Wall clock time and date at job start Mon Mar 30 2020 04:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47207 * 259.90863 * 3 2 1 5 5 C 1.37098 * 119.99916 * 81.61650 * 4 3 2 6 6 H 1.07997 * 119.99433 * 184.86728 * 5 4 3 7 7 C 1.38947 * 120.00296 * 4.86528 * 5 4 3 8 8 N 1.31407 * 119.99904 * 325.41563 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 145.40693 * 7 5 4 10 10 H 1.48503 * 109.46665 * 95.00511 * 9 7 5 11 11 H 1.48505 * 109.46980 * 214.99965 * 9 7 5 12 12 H 1.48500 * 109.47159 * 335.00498 * 9 7 5 13 13 C 1.34777 * 120.00085 * 261.61929 * 4 3 2 14 14 O 1.21294 * 120.00346 * 182.40645 * 13 4 3 15 15 C 1.50705 * 119.99805 * 2.40128 * 13 4 3 16 16 C 1.52993 * 110.28687 * 62.36649 * 15 13 4 17 17 C 1.54375 * 110.32426 * 300.23640 * 15 13 4 18 18 N 1.48725 * 104.52002 * 217.32221 * 17 15 13 19 19 C 1.48561 * 104.28298 * 39.36404 * 18 17 15 20 20 C 1.54267 * 110.32113 * 184.49416 * 15 13 4 21 21 H 1.09003 * 110.31777 * 237.79196 * 20 15 13 22 22 C 1.52999 * 110.32677 * 359.97438 * 20 15 13 23 23 H 4.40636 * 5.51458 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47339 * 19.91117 * 3 2 1 25 25 H 1.09004 * 109.46578 * 139.91309 * 3 2 1 26 26 H 0.96999 * 120.00208 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47231 * 64.65430 * 16 15 13 28 28 H 1.09009 * 109.47027 * 184.65182 * 16 15 13 29 29 H 1.08996 * 109.47356 * 304.64811 * 16 15 13 30 30 H 1.09004 * 110.41600 * 336.03025 * 17 15 13 31 31 H 1.09000 * 110.41327 * 98.47363 * 17 15 13 32 32 H 1.00900 * 111.01749 * 158.96557 * 18 17 15 33 33 H 1.09002 * 110.41156 * 201.79410 * 19 18 17 34 34 H 1.08998 * 110.41146 * 79.35599 * 19 18 17 35 35 H 1.09001 * 109.47208 * 57.45781 * 22 20 15 36 36 H 1.08996 * 109.47014 * 177.46087 * 22 20 15 37 37 H 1.09002 * 109.46882 * 297.46681 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2429 1.3598 5 6 3.2000 -0.7902 2.2587 6 1 3.4847 -0.5977 3.2826 7 6 2.9003 -2.0847 1.8525 8 7 1.9701 -2.2906 0.9475 9 14 3.8200 -3.5324 2.5928 10 1 3.0390 -4.0868 3.7277 11 1 4.0045 -4.5825 1.5591 12 1 5.1473 -3.0787 3.0802 13 6 3.5187 1.4813 1.7272 14 8 3.9639 1.6734 2.8390 15 6 3.3956 2.6275 0.7565 16 6 1.9285 2.8540 0.3865 17 6 4.2314 2.3487 -0.5112 18 7 4.7936 3.6736 -0.8860 19 6 5.1515 4.3005 0.4124 20 6 3.9995 3.9108 1.3634 21 1 3.2511 4.7026 1.3959 22 6 4.5400 3.6314 2.7672 23 1 -1.0500 0.0002 0.0000 24 1 3.0098 -0.9654 -0.3500 25 1 3.0089 0.7871 -0.6618 26 1 1.7611 -3.1943 0.6637 27 1 1.3747 3.1673 1.2716 28 1 1.8618 3.6292 -0.3770 29 1 1.5036 1.9272 0.0012 30 1 5.0337 1.6446 -0.2904 31 1 3.5957 1.9642 -1.3087 32 1 5.6073 3.5685 -1.4732 33 1 5.2085 5.3841 0.3085 34 1 6.0978 3.9026 0.7787 35 1 5.2814 2.8339 2.7190 36 1 5.0031 4.5345 3.1646 37 1 3.7204 3.3267 3.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702221624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:26 Heat of formation + Delta-G solvation = 91.297420 kcal Electronic energy + Delta-G solvation = -19745.340108 eV Core-core repulsion = 16913.163141 eV Total energy + Delta-G solvation = -2832.176967 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27971 -37.10300 -35.62822 -32.64601 -31.76415 -31.33403 -30.33631 -26.79461 -25.79684 -25.17522 -23.97440 -21.37183 -20.67895 -18.46284 -17.86167 -16.68755 -15.97733 -15.61241 -14.90190 -14.31947 -14.15957 -14.01400 -13.72445 -13.27263 -13.08109 -12.77753 -12.50511 -11.98895 -11.89760 -11.58354 -11.36138 -11.14722 -10.93932 -10.74600 -10.66750 -10.41844 -10.22475 -9.96089 -9.84955 -9.31763 -9.02366 -8.65655 -8.43418 -7.97564 -7.45785 -6.45986 -3.75746 3.10427 3.24552 3.32428 3.63891 3.88187 4.02739 4.16586 4.45686 4.84848 4.92831 5.03091 5.14241 5.37621 5.50688 5.54699 5.76508 5.79720 5.92037 6.00277 6.04002 6.20509 6.24827 6.31314 6.41623 6.45184 6.64131 6.75924 6.78702 6.93011 7.00252 7.03701 7.39669 7.46941 7.52080 8.03086 8.41711 8.82001 9.13284 9.37064 9.93988 10.53830 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.008796 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.639888 B = 3182.325195 C = 3695.521197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.102 4.102 3 C 0.204 3.796 4 N -0.432 5.432 5 C -0.326 4.326 6 H 0.108 0.892 7 C 0.042 3.958 8 N -0.840 5.840 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.444 3.556 14 O -0.569 6.569 15 C -0.070 4.070 16 C -0.150 4.150 17 C 0.042 3.958 18 N -0.666 5.666 19 C 0.039 3.961 20 C -0.075 4.075 21 H 0.072 0.928 22 C -0.110 4.110 23 H 0.198 0.802 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.268 0.732 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.331 0.669 33 H 0.075 0.925 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.001 0.999 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 6.976 -5.487 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.103 4.103 3 C 0.081 3.919 4 N -0.149 5.149 5 C -0.453 4.453 6 H 0.126 0.874 7 C -0.164 4.164 8 N -0.477 5.477 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.234 3.766 14 O -0.454 6.454 15 C -0.074 4.074 16 C -0.207 4.207 17 C -0.087 4.087 18 N -0.294 5.294 19 C -0.091 4.091 20 C -0.094 4.094 21 H 0.091 0.909 22 C -0.167 4.167 23 H 0.216 0.784 24 H 0.122 0.878 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.019 0.981 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.872 7.233 -5.174 9.088 hybrid contribution 0.717 -1.547 0.507 1.779 sum 2.589 5.686 -4.666 7.798 Atomic orbital electron populations 1.24262 0.95372 1.06418 1.02232 1.22900 0.94217 0.94953 0.98275 1.19120 0.84654 1.02461 0.85689 1.43946 1.53446 1.07504 1.10040 1.19556 1.46467 0.84522 0.94726 0.87426 1.25169 0.95263 0.98795 0.97144 1.70297 1.23198 1.22387 1.31785 0.86334 0.81240 0.80869 0.78825 1.20551 1.20761 1.19273 1.19873 0.84955 0.82995 0.88797 1.90682 1.50338 1.81105 1.23296 1.21292 0.96877 0.95028 0.94226 1.22198 0.93633 1.03466 1.01376 1.23277 0.97909 0.90767 0.96704 1.63776 1.32742 1.18797 1.14047 1.23040 0.97244 0.99365 0.89401 1.21853 0.96324 0.95358 0.95911 0.90931 1.22256 1.03149 0.96713 0.94589 0.78446 0.87821 0.90098 0.92092 0.92892 0.92169 0.90018 0.93514 0.89162 0.85407 0.90670 0.94075 0.90746 0.98096 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.43 19.02 29.55 0.56 -4.87 16 2 C -0.10 -2.25 8.72 -37.12 -0.32 -2.57 16 3 C 0.20 4.42 4.59 -6.83 -0.03 4.39 16 4 N -0.43 -10.58 2.61 -117.93 -0.31 -10.89 16 5 C -0.33 -8.82 9.31 -14.93 -0.14 -8.96 16 6 H 0.11 3.10 7.37 -52.49 -0.39 2.72 16 7 C 0.04 1.08 4.87 -17.47 -0.09 1.00 16 8 N -0.84 -21.42 9.26 55.50 0.51 -20.91 16 9 Si 0.90 20.06 29.67 -169.99 -5.04 15.02 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 C 0.44 10.34 6.18 -10.98 -0.07 10.27 16 14 O -0.57 -14.55 10.14 5.55 0.06 -14.50 16 15 C -0.07 -1.31 0.68 -154.28 -0.10 -1.41 16 16 C -0.15 -2.67 7.99 37.15 0.30 -2.37 16 17 C 0.04 0.69 5.01 -2.09 -0.01 0.68 16 18 N -0.67 -9.43 7.62 -109.53 -0.84 -10.27 16 19 C 0.04 0.57 7.02 -2.18 -0.02 0.55 16 20 C -0.08 -1.29 3.30 -89.24 -0.29 -1.59 16 21 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 22 C -0.11 -2.10 7.29 37.16 0.27 -1.82 16 23 H 0.20 3.34 7.80 -54.09 -0.42 2.91 16 24 H 0.10 2.39 6.32 -51.93 -0.33 2.06 16 25 H 0.08 1.51 2.84 -51.93 -0.15 1.36 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 29 H 0.08 1.54 2.99 -51.93 -0.16 1.38 16 30 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 31 H 0.09 1.39 5.95 -51.93 -0.31 1.08 16 32 H 0.33 3.92 8.92 -39.29 -0.35 3.57 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 35 H 0.07 1.58 6.30 -52.19 -0.33 1.25 16 36 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.08 1.67 6.40 -52.02 -0.33 1.34 16 LS Contribution 283.81 15.07 4.28 4.28 Total: -1.00 -28.72 283.81 -6.09 -34.80 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.80 Total: 9.18 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 0.06 Total: -6.71 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.63 Total: -42.07 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.06 Total: -14.50 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.04 Total: 15.02 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.72 -6.09 -34.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702221624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.102 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds