Wall clock time and date at job start Mon Mar 30 2020 04:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09000 * 109.52342 * 119.13217 * 3 2 1 5 5 C 1.53038 * 109.50036 * 239.21174 * 3 2 1 6 6 C 1.53043 * 109.54274 * 181.31779 * 5 3 2 7 7 C 1.53192 * 109.30986 * 298.63638 * 6 5 3 8 8 N 1.46927 * 108.89635 * 54.56252 * 7 6 5 9 9 C 1.34775 * 120.63006 * 126.46320 * 8 7 6 10 10 O 1.21577 * 120.00448 * 354.77061 * 9 8 7 11 11 N 1.34787 * 119.99483 * 174.77383 * 9 8 7 12 12 C 1.46492 * 119.99544 * 184.98131 * 11 9 8 13 13 C 1.52998 * 109.47243 * 179.97438 * 12 11 9 14 14 C 1.50701 * 109.47395 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00205 * 179.97438 * 14 13 12 17 17 N 1.31523 * 119.99637 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00367 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46819 * 90.00181 * 18 16 14 20 20 H 1.48506 * 109.47243 * 210.00209 * 18 16 14 21 21 H 1.48500 * 109.47018 * 330.00453 * 18 16 14 22 22 C 1.46964 * 118.71288 * 306.64426 * 8 7 6 23 23 H 4.18817 * 15.02727 * 0.02562 * 4 2 1 24 24 H 1.09003 * 109.45995 * 61.29703 * 5 3 2 25 25 H 1.09003 * 109.46387 * 301.34152 * 5 3 2 26 26 H 1.08995 * 109.50073 * 178.68808 * 6 5 3 27 27 H 1.08995 * 109.52223 * 58.60050 * 6 5 3 28 28 H 1.08999 * 109.58654 * 174.41934 * 7 6 5 29 29 H 1.09006 * 109.58855 * 294.70564 * 7 6 5 30 30 H 0.96994 * 120.00235 * 4.97626 * 11 9 8 31 31 H 1.09001 * 109.47539 * 300.00020 * 12 11 9 32 32 H 1.09010 * 109.47453 * 59.99581 * 12 11 9 33 33 H 1.09006 * 109.46896 * 300.00107 * 13 12 11 34 34 H 1.08999 * 109.46941 * 60.00089 * 13 12 11 35 35 H 0.96998 * 119.99509 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46265 * 293.56560 * 22 8 7 37 37 H 1.09001 * 109.59434 * 173.21430 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0100 0.5010 -0.8974 5 6 3.1565 0.7393 1.2393 6 6 4.6866 0.7691 1.2234 7 6 5.2216 -0.6658 1.2612 8 7 4.6215 -1.4266 0.1567 9 6 5.3986 -2.0935 -0.7196 10 8 6.6086 -1.9926 -0.6584 11 7 4.8341 -2.8723 -1.6638 12 6 5.6780 -3.6820 -2.5459 13 6 4.7946 -4.4665 -3.5180 14 6 5.6627 -5.2990 -4.4259 15 1 6.7371 -5.2717 -4.3198 16 6 5.0854 -6.0964 -5.3912 17 7 3.7769 -6.1301 -5.5200 18 14 6.1614 -7.1289 -6.5161 19 1 6.3839 -8.4623 -5.9013 20 1 5.4883 -7.2954 -7.8293 21 1 7.4675 -6.4500 -6.7118 22 6 3.1580 -1.4429 0.0239 23 1 -1.0500 0.0002 0.0006 24 1 2.8127 0.2243 2.1363 25 1 2.7734 1.7598 1.2374 26 1 5.0489 1.3155 2.0941 27 1 5.0318 1.2623 0.3148 28 1 6.3059 -0.6545 1.1503 29 1 4.9562 -1.1299 2.2111 30 1 3.8691 -2.8966 -1.7592 31 1 6.3471 -3.0302 -3.1077 32 1 6.2664 -4.3779 -1.9477 33 1 4.1258 -5.1184 -2.9559 34 1 4.2060 -3.7710 -4.1162 35 1 3.3707 -6.6908 -6.1993 36 1 2.7222 -1.9713 0.8719 37 1 2.8807 -1.9444 -0.9034 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847350830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:32 Heat of formation + Delta-G solvation = -7.664065 kcal Electronic energy + Delta-G solvation = -17899.134774 eV Core-core repulsion = 15062.666516 eV Total energy + Delta-G solvation = -2836.468259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.50205 -38.94668 -36.67159 -35.03657 -34.87591 -33.42619 -31.42676 -31.01198 -27.16350 -25.89942 -24.76900 -23.10456 -22.20739 -20.66345 -19.38072 -18.76866 -18.47935 -17.25923 -16.77624 -16.50055 -15.79148 -15.65557 -15.48083 -15.24794 -14.93086 -14.77811 -14.27383 -14.01382 -13.60660 -13.18415 -12.93688 -12.73626 -12.52444 -12.30723 -12.25381 -11.99185 -11.76017 -11.66131 -11.52211 -11.33736 -11.11686 -10.91772 -10.60486 -10.18688 -9.50684 -8.23899 -6.34443 1.42200 1.43129 1.53776 1.58723 1.89092 1.92514 2.12139 2.41157 2.91908 3.10987 3.44986 3.77081 3.86248 4.02084 4.13801 4.24773 4.40879 4.46177 4.50532 4.58346 4.75518 4.83691 4.85112 4.93555 5.03049 5.13711 5.16278 5.29628 5.37357 5.47586 5.56091 5.57614 5.78118 5.90178 6.16593 6.71358 6.78409 6.93135 7.34960 7.51795 8.88214 Molecular weight = 250.14amu Principal moments of inertia in cm(-1) A = 0.028812 B = 0.004343 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.581268 B = 6445.036552 C = 7302.770823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.216 4.216 3 C 0.010 3.990 4 H 0.086 0.914 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.120 3.880 8 N -0.626 5.626 9 C 0.700 3.300 10 O -0.634 6.634 11 N -0.737 5.737 12 C 0.159 3.841 13 C 0.024 3.976 14 C -0.546 4.546 15 H 0.060 0.940 16 C 0.008 3.992 17 N -0.927 5.927 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.266 1.266 22 C 0.120 3.880 23 H 0.246 0.754 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.403 0.597 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.008 0.992 34 H 0.007 0.993 35 H 0.266 0.734 36 H 0.088 0.912 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 13.837 14.867 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.216 4.216 3 C -0.009 4.009 4 H 0.104 0.896 5 C -0.139 4.139 6 C -0.164 4.164 7 C -0.002 4.002 8 N -0.363 5.363 9 C 0.402 3.598 10 O -0.516 6.516 11 N -0.393 5.393 12 C 0.035 3.965 13 C -0.013 4.013 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.003 4.003 23 H 0.262 0.738 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.240 0.760 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.423 13.802 14.819 20.964 hybrid contribution -0.265 -0.712 -0.983 1.242 sum -5.688 13.090 13.836 19.878 Atomic orbital electron populations 1.25703 0.96730 0.98511 0.99432 1.22992 0.94373 1.02385 1.01863 1.18560 0.84891 0.96369 1.01098 0.89607 1.21507 0.95053 1.01084 0.96269 1.21904 0.95362 0.95376 1.03735 1.21689 0.98836 0.91641 0.88037 1.47313 1.06188 1.53030 1.29770 1.16067 0.84917 0.79114 0.79726 1.90838 1.14104 1.70275 1.76395 1.45464 1.10767 1.47057 1.36018 1.21101 0.92996 0.91938 0.90459 1.19125 0.94872 0.94195 0.93141 1.21455 0.93762 1.26050 1.17222 0.92212 1.25874 0.96390 0.97968 0.98854 1.70067 1.10911 1.40558 1.35129 0.85428 0.78794 0.78875 0.77847 1.19698 1.20487 1.19040 1.21700 0.78835 0.96509 1.03257 0.73792 0.90196 0.90101 0.87624 0.92394 0.90687 0.89697 0.75978 0.93809 0.93636 0.97367 0.97510 0.92534 0.89372 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.04 19.25 74.32 1.43 -1.61 16 2 C -0.22 -4.14 12.56 31.12 0.39 -3.75 16 3 C 0.01 0.19 2.72 -12.52 -0.03 0.15 16 4 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.10 -1.46 5.12 30.62 0.16 -1.30 16 6 C -0.13 -1.94 6.08 30.67 0.19 -1.75 16 7 C 0.12 2.57 6.44 86.36 0.56 3.13 16 8 N -0.63 -16.89 2.98 -836.80 -2.49 -19.38 16 9 C 0.70 25.89 8.29 179.05 1.49 27.37 16 10 O -0.63 -28.32 15.77 -3.96 -0.06 -28.39 16 11 N -0.74 -27.83 5.47 -478.54 -2.62 -30.45 16 12 C 0.16 7.20 5.62 86.38 0.49 7.68 16 13 C 0.02 1.25 5.09 29.85 0.15 1.41 16 14 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.01 0.45 5.46 84.65 0.46 0.91 16 17 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 18 Si 0.97 43.96 29.54 68.60 2.03 45.99 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.12 2.60 5.62 86.35 0.49 3.09 16 23 H 0.25 2.15 7.80 -4.42 -0.03 2.12 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.95 6.99 -2.39 -0.02 1.93 16 29 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.40 13.44 5.97 -92.71 -0.55 12.88 16 31 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 33 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.78 5.65 -2.39 -0.01 1.77 16 Total: -1.00 -69.94 311.75 3.63 -66.32 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.50 Total: 15.91 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.99 Total: 4.53 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -4.82 Total: -104.36 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.06 Total: -28.39 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.94 3.63 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847350830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.655 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds