Wall clock time and date at job start Mon Mar 30 2020 04:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48497 * 109.47500 * 240.00096 * 3 2 1 5 5 H 1.48503 * 109.46964 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46647 * 120.00006 * 3 2 1 7 7 C 1.37884 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99796 * 175.14120 * 7 2 1 9 9 C 1.50702 * 119.99680 * 355.41360 * 7 2 1 10 10 C 1.52999 * 115.55081 * 274.92986 * 9 7 2 11 11 N 1.46900 * 109.47087 * 296.30896 * 10 9 7 12 12 C 1.46896 * 110.99985 * 174.87378 * 11 10 9 13 13 H 1.08998 * 110.25826 * 32.96177 * 12 11 10 14 14 C 1.54572 * 110.28620 * 270.82740 * 12 11 10 15 15 C 1.54968 * 102.94635 * 219.44668 * 14 12 11 16 16 N 1.48310 * 103.13545 * 37.57295 * 15 14 12 17 17 C 1.46967 * 110.62193 * 203.65983 * 16 15 14 18 18 C 1.53670 * 107.83452 * 96.75981 * 17 16 15 19 19 C 1.53984 * 105.67143 * 0.23048 * 18 17 16 20 20 C 1.48406 * 105.77364 * 320.18873 * 16 15 14 21 21 H 1.09000 * 111.78962 * 148.55477 * 20 16 15 22 22 C 1.53000 * 117.49604 * 129.25816 * 9 7 2 23 23 C 1.53000 * 117.49794 * 60.60188 * 9 7 2 24 24 H 0.96996 * 120.00328 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47002 * 56.30144 * 10 9 7 26 26 H 1.08997 * 109.46962 * 176.30748 * 10 9 7 27 27 H 1.00898 * 110.99671 * 298.82553 * 11 10 9 28 28 H 1.09003 * 110.71768 * 337.80893 * 14 12 11 29 29 H 1.09003 * 110.72035 * 101.08081 * 14 12 11 30 30 H 1.09000 * 110.68553 * 279.15528 * 15 14 12 31 31 H 1.09007 * 110.82852 * 156.05486 * 15 14 12 32 32 H 1.09001 * 109.79263 * 216.34086 * 17 16 15 33 33 H 1.08996 * 109.79526 * 337.12928 * 17 16 15 34 34 H 1.08996 * 110.21073 * 119.27941 * 18 17 16 35 35 H 1.09000 * 110.20759 * 241.18577 * 18 17 16 36 36 H 1.09000 * 110.39189 * 258.29875 * 19 18 17 37 37 H 1.08999 * 110.39250 * 135.91090 * 19 18 17 38 38 H 1.08998 * 117.49833 * 0.02562 * 22 9 7 39 39 H 1.09003 * 117.49529 * 145.02032 * 22 9 7 40 40 H 1.08998 * 117.49744 * 214.97612 * 23 9 7 41 41 H 1.09000 * 117.50301 * 359.97364 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0817 -1.1956 -0.0798 9 6 1.2547 -2.4971 0.1032 10 6 0.9190 -2.9540 1.5243 11 7 2.1626 -3.2147 2.2615 12 6 1.8835 -3.5385 3.6669 13 1 0.9360 -4.0706 3.7506 14 6 1.8531 -2.2486 4.5182 15 6 2.5595 -2.6805 5.8282 16 7 3.6323 -3.5860 5.3499 17 6 4.0402 -4.5130 6.4149 18 6 3.2835 -5.8339 6.2046 19 6 2.4159 -5.6210 4.9503 20 6 3.0268 -4.3869 4.2570 21 1 3.7615 -4.6570 3.4984 22 6 1.5730 -3.5796 -0.9302 23 6 0.2453 -2.8211 -0.9999 24 1 -0.4850 0.8400 0.0004 25 1 0.3523 -2.1737 2.0325 26 1 0.3238 -3.8661 1.4817 27 1 2.6972 -3.9482 1.8207 28 1 2.4075 -1.4491 4.0267 29 1 0.8262 -1.9418 4.7168 30 1 1.8680 -3.2136 6.4807 31 1 2.9842 -1.8181 6.3420 32 1 5.1142 -4.6902 6.3587 33 1 3.7861 -4.0923 7.3878 34 1 3.9878 -6.6495 6.0412 35 1 2.6522 -6.0476 7.0671 36 1 1.3816 -5.4249 5.2327 37 1 2.4735 -6.4913 4.2965 38 1 2.3251 -3.3493 -1.6848 39 1 1.5429 -4.6172 -0.5976 40 1 -0.6577 -3.3600 -0.7134 41 1 0.1232 -2.0916 -1.8006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:13 Heat of formation + Delta-G solvation = 32.004714 kcal Electronic energy + Delta-G solvation = -19058.885113 eV Core-core repulsion = 16359.970116 eV Total energy + Delta-G solvation = -2698.914997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.09692 -36.90462 -34.67493 -32.47449 -31.74068 -29.94301 -28.00336 -25.95396 -25.02940 -23.33730 -21.07873 -20.97276 -20.35122 -19.86394 -18.83690 -16.14840 -16.10502 -15.44551 -14.81038 -14.49840 -14.32118 -13.82622 -13.53619 -13.45096 -13.05237 -12.99941 -12.09948 -12.08235 -11.56039 -11.43972 -11.28311 -11.12437 -10.98605 -10.80689 -10.69444 -10.65652 -10.45254 -10.36578 -10.29274 -10.06683 -9.27796 -8.84574 -8.40801 -8.25990 -7.97139 -7.48211 -5.87738 -3.89536 3.41920 3.45280 3.50567 4.10563 4.54217 4.55470 4.60628 4.72297 5.00484 5.13338 5.19952 5.30817 5.42165 5.44341 5.50012 5.53718 5.64680 5.76526 5.83262 5.85709 5.93293 6.00516 6.06951 6.24267 6.26432 6.33773 6.38569 6.54428 6.65402 6.73688 6.80868 6.95135 7.02968 7.12918 7.20885 7.57513 7.63718 8.02667 8.05552 8.22055 8.63335 9.09269 9.73289 11.21489 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.006146 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.673270 B = 4554.371630 C = 5233.833913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.465 4.465 8 H 0.058 0.942 9 C 0.050 3.950 10 C 0.109 3.891 11 N -0.657 5.657 12 C 0.084 3.916 13 H 0.041 0.959 14 C -0.113 4.113 15 C 0.032 3.968 16 N -0.497 5.497 17 C 0.034 3.966 18 C -0.146 4.146 19 C -0.148 4.148 20 C 0.061 3.939 21 H 0.101 0.899 22 C -0.217 4.217 23 C -0.153 4.153 24 H 0.257 0.743 25 H 0.071 0.929 26 H -0.007 1.007 27 H 0.330 0.670 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -9.825 11.389 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.049 3.951 10 C -0.020 4.020 11 N -0.288 5.288 12 C -0.027 4.027 13 H 0.059 0.941 14 C -0.151 4.151 15 C -0.096 4.096 16 N -0.219 5.219 17 C -0.095 4.095 18 C -0.185 4.185 19 C -0.187 4.187 20 C -0.048 4.048 21 H 0.119 0.881 22 C -0.255 4.255 23 C -0.191 4.191 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.011 0.989 27 H 0.149 0.851 28 H 0.112 0.888 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.851 -8.687 11.348 14.801 hybrid contribution -0.777 -0.534 0.253 0.976 sum 3.074 -9.221 11.601 15.135 Atomic orbital electron populations 1.70006 1.05777 1.26120 1.50760 1.24923 0.94738 0.98669 0.95114 0.86738 0.79626 0.83421 0.78633 1.20537 1.21657 1.20131 1.20252 0.92499 0.88385 1.49200 0.92386 1.18830 0.97584 0.93034 0.85642 1.21565 0.88613 0.96192 0.95615 1.60391 1.21461 1.47366 0.99544 1.22488 0.94841 0.94496 0.90918 0.94118 1.22600 1.00077 0.98796 0.93664 1.23300 0.92419 0.96605 0.97295 1.65831 1.33636 1.15767 1.06650 1.22788 1.00437 0.91252 0.95053 1.22581 0.98977 0.98971 0.98005 1.22914 0.99613 0.99324 0.96893 1.23428 0.95373 0.91257 0.94712 0.88091 1.22993 1.00609 0.95447 1.06416 1.22488 0.90520 1.01550 1.04568 0.93372 0.91057 0.98874 0.85142 0.88816 0.91843 0.94308 0.90284 0.90561 0.91820 0.91338 0.91778 0.91471 0.91028 0.90588 0.92357 0.92429 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 12.65 55.43 0.70 -24.75 16 2 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.47 -12.79 8.71 -34.44 -0.30 -13.09 16 8 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 9 C 0.05 1.22 1.64 -155.66 -0.25 0.97 16 10 C 0.11 2.41 5.33 -3.82 -0.02 2.39 16 11 N -0.66 -12.79 6.15 -105.24 -0.65 -13.44 16 12 C 0.08 1.37 2.86 -66.31 -0.19 1.18 16 13 H 0.04 0.66 6.99 -51.93 -0.36 0.30 16 14 C -0.11 -1.85 6.76 -24.87 -0.17 -2.02 16 15 C 0.03 0.44 6.12 -2.01 -0.01 0.43 16 16 N -0.50 -6.97 5.78 -221.05 -1.28 -8.25 16 17 C 0.03 0.38 6.65 -3.44 -0.02 0.35 16 18 C -0.15 -1.46 6.91 -25.87 -0.18 -1.64 16 19 C -0.15 -1.71 6.17 -25.61 -0.16 -1.87 16 20 C 0.06 0.86 3.84 -65.69 -0.25 0.61 16 21 H 0.10 1.48 7.55 -51.93 -0.39 1.08 16 22 C -0.22 -4.78 9.96 -26.70 -0.27 -5.04 16 23 C -0.15 -3.66 9.15 -26.70 -0.24 -3.91 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.07 1.76 8.13 -51.93 -0.42 1.34 16 26 H -0.01 -0.14 8.10 -51.93 -0.42 -0.56 16 27 H 0.33 6.06 8.10 -39.29 -0.32 5.74 16 28 H 0.09 1.81 8.06 -51.93 -0.42 1.39 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 0.48 7.94 -51.93 -0.41 0.07 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.79 7.38 -51.93 -0.38 0.41 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 2.18 8.14 -51.93 -0.42 1.76 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -28.43 322.43 -10.85 -39.28 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.30 Total: 5.45 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.16 Total: -19.89 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -1.22 Total: -46.44 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.43 -10.85 -39.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.282 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds