Wall clock time and date at job start Mon Mar 30 2020 04:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00418 * 2 1 4 4 H 1.48494 * 109.47111 * 240.00343 * 3 2 1 5 5 H 1.48498 * 109.47043 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47119 * 120.00245 * 3 2 1 7 7 C 1.37877 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00133 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47182 * 179.97438 * 9 7 2 11 11 N 1.45398 * 111.00114 * 298.95780 * 10 9 7 12 12 C 1.46900 * 111.00129 * 174.99878 * 10 9 7 13 13 C 1.53001 * 109.47309 * 297.88220 * 12 10 9 14 14 C 1.52999 * 109.46926 * 299.99851 * 13 12 10 15 15 C 1.52995 * 109.47275 * 299.99888 * 14 13 12 16 16 C 1.53003 * 109.47269 * 300.00252 * 15 14 13 17 17 C 1.52999 * 109.47179 * 59.99689 * 16 15 14 18 18 C 1.52996 * 109.47181 * 179.97438 * 13 12 10 19 19 C 1.53003 * 109.47288 * 60.00198 * 17 16 15 20 20 C 1.52991 * 109.47362 * 177.87859 * 12 10 9 21 21 C 1.52999 * 109.47273 * 60.00268 * 20 12 10 22 22 H 0.97003 * 119.99441 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47230 * 59.99990 * 9 7 2 24 24 H 1.09001 * 109.47441 * 299.99787 * 9 7 2 25 25 H 1.00904 * 110.99829 * 173.44294 * 11 10 9 26 26 H 1.00904 * 110.99829 * 297.39000 * 11 10 9 27 27 H 1.09002 * 109.46683 * 57.87567 * 12 10 9 28 28 H 1.09001 * 109.47370 * 59.99761 * 13 12 10 29 29 H 1.09000 * 109.47461 * 60.00099 * 14 13 12 30 30 H 1.08999 * 109.47573 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.47807 * 180.02562 * 15 14 13 32 32 H 1.08997 * 109.46876 * 299.99876 * 16 15 14 33 33 H 1.09001 * 109.47204 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47461 * 180.02562 * 17 16 15 35 35 H 1.08993 * 109.47347 * 299.99812 * 18 13 12 36 36 H 1.09009 * 109.46894 * 179.97438 * 18 13 12 37 37 H 1.08992 * 109.47120 * 180.02562 * 19 17 16 38 38 H 1.08998 * 109.46718 * 60.00137 * 19 17 16 39 39 H 1.08997 * 109.47220 * 300.00245 * 20 12 10 40 40 H 1.09001 * 109.47368 * 180.02562 * 21 20 12 41 41 H 1.09000 * 109.47164 * 300.00270 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0018 11 7 3.0426 -3.5843 -1.1901 12 6 1.5091 -4.9038 0.1177 13 6 0.7605 -4.9571 1.4511 14 6 1.7575 -4.8077 2.6020 15 6 2.7778 -5.9463 2.5440 16 6 2.0526 -7.2878 2.6684 17 6 1.0556 -7.4372 1.5175 18 6 0.0348 -6.2983 1.5752 19 6 1.8041 -7.3839 0.1841 20 6 2.5293 -6.0424 0.0597 21 6 3.5263 -5.8931 1.2106 22 1 -0.4849 0.8401 0.0004 23 1 0.6238 -2.5567 -0.8903 24 1 0.6245 -2.5571 0.8897 25 1 3.7669 -4.2851 -1.1408 26 1 2.4884 -3.6954 -2.0259 27 1 0.7988 -5.0102 -0.7022 28 1 0.0337 -4.1459 1.4924 29 1 2.2742 -3.8520 2.5134 30 1 1.2243 -4.8452 3.5519 31 1 3.4879 -5.8401 3.3642 32 1 1.5193 -7.3257 3.6183 33 1 2.7794 -8.0990 2.6267 34 1 0.5386 -8.3927 1.6064 35 1 -0.6755 -6.4043 0.7554 36 1 -0.4981 -6.3364 2.5254 37 1 1.0938 -7.4899 -0.6357 38 1 2.5309 -8.1951 0.1429 39 1 3.0625 -6.0044 -0.8901 40 1 4.2534 -6.7040 1.1690 41 1 4.0430 -4.9374 1.1220 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216955316.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:48 Heat of formation + Delta-G solvation = 5.938270 kcal Electronic energy + Delta-G solvation = -20098.521451 eV Core-core repulsion = 17398.476128 eV Total energy + Delta-G solvation = -2700.045323 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.17003 -36.01337 -32.75191 -32.32382 -32.31985 -31.00894 -28.48297 -26.30054 -25.54633 -23.98708 -21.82330 -21.14092 -20.95154 -19.93643 -17.32476 -16.14505 -15.50913 -14.83865 -14.67499 -14.46708 -14.18442 -13.99890 -13.73209 -13.25753 -13.02572 -12.57140 -12.34961 -12.30000 -12.18442 -11.98090 -11.27294 -11.16158 -10.82140 -10.67746 -10.62294 -10.56416 -10.51469 -10.41958 -9.82997 -9.45813 -9.38418 -9.20933 -9.09367 -8.38874 -8.12734 -7.35365 -5.89647 -3.86011 3.43884 3.46296 3.50991 4.41138 4.59790 4.70725 4.74493 4.89418 5.30755 5.35638 5.41348 5.45963 5.47809 5.52132 5.56253 5.59004 5.62959 5.71971 5.85649 5.92815 6.01385 6.04188 6.12552 6.15438 6.24770 6.25347 6.30921 6.32608 6.38322 6.68812 6.75244 6.78356 6.84013 7.00179 7.22336 7.48859 7.80964 8.07353 8.21885 8.45063 8.78355 9.25120 9.75652 11.22328 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.035429 B = 0.006485 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.128827 B = 4316.467353 C = 4438.240488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.046 3.954 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.478 4.478 8 H 0.070 0.930 9 C 0.193 3.807 10 N -0.338 5.338 11 N -0.656 5.656 12 C 0.050 3.950 13 C -0.073 4.073 14 C -0.100 4.100 15 C -0.081 4.081 16 C -0.106 4.106 17 C -0.084 4.084 18 C -0.108 4.108 19 C -0.105 4.105 20 C -0.080 4.080 21 C -0.099 4.099 22 H 0.258 0.742 23 H -0.013 1.013 24 H 0.041 0.959 25 H 0.332 0.668 26 H 0.300 0.700 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.906 -15.745 3.060 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.153 4.153 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.517 4.517 8 H 0.089 0.911 9 C 0.067 3.933 10 N -0.155 5.155 11 N -0.277 5.277 12 C -0.060 4.060 13 C -0.093 4.093 14 C -0.137 4.137 15 C -0.099 4.099 16 C -0.144 4.144 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.099 4.099 21 C -0.136 4.136 22 H 0.068 0.932 23 H 0.005 0.995 24 H 0.059 0.941 25 H 0.144 0.856 26 H 0.113 0.887 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.260 -14.789 3.686 15.586 hybrid contribution -0.694 -0.235 -1.073 1.300 sum 2.566 -15.024 2.612 15.463 Atomic orbital electron populations 1.69956 1.06012 1.26546 1.52543 1.24997 0.94835 0.99242 0.96210 0.86536 0.79286 0.82832 0.78539 1.20427 1.21749 1.20379 1.21085 0.93992 0.89069 1.47583 0.91150 1.19879 0.89640 0.87787 0.95989 1.66242 1.23779 1.00620 1.24866 1.62791 1.11685 1.53948 0.99236 1.22307 0.94444 0.92570 0.96680 1.21009 0.97081 0.96703 0.94501 1.21409 0.96393 0.99434 0.96461 1.20981 0.96988 0.94616 0.97342 1.21546 0.97767 0.97407 0.97670 1.21033 0.96112 0.97988 0.95095 1.21575 0.97055 0.94732 1.01218 1.21509 0.98836 0.96935 0.97025 1.21074 0.96333 0.94076 0.98372 1.21415 0.96587 1.01985 0.93662 0.93207 0.99518 0.94085 0.85598 0.88748 0.95658 0.90465 0.89729 0.93213 0.91861 0.92437 0.92683 0.91992 0.92567 0.92086 0.92618 0.92298 0.92391 0.93365 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.35 5.46 -17.82 -0.10 1.25 16 3 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.48 -13.69 8.88 -34.44 -0.31 -13.99 16 8 H 0.07 2.05 7.74 -52.48 -0.41 1.64 16 9 C 0.19 4.98 4.75 -4.97 -0.02 4.96 16 10 N -0.34 -7.03 3.63 -107.99 -0.39 -7.42 16 11 N -0.66 -12.77 8.91 60.35 0.54 -12.23 16 12 C 0.05 0.88 1.73 -67.72 -0.12 0.76 16 13 C -0.07 -1.23 2.42 -90.62 -0.22 -1.45 16 14 C -0.10 -1.60 5.04 -26.73 -0.13 -1.73 16 15 C -0.08 -1.10 3.20 -90.62 -0.29 -1.39 16 16 C -0.11 -1.26 5.19 -26.73 -0.14 -1.40 16 17 C -0.08 -1.02 3.20 -90.59 -0.29 -1.31 16 18 C -0.11 -1.48 5.20 -26.71 -0.14 -1.62 16 19 C -0.11 -1.30 5.19 -26.73 -0.14 -1.44 16 20 C -0.08 -1.13 2.23 -90.62 -0.20 -1.34 16 21 C -0.10 -1.39 5.00 -26.73 -0.13 -1.52 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 24 H 0.04 1.12 6.11 -51.93 -0.32 0.81 16 25 H 0.33 5.47 7.09 -174.65 -1.24 4.23 16 26 H 0.30 5.65 9.14 -174.65 -1.60 4.06 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.50 6.34 -51.93 -0.33 1.17 16 29 H 0.08 1.61 7.60 -51.93 -0.39 1.22 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.81 6.64 -51.93 -0.34 0.46 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.30 7.49 -51.93 -0.39 0.91 16 LS Contribution 298.33 15.07 4.50 4.50 Total: -1.00 -29.70 298.33 -11.10 -40.80 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -9.22 Total: 3.90 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -2.23 Total: -20.21 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.88 Total: -46.39 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.70 -11.10 -40.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216955316.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.734 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds