Wall clock time and date at job start Mon Mar 30 2020 04:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46436 * 183.47009 * 3 2 1 5 5 C 1.37107 * 119.99827 * 272.07874 * 4 3 2 6 6 H 1.07997 * 119.99888 * 193.08148 * 5 4 3 7 7 C 1.38949 * 119.99807 * 13.07449 * 5 4 3 8 8 N 1.31412 * 119.99941 * 18.89774 * 7 5 4 9 9 Si 1.86799 * 120.00037 * 198.88932 * 7 5 4 10 10 H 1.48495 * 109.47017 * 60.00582 * 9 7 5 11 11 H 1.48494 * 109.46975 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47098 * 300.00374 * 9 7 5 13 13 C 1.34776 * 120.00439 * 92.08338 * 4 3 2 14 14 O 1.21293 * 119.99691 * 4.90441 * 13 4 3 15 15 C 1.50694 * 120.00173 * 184.90379 * 13 4 3 16 16 C 1.53006 * 110.28673 * 57.18342 * 15 13 4 17 17 C 1.54380 * 110.32819 * 295.05413 * 15 13 4 18 18 N 1.48558 * 104.59702 * 264.85534 * 17 15 13 19 19 C 1.48559 * 104.21965 * 320.51578 * 18 17 15 20 20 C 1.54267 * 110.41091 * 179.36453 * 15 13 4 21 21 H 1.08999 * 110.32200 * 0.05116 * 20 15 13 22 22 C 1.52995 * 110.32523 * 237.83735 * 20 15 13 23 23 H 4.40630 * 5.51343 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47635 * 63.46897 * 3 2 1 25 25 H 1.08999 * 109.47098 * 303.46319 * 3 2 1 26 26 H 0.97000 * 120.00032 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.46692 * 296.33867 * 16 15 13 28 28 H 1.08999 * 109.46774 * 176.33939 * 16 15 13 29 29 H 1.09002 * 109.47143 * 56.33931 * 16 15 13 30 30 H 1.09005 * 110.40851 * 23.63442 * 17 15 13 31 31 H 1.09000 * 110.41279 * 146.07035 * 17 15 13 32 32 H 1.00898 * 110.99857 * 200.95824 * 18 17 15 33 33 H 1.09000 * 110.40826 * 158.26247 * 19 18 17 34 34 H 1.09003 * 110.41143 * 280.57938 * 19 18 17 35 35 H 1.08999 * 109.47214 * 60.00017 * 22 20 15 36 36 H 1.08999 * 109.47111 * 179.97438 * 22 20 15 37 37 H 1.09003 * 109.47216 * 300.00308 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3797 0.0836 5 6 3.3211 2.1110 -1.0608 6 1 3.8726 3.0389 -1.0245 7 6 2.8016 1.6584 -2.2675 8 7 1.8407 0.7620 -2.2742 9 14 3.4690 2.3242 -3.8801 10 1 4.9195 2.0217 -3.9781 11 1 2.7523 1.6863 -5.0134 12 1 3.2654 3.7943 -3.9308 13 6 3.3979 1.9294 1.2854 14 8 3.3178 1.2560 2.2911 15 6 3.7930 3.3805 1.3798 16 6 2.7133 4.2660 0.7544 17 6 5.1493 3.6137 0.6802 18 7 6.1531 3.5300 1.7722 19 6 5.5053 4.2204 2.9170 20 6 4.0272 3.7797 2.8514 21 1 3.8574 2.9257 3.5070 22 6 3.1090 4.9402 3.2398 23 1 -1.0502 -0.0005 -0.0002 24 1 3.0096 -0.4582 -0.9193 25 1 3.0096 -0.5658 0.8573 26 1 1.4778 0.4462 -3.1165 27 1 2.6326 4.0439 -0.3096 28 1 2.9810 5.3142 0.8875 29 1 1.7571 4.0708 1.2399 30 1 5.3315 2.8382 -0.0639 31 1 5.1733 4.5998 0.2165 32 1 7.0114 3.9912 1.5104 33 1 5.9556 3.9018 3.8572 34 1 5.5870 5.3015 2.8045 35 1 2.0691 4.6384 3.1144 36 1 3.2854 5.2104 4.2809 37 1 3.3178 5.7983 2.6009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702119338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:23 Heat of formation + Delta-G solvation = 26.973697 kcal Electronic energy + Delta-G solvation = -19614.599905 eV Core-core repulsion = 16779.633652 eV Total energy + Delta-G solvation = -2834.966253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54213 -38.88885 -36.97322 -33.99393 -33.57806 -33.35600 -31.66254 -28.17598 -27.05582 -26.53553 -26.17647 -23.01195 -21.54337 -20.19896 -19.23075 -18.48217 -17.43992 -16.98790 -16.55669 -16.16971 -15.78928 -15.61499 -14.83881 -14.79522 -14.43454 -14.12892 -13.83967 -13.68268 -13.35349 -13.21247 -12.88414 -12.70848 -12.55372 -12.31934 -12.15534 -12.06609 -11.57235 -11.47465 -11.25985 -11.13783 -11.08588 -10.53259 -10.13432 -9.82273 -9.41374 -8.15698 -5.80302 1.44941 1.51585 1.58732 1.93294 2.19138 2.37115 2.48707 3.15258 3.19594 3.43707 3.72920 3.81673 3.99280 4.17584 4.29627 4.43040 4.52711 4.64079 4.70592 4.73272 4.81293 4.88861 4.94642 4.96980 4.99126 5.20201 5.22624 5.37903 5.42983 5.45929 5.49966 5.61024 5.81982 5.89000 6.44521 6.57767 7.17692 7.21006 7.61961 8.02529 8.78540 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.021137 B = 0.009760 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.382581 B = 2868.271138 C = 3564.145397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.129 4.129 3 C 0.243 3.757 4 N -0.447 5.447 5 C -0.351 4.351 6 H 0.128 0.872 7 C -0.006 4.006 8 N -0.878 5.878 9 Si 0.979 3.021 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.261 1.261 13 C 0.465 3.535 14 O -0.638 6.638 15 C -0.058 4.058 16 C -0.136 4.136 17 C 0.049 3.951 18 N -0.681 5.681 19 C 0.050 3.950 20 C -0.093 4.093 21 H 0.062 0.938 22 C -0.133 4.133 23 H 0.231 0.769 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.266 0.734 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.347 0.653 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 9.250 2.299 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.131 4.131 3 C 0.121 3.879 4 N -0.164 5.164 5 C -0.478 4.478 6 H 0.145 0.855 7 C -0.209 4.209 8 N -0.515 5.515 9 Si 0.804 3.196 10 H -0.193 1.193 11 H -0.217 1.217 12 H -0.186 1.186 13 C 0.255 3.745 14 O -0.527 6.527 15 C -0.061 4.061 16 C -0.193 4.193 17 C -0.080 4.080 18 N -0.311 5.311 19 C -0.079 4.079 20 C -0.112 4.112 21 H 0.080 0.920 22 C -0.191 4.191 23 H 0.248 0.752 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.043 8.097 2.805 9.475 hybrid contribution -0.304 0.495 -1.237 1.366 sum 3.739 8.592 1.569 9.500 Atomic orbital electron populations 1.24968 0.96201 1.01024 1.06555 1.23327 0.94905 0.99394 0.95452 1.17913 0.84802 0.85147 1.00085 1.43836 1.56046 1.10682 1.05831 1.20208 1.34786 1.08339 0.84457 0.85502 1.26085 0.94808 0.97590 1.02414 1.70209 1.22461 1.31431 1.27427 0.85183 0.78474 0.78860 0.77120 1.19305 1.21698 1.18600 1.20663 0.81333 0.90363 0.82114 1.90448 1.60785 1.64568 1.36914 1.21134 0.96670 0.91278 0.97044 1.22034 0.96239 0.98900 1.02146 1.23047 0.89655 1.01258 0.94044 1.63634 1.06075 1.55704 1.05699 1.22954 0.92789 0.97027 0.95153 1.21938 0.95902 0.98996 0.94371 0.92005 1.21857 0.98371 0.96950 1.01873 0.75234 0.88989 0.92480 0.92323 0.90976 0.89547 0.94493 0.90449 0.91407 0.83593 0.90237 0.91560 0.93716 0.91234 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.42 19.21 74.32 1.43 -10.99 16 2 C -0.13 -6.62 11.07 31.13 0.34 -6.27 16 3 C 0.24 12.59 5.26 84.57 0.44 13.03 16 4 N -0.45 -22.76 2.59 -645.42 -1.67 -24.43 16 5 C -0.35 -16.83 6.54 84.04 0.55 -16.28 16 6 H 0.13 5.53 3.81 -2.91 -0.01 5.52 16 7 C -0.01 -0.30 5.01 84.93 0.43 0.13 16 8 N -0.88 -44.91 8.74 21.66 0.19 -44.72 16 9 Si 0.98 37.91 29.59 68.60 2.03 39.94 16 10 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.29 -11.53 7.11 99.48 0.71 -10.83 16 12 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 13 C 0.46 23.15 6.45 87.66 0.56 23.71 16 14 O -0.64 -35.85 14.79 -3.07 -0.05 -35.89 16 15 C -0.06 -2.24 0.68 -52.03 -0.04 -2.27 16 16 C -0.14 -4.84 6.89 71.98 0.50 -4.34 16 17 C 0.05 1.68 5.22 86.45 0.45 2.13 16 18 N -0.68 -21.08 7.62 -500.85 -3.82 -24.90 16 19 C 0.05 1.38 7.01 86.45 0.61 1.98 16 20 C -0.09 -3.18 3.25 -9.90 -0.03 -3.21 16 21 H 0.06 2.61 6.47 -2.39 -0.02 2.60 16 22 C -0.13 -3.57 7.93 71.98 0.57 -3.00 16 23 H 0.23 8.41 7.80 -4.41 -0.03 8.37 16 24 H 0.09 4.80 6.59 -2.39 -0.02 4.79 16 25 H 0.06 2.98 7.30 -2.39 -0.02 2.96 16 26 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 27 H 0.07 2.84 5.15 -2.39 -0.01 2.83 16 28 H 0.09 2.39 6.43 -2.39 -0.02 2.37 16 29 H 0.04 1.40 7.15 -2.39 -0.02 1.38 16 30 H 0.08 3.05 5.97 -2.38 -0.01 3.04 16 31 H 0.07 1.91 7.86 -2.39 -0.02 1.90 16 32 H 0.35 8.38 8.92 -89.70 -0.80 7.58 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.04 1.32 6.97 -2.39 -0.02 1.30 16 36 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.67 6.61 -2.39 -0.02 1.66 16 Total: -1.00 -63.50 288.60 2.79 -60.71 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: 0.29 Total: 34.66 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 5.81 Total: -5.38 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -5.30 Total: -94.05 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.05 Total: -35.89 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -63.50 2.79 -60.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702119338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.688 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds