39861 4.68186 4.91194 4.98255 5.10434 5.27314 5.50415 5.69381 5.76384 5.79003 5.89970 5.92471 6.02114 6.07530 6.23120 6.29886 6.36117 6.46639 6.56754 6.74944 6.82795 6.89829 6.97655 7.00187 7.22092 7.27326 7.37520 7.66445 7.68569 8.32782 9.04614 9.10856 9.49017 9.89456 10.62194 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.009760 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.382581 B = 2868.271138 C = 3564.145397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.084 4.084 3 C 0.242 3.758 4 N -0.440 5.440 5 C -0.343 4.343 6 H 0.111 0.889 7 C 0.036 3.964 8 N -0.851 5.851 9 Si 0.914 3.086 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.482 3.518 14 O -0.600 6.600 15 C -0.055 4.055 16 C -0.146 4.146 17 C 0.043 3.957 18 N -0.664 5.664 19 C 0.043 3.957 20 C -0.089 4.089 21 H 0.101 0.899 22 C -0.140 4.140 23 H 0.194 0.806 24 H 0.101 0.899 25 H 0.068 0.932 26 H 0.270 0.730 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.328 0.672 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 6.585 2.735 8.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.086 4.086 3 C 0.119 3.881 4 N -0.157 5.157 5 C -0.470 4.470 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.488 5.488 9 Si 0.740 3.260 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.270 3.730 14 O -0.486 6.486 15 C -0.059 4.059 16 C -0.203 4.203 17 C -0.086 4.086 18 N -0.291 5.291 19 C -0.087 4.087 20 C -0.109 4.109 21 H 0.119 0.881 22 C -0.197 4.197 23 H 0.211 0.789 24 H 0.119 0.881 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.378 5.413 3.243 7.157 hybrid contribution -0.063 1.399 -1.425 1.998 sum 3.315 6.812 1.818 7.791 Atomic orbital electron populations 1.24077 0.95212 1.02778 1.08380 1.23015 0.94191 0.97667 0.93747 1.18052 0.84264 0.84607 1.01144 1.43583 1.56328 1.10732 1.05049 1.19793 1.34792 1.07796 0.84661 0.87151 1.25270 0.94854 0.97277 0.99580 1.70070 1.21408 1.30192 1.27110 0.86205 0.79280 0.79037 0.81471 1.19780 1.20942 1.19895 1.19739 0.81894 0.88417 0.82908 1.90486 1.59199 1.63068 1.35800 1.21067 0.95364 0.94471 0.94999 1.22119 0.97266 0.97022 1.03906 1.23212 0.90473 1.00698 0.94230 1.63738 1.05408 1.54234 1.05737 1.22964 0.94980 0.95340 0.95393 1.21944 0.93148 0.99084 0.96682 0.88106 1.21909 1.00083 0.97717 1.00026 0.78862 0.88115 0.91410 0.91923 0.89108 0.93321 0.92913 0.87885 0.94301 0.85729 0.90864 0.94865 0.92219 0.93369 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.61 19.21 29.55 0.57 -6.05 16 2 C -0.08 -2.11 11.07 -37.12 -0.41 -2.52 16 3 C 0.24 5.97 5.26 -6.83 -0.04 5.94 16 4 N -0.44 -10.87 2.59 -117.93 -0.31 -11.18 16 5 C -0.34 -8.20 6.54 -14.93 -0.10 -8.29 16 6 H 0.11 2.45 3.81 -52.49 -0.20 2.25 16 7 C 0.04 0.86 5.01 -17.47 -0.09 0.78 16 8 N -0.85 -21.50 8.74 55.50 0.49 -21.01 16 9 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 10 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 12 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 13 C 0.48 11.69 6.45 -10.99 -0.07 11.61 16 14 O -0.60 -16.10 14.79 5.55 0.08 -16.02 16 15 C -0.06 -1.10 0.68 -154.27 -0.10 -1.20 16 16 C -0.15 -2.72 6.89 37.16 0.26 -2.46 16 17 C 0.04 0.78 5.22 -2.18 -0.01 0.76 16 18 N -0.66 -11.02 7.62 -109.66 -0.84 -11.85 16 19 C 0.04 0.65 7.01 -2.18 -0.02 0.64 16 20 C -0.09 -1.59 3.25 -89.24 -0.29 -1.88 16 21 H 0.10 2.09 6.47 -51.93 -0.34 1.76 16 22 C -0.14 -2.07 7.93 37.16 0.29 -1.77 16 23 H 0.19 3.71 7.80 -54.08 -0.42 3.29 16 24 H 0.10 2.50 6.59 -51.93 -0.34 2.15 16 25 H 0.07 1.65 7.30 -51.93 -0.38 1.27 16 26 H 0.27 6.60 8.31 -40.82 -0.34 6.27 16 27 H 0.09 1.85 5.15 -51.93 -0.27 1.58 16 28 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 29 H 0.05 1.02 7.15 -51.93 -0.37 0.65 16 30 H 0.10 2.07 5.97 -51.93 -0.31 1.76 16 31 H 0.04 0.62 7.86 -51.93 -0.41 0.22 16 32 H 0.33 4.47 8.92 -39.29 -0.35 4.11 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.03 0.44 7.84 -51.93 -0.41 0.04 16 35 H 0.06 0.93 6.97 -51.93 -0.36 0.57 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 LS Contribution 288.60 15.07 4.35 4.35 Total: -1.00 -28.62 288.60 -6.07 -34.70 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -4.81 Total: 11.75 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.01 Total: -4.44 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.66 Total: -44.05 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.08 Total: -16.02 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.62 -6.07 -34.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702119338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.830 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds