Wall clock time and date at job start Mon Mar 30 2020 04:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47207 * 259.90863 * 3 2 1 5 5 C 1.37098 * 119.99916 * 81.61650 * 4 3 2 6 6 H 1.07997 * 119.99433 * 184.86728 * 5 4 3 7 7 C 1.38947 * 120.00296 * 4.86528 * 5 4 3 8 8 N 1.31407 * 119.99904 * 325.41563 * 7 5 4 9 9 Si 1.86800 * 119.99942 * 145.40693 * 7 5 4 10 10 H 1.48503 * 109.46665 * 95.00511 * 9 7 5 11 11 H 1.48505 * 109.46980 * 214.99965 * 9 7 5 12 12 H 1.48500 * 109.47159 * 335.00498 * 9 7 5 13 13 C 1.34777 * 120.00085 * 261.61929 * 4 3 2 14 14 O 1.21294 * 120.00346 * 182.40645 * 13 4 3 15 15 C 1.50705 * 119.99805 * 2.40128 * 13 4 3 16 16 C 1.52993 * 110.28687 * 62.36649 * 15 13 4 17 17 C 1.54375 * 110.32426 * 300.23640 * 15 13 4 18 18 N 1.48725 * 104.52002 * 217.32221 * 17 15 13 19 19 C 1.48561 * 104.28298 * 39.36404 * 18 17 15 20 20 C 1.54267 * 110.32113 * 184.49416 * 15 13 4 21 21 H 1.09003 * 110.31777 * 237.79196 * 20 15 13 22 22 C 1.52999 * 110.32677 * 359.97438 * 20 15 13 23 23 H 4.40636 * 5.51458 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47339 * 19.91117 * 3 2 1 25 25 H 1.09004 * 109.46578 * 139.91309 * 3 2 1 26 26 H 0.96999 * 120.00208 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.47231 * 64.65430 * 16 15 13 28 28 H 1.09009 * 109.47027 * 184.65182 * 16 15 13 29 29 H 1.08996 * 109.47356 * 304.64811 * 16 15 13 30 30 H 1.09004 * 110.41600 * 336.03025 * 17 15 13 31 31 H 1.09000 * 110.41327 * 98.47363 * 17 15 13 32 32 H 1.00900 * 111.01749 * 158.96557 * 18 17 15 33 33 H 1.09002 * 110.41156 * 201.79410 * 19 18 17 34 34 H 1.08998 * 110.41146 * 79.35599 * 19 18 17 35 35 H 1.09001 * 109.47208 * 57.45781 * 22 20 15 36 36 H 1.08996 * 109.47014 * 177.46087 * 22 20 15 37 37 H 1.09002 * 109.46882 * 297.46681 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2429 1.3598 5 6 3.2000 -0.7902 2.2587 6 1 3.4847 -0.5977 3.2826 7 6 2.9003 -2.0847 1.8525 8 7 1.9701 -2.2906 0.9475 9 14 3.8200 -3.5324 2.5928 10 1 3.0390 -4.0868 3.7277 11 1 4.0045 -4.5825 1.5591 12 1 5.1473 -3.0787 3.0802 13 6 3.5187 1.4813 1.7272 14 8 3.9639 1.6734 2.8390 15 6 3.3956 2.6275 0.7565 16 6 1.9285 2.8540 0.3865 17 6 4.2314 2.3487 -0.5112 18 7 4.7936 3.6736 -0.8860 19 6 5.1515 4.3005 0.4124 20 6 3.9995 3.9108 1.3634 21 1 3.2511 4.7026 1.3959 22 6 4.5400 3.6314 2.7672 23 1 -1.0500 0.0002 0.0000 24 1 3.0098 -0.9654 -0.3500 25 1 3.0089 0.7871 -0.6618 26 1 1.7611 -3.1943 0.6637 27 1 1.3747 3.1673 1.2716 28 1 1.8618 3.6292 -0.3770 29 1 1.5036 1.9272 0.0012 30 1 5.0337 1.6446 -0.2904 31 1 3.5957 1.9642 -1.3087 32 1 5.6073 3.5685 -1.4732 33 1 5.2085 5.3841 0.3085 34 1 6.0978 3.9026 0.7787 35 1 5.2814 2.8339 2.7190 36 1 5.0031 4.5345 3.1646 37 1 3.7204 3.3267 3.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702221624.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:26 Heat of formation + Delta-G solvation = 72.006439 kcal Electronic energy + Delta-G solvation = -19746.176628 eV Core-core repulsion = 16913.163141 eV Total energy + Delta-G solvation = -2833.013487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.86872 -38.66389 -37.43228 -34.40382 -33.38208 -32.87095 -31.89607 -28.47208 -27.23887 -26.95866 -25.47340 -22.89836 -22.13240 -20.11716 -19.62205 -18.38759 -17.60739 -17.05677 -16.59312 -15.99074 -15.91470 -15.55442 -15.18584 -14.88469 -14.58341 -14.33370 -14.07282 -13.68807 -13.50854 -13.12669 -12.94244 -12.66634 -12.55886 -12.42444 -12.26158 -12.03249 -11.91316 -11.45918 -11.33545 -11.00201 -10.85313 -10.37002 -9.88375 -9.60765 -9.25605 -8.40643 -5.77879 1.30181 1.40722 1.52960 1.89274 2.15188 2.33033 2.38788 2.92488 3.08942 3.47055 3.57679 3.74297 3.90955 3.97800 4.21342 4.27073 4.43073 4.54825 4.61457 4.72642 4.82968 4.88485 4.90515 4.98036 5.00688 5.04637 5.22581 5.32221 5.44799 5.46559 5.49855 5.64702 5.82691 6.06355 6.42407 6.47816 7.17118 7.19178 7.48905 8.08248 8.57105 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.025002 B = 0.008796 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.639888 B = 3182.325195 C = 3695.521197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.139 4.139 3 C 0.209 3.791 4 N -0.445 5.445 5 C -0.365 4.365 6 H 0.074 0.926 7 C 0.018 3.982 8 N -0.847 5.847 9 Si 0.962 3.038 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.278 1.278 13 C 0.434 3.566 14 O -0.602 6.602 15 C -0.070 4.070 16 C -0.144 4.144 17 C 0.048 3.952 18 N -0.654 5.654 19 C 0.045 3.955 20 C -0.078 4.078 21 H 0.087 0.913 22 C -0.098 4.098 23 H 0.231 0.769 24 H 0.086 0.914 25 H 0.111 0.889 26 H 0.274 0.726 27 H 0.040 0.960 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.103 0.897 32 H 0.349 0.651 33 H 0.103 0.897 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 7.874 -7.264 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.140 4.140 3 C 0.087 3.913 4 N -0.163 5.163 5 C -0.492 4.492 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.483 5.483 9 Si 0.786 3.214 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.203 1.203 13 C 0.225 3.775 14 O -0.490 6.490 15 C -0.073 4.073 16 C -0.201 4.201 17 C -0.082 4.082 18 N -0.283 5.283 19 C -0.084 4.084 20 C -0.097 4.097 21 H 0.105 0.895 22 C -0.154 4.154 23 H 0.247 0.753 24 H 0.104 0.896 25 H 0.128 0.872 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.166 0.834 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.784 8.131 -6.984 10.866 hybrid contribution 0.710 -1.794 1.115 2.229 sum 2.495 6.336 -5.868 8.990 Atomic orbital electron populations 1.25099 0.96337 1.04991 1.00654 1.23169 0.94835 0.96319 0.99707 1.19110 0.84955 1.02554 0.84657 1.44073 1.54003 1.07489 1.10690 1.19358 1.49044 0.86437 0.94347 0.90809 1.25728 0.95195 1.00113 0.97740 1.70343 1.22888 1.23070 1.31971 0.85445 0.79304 0.78239 0.78402 1.20507 1.19057 1.20348 1.20865 0.83508 0.83801 0.89300 1.90696 1.51293 1.81906 1.25103 1.21308 0.98198 0.93592 0.94245 1.22150 0.92570 1.03814 1.01528 1.23146 0.97473 0.91823 0.95721 1.63764 1.33787 1.16948 1.13836 1.23021 0.95743 1.00978 0.88684 1.21915 0.97698 0.94955 0.95174 0.89507 1.21928 1.01230 0.96643 0.95647 0.75279 0.89649 0.87187 0.91600 0.94079 0.89468 0.90899 0.94823 0.87911 0.83406 0.87868 0.94310 0.93690 0.95502 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.01 19.02 74.32 1.41 -8.59 16 2 C -0.14 -6.06 8.72 31.13 0.27 -5.79 16 3 C 0.21 9.13 4.59 84.57 0.39 9.52 16 4 N -0.45 -22.46 2.61 -645.42 -1.69 -24.15 16 5 C -0.37 -20.57 9.31 84.04 0.78 -19.79 16 6 H 0.07 4.55 7.37 -2.91 -0.02 4.53 16 7 C 0.02 0.94 4.87 84.93 0.41 1.35 16 8 N -0.85 -43.19 9.26 21.66 0.20 -42.99 16 9 Si 0.96 41.82 29.67 68.60 2.04 43.85 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.43 20.83 6.18 87.66 0.54 21.37 16 14 O -0.60 -32.50 10.14 -3.07 -0.03 -32.53 16 15 C -0.07 -2.53 0.68 -52.03 -0.04 -2.57 16 16 C -0.14 -4.90 7.99 71.98 0.57 -4.33 16 17 C 0.05 1.46 5.01 86.42 0.43 1.89 16 18 N -0.65 -16.30 7.62 -500.46 -3.82 -20.12 16 19 C 0.04 1.17 7.02 86.45 0.61 1.78 16 20 C -0.08 -2.56 3.30 -9.90 -0.03 -2.59 16 21 H 0.09 2.61 7.71 -2.39 -0.02 2.60 16 22 C -0.10 -3.73 7.29 71.98 0.52 -3.21 16 23 H 0.23 7.14 7.80 -4.42 -0.03 7.10 16 24 H 0.09 3.99 6.32 -2.39 -0.02 3.98 16 25 H 0.11 4.01 2.84 -2.39 -0.01 4.01 16 26 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 29 H 0.07 2.65 2.99 -2.39 -0.01 2.64 16 30 H 0.03 1.12 7.85 -2.38 -0.02 1.10 16 31 H 0.10 2.90 5.95 -2.39 -0.01 2.88 16 32 H 0.35 6.99 8.92 -89.69 -0.80 6.19 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.04 7.86 -2.39 -0.02 1.02 16 35 H 0.04 1.97 6.30 -10.67 -0.07 1.90 16 36 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 1.93 6.40 -8.02 -0.05 1.88 16 Total: -1.00 -63.81 283.81 2.78 -61.02 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.20 Total: 25.87 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 5.88 Total: -10.95 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -5.30 Total: -87.26 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.03 Total: -32.53 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.04 Total: 43.85 kcal Total: -63.81 2.78 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702221624.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.029 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds