Wall clock time and date at job start Mon Mar 30 2020 05:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 110.43387 * 2 1 4 4 C 1.54273 * 110.39025 * 237.65187 * 2 1 3 5 5 H 1.09001 * 112.92630 * 340.12720 * 4 2 1 6 6 C 1.54424 * 108.75369 * 105.69552 * 4 2 1 7 7 N 1.48741 * 104.43514 * 136.76602 * 6 4 2 8 8 C 1.48844 * 103.44892 * 318.41983 * 7 6 4 9 9 C 1.54425 * 104.41701 * 41.57664 * 8 7 6 10 10 H 1.08995 * 112.45890 * 97.40395 * 9 8 7 11 11 C 1.54264 * 108.75960 * 223.25871 * 9 8 7 12 12 N 1.48507 * 104.74038 * 135.47853 * 11 9 8 13 13 C 1.46889 * 111.00368 * 200.68649 * 12 11 9 14 14 C 1.53003 * 109.47086 * 284.34853 * 13 12 11 15 15 C 1.50700 * 115.54816 * 305.17079 * 14 13 12 16 16 H 1.07992 * 120.00205 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99592 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00264 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99730 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46922 * 59.99833 * 19 17 15 21 21 H 1.48499 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47114 * 300.00132 * 19 17 15 23 23 C 1.53005 * 117.50122 * 159.49809 * 14 13 12 24 24 C 1.53002 * 117.49908 * 90.84045 * 14 13 12 25 25 H 1.09002 * 109.46798 * 182.34632 * 1 2 3 26 26 H 1.08997 * 109.47395 * 302.34213 * 1 2 3 27 27 H 1.09001 * 109.46976 * 62.34839 * 1 2 3 28 28 H 1.08997 * 110.46160 * 255.53917 * 6 4 2 29 29 H 1.08998 * 110.46512 * 17.99218 * 6 4 2 30 30 H 1.00906 * 111.00248 * 77.45567 * 7 6 4 31 31 H 1.09002 * 110.34269 * 282.87390 * 8 7 6 32 32 H 1.09000 * 110.60400 * 160.41270 * 8 7 6 33 33 H 1.09002 * 110.38442 * 254.29775 * 11 9 8 34 34 H 1.09003 * 110.38231 * 16.66341 * 11 9 8 35 35 H 1.08997 * 109.47576 * 44.35031 * 13 12 11 36 36 H 1.09008 * 109.47501 * 164.35078 * 13 12 11 37 37 H 0.97003 * 120.00101 * 180.02562 * 18 17 15 38 38 H 1.09002 * 117.49436 * 0.02562 * 23 14 13 39 39 H 1.08989 * 117.49984 * 145.01924 * 23 14 13 40 40 H 1.08999 * 117.49910 * 214.98221 * 24 14 13 41 41 H 1.08998 * 117.49585 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0674 -0.7737 -1.2217 5 1 1.3304 -1.4510 -1.6532 6 6 2.6112 0.2403 -2.2516 7 7 3.8928 -0.3545 -2.7165 8 6 4.5057 -0.8777 -1.4650 9 6 3.3278 -1.5175 -0.6983 10 1 3.2701 -2.5956 -0.8480 11 6 3.4306 -1.1217 0.7891 12 7 2.0473 -0.7447 1.1762 13 6 2.0488 0.1023 2.3764 14 6 2.3206 -0.7615 3.6097 15 6 1.3928 -1.9337 3.7995 16 1 0.6012 -2.1166 3.0880 17 6 1.5546 -2.7728 4.8817 18 7 2.5188 -2.5503 5.7478 19 14 0.4041 -4.2255 5.1173 20 1 0.5025 -5.1302 3.9439 21 1 0.7872 -4.9659 6.3462 22 1 -0.9915 -3.7354 5.2489 23 6 2.8345 -0.0564 4.8667 24 6 3.7776 -0.9364 4.0426 25 1 -0.3633 -1.0268 0.0421 26 1 -0.3634 0.5497 0.8682 27 1 -0.3633 0.4769 -0.9103 28 1 1.9164 0.3471 -3.0846 29 1 2.7888 1.2060 -1.7784 30 1 3.7273 -1.1001 -3.3760 31 1 4.9394 -0.0624 -0.8859 32 1 5.2637 -1.6269 -1.6933 33 1 3.7742 -1.9678 1.3843 34 1 4.1035 -0.2728 0.9105 35 1 2.8266 0.8604 2.2852 36 1 1.0783 0.5879 2.4797 37 1 2.6329 -3.1408 6.5089 38 1 2.9785 1.0228 4.8150 39 1 2.5018 -0.4407 5.8308 40 1 4.0651 -1.8992 4.4649 41 1 4.5426 -0.4365 3.4484 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252563943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:41 Heat of formation + Delta-G solvation = 44.855231 kcal Electronic energy + Delta-G solvation = -19532.310043 eV Core-core repulsion = 16833.952286 eV Total energy + Delta-G solvation = -2698.357757 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07213 -36.95341 -35.16058 -31.80800 -31.34055 -29.92285 -27.88804 -25.93063 -24.73460 -23.72767 -21.96280 -20.63265 -20.17686 -19.17243 -18.73252 -16.72589 -15.92441 -15.20667 -14.90316 -14.61211 -14.35487 -13.54394 -13.35460 -13.31611 -12.83619 -12.63269 -12.19113 -12.00175 -11.63073 -11.35001 -11.16194 -10.97513 -10.81836 -10.66446 -10.63836 -10.52296 -10.49929 -10.30511 -10.07787 -9.89845 -9.37948 -8.82559 -8.67572 -8.22293 -7.95219 -7.67767 -5.84707 -3.86614 3.36355 3.40662 3.44220 4.18912 4.48701 4.53406 4.62487 4.74511 5.14708 5.21696 5.27269 5.37388 5.41161 5.49153 5.68199 5.70588 5.81717 5.90971 5.95217 5.99700 6.01237 6.12256 6.23998 6.29930 6.34249 6.38098 6.54779 6.58718 6.61123 6.64799 6.78620 7.07598 7.24779 7.25834 7.37012 7.57229 7.73463 7.90408 8.15292 8.29523 8.66316 9.10958 9.66831 11.11965 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.006565 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.795546 B = 4264.280561 C = 4460.902612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.043 0.957 4 C -0.118 4.118 5 H 0.087 0.913 6 C 0.042 3.958 7 N -0.670 5.670 8 C 0.041 3.959 9 C -0.126 4.126 10 H 0.087 0.913 11 C 0.053 3.947 12 N -0.480 5.480 13 C 0.092 3.908 14 C 0.029 3.971 15 C -0.447 4.447 16 H 0.065 0.935 17 C 0.052 3.948 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.279 1.279 23 C -0.192 4.192 24 C -0.189 4.189 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.334 0.666 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.035 0.965 35 H 0.012 0.988 36 H 0.062 0.938 37 H 0.256 0.744 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 3.882 -13.347 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.061 0.939 4 C -0.139 4.139 5 H 0.105 0.895 6 C -0.088 4.088 7 N -0.295 5.295 8 C -0.089 4.089 9 C -0.147 4.147 10 H 0.105 0.895 11 C -0.075 4.075 12 N -0.203 5.203 13 C -0.036 4.036 14 C 0.028 3.972 15 C -0.485 4.485 16 H 0.083 0.917 17 C -0.148 4.148 18 N -0.526 5.526 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.231 4.231 24 C -0.227 4.227 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.696 3.985 -13.140 13.749 hybrid contribution -0.547 -0.847 0.468 1.112 sum 0.148 3.138 -12.671 13.055 Atomic orbital electron populations 1.21686 0.94320 1.02539 1.00609 1.22686 0.95996 0.95087 0.90887 0.93906 1.23346 0.97451 0.97072 0.95990 0.89511 1.23260 0.90327 0.98060 0.97147 1.63660 1.21194 1.33028 1.11590 1.23304 0.96333 0.98656 0.90597 1.23349 0.94468 1.00195 0.96640 0.89506 1.23049 0.90682 1.00438 0.93344 1.65333 1.16926 1.36794 1.01223 1.21774 0.98685 0.92800 0.90314 1.18886 0.93251 0.95969 0.89111 1.20517 1.12891 1.07786 1.07266 0.91696 1.25024 0.95711 0.97925 0.96158 1.70011 1.31239 1.37814 1.13583 0.86619 0.81171 0.82733 0.77178 1.20429 1.21608 1.20480 1.22842 1.07167 0.92685 1.00361 1.22803 0.93289 1.01915 1.04650 0.91764 0.92637 0.93225 0.91090 0.90324 0.85171 0.90213 0.90910 0.89513 0.94657 0.97032 0.91968 0.93364 0.94405 0.87168 0.87398 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.34 37.15 0.35 -1.57 16 2 C 0.06 0.95 2.41 -66.16 -0.16 0.79 16 3 H 0.04 0.66 7.01 -51.93 -0.36 0.29 16 4 C -0.12 -1.55 3.63 -87.92 -0.32 -1.86 16 5 H 0.09 1.11 7.94 -51.93 -0.41 0.70 16 6 C 0.04 0.48 6.97 -2.06 -0.01 0.47 16 7 N -0.67 -7.62 7.67 -109.25 -0.84 -8.46 16 8 C 0.04 0.50 6.98 -2.00 -0.01 0.48 16 9 C -0.13 -1.76 4.14 -87.93 -0.36 -2.12 16 10 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 11 C 0.05 0.93 5.31 -2.27 -0.01 0.92 16 12 N -0.48 -9.08 4.70 -222.37 -1.05 -10.12 16 13 C 0.09 1.93 4.68 -3.83 -0.02 1.91 16 14 C 0.03 0.71 2.07 -155.66 -0.32 0.39 16 15 C -0.45 -12.20 8.89 -34.44 -0.31 -12.51 16 16 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 17 C 0.05 1.42 5.28 -17.82 -0.09 1.32 16 18 N -0.89 -24.95 8.59 55.43 0.48 -24.47 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.19 -4.84 9.38 -26.69 -0.25 -5.09 16 24 C -0.19 -4.70 8.74 -26.69 -0.23 -4.94 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.83 7.36 -51.93 -0.38 0.45 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 30 H 0.33 3.26 8.92 -39.29 -0.35 2.91 16 31 H 0.08 1.05 7.17 -51.93 -0.37 0.67 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.72 7.96 -51.93 -0.41 1.31 16 34 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 35 H 0.01 0.24 7.69 -51.93 -0.40 -0.16 16 36 H 0.06 1.29 7.19 -51.92 -0.37 0.92 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 3.06 6.28 -51.94 -0.33 2.73 16 40 H 0.11 2.99 6.28 -51.93 -0.33 2.66 16 41 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -28.00 310.48 -10.46 -38.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.95 Total: 5.21 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -1.76 Total: -21.80 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -1.41 Total: -43.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.00 -10.46 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252563943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.316 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds