Wall clock time and date at job start Mon Mar 30 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47168 * 2 1 4 4 C 1.46503 * 120.00027 * 270.00348 * 3 2 1 5 5 C 1.38626 * 119.99964 * 90.00183 * 3 2 1 6 6 C 1.39166 * 120.48283 * 184.99568 * 5 3 2 7 7 C 1.39132 * 118.26417 * 179.74958 * 6 5 3 8 8 N 1.38639 * 120.48203 * 180.23551 * 7 6 5 9 9 C 1.46501 * 119.99968 * 4.99543 * 8 7 6 10 10 C 1.46497 * 119.99631 * 185.00037 * 8 7 6 11 11 C 1.50697 * 109.47136 * 89.99824 * 10 8 7 12 12 H 1.08001 * 120.00455 * 0.02562 * 11 10 8 13 13 C 1.37877 * 120.00092 * 179.97438 * 11 10 8 14 14 N 1.31515 * 120.00230 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 120.00197 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.46856 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47083 * 119.99959 * 15 13 11 18 18 H 1.48490 * 109.47085 * 239.99899 * 15 13 11 19 19 N 1.33190 * 119.03250 * 0.25252 * 7 6 5 20 20 C 1.31725 * 120.88100 * 0.02562 * 19 7 6 21 21 N 1.31758 * 121.91339 * 359.97096 * 20 19 7 22 22 H 1.08993 * 109.47373 * 59.99637 * 1 2 3 23 23 H 1.08993 * 109.47064 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46720 * 300.00057 * 1 2 3 25 25 H 1.09001 * 109.46994 * 240.00199 * 2 1 3 26 26 H 1.08993 * 109.47373 * 120.00362 * 2 1 3 27 27 H 1.09006 * 109.46894 * 270.00311 * 4 3 2 28 28 H 1.09004 * 109.47121 * 29.99776 * 4 3 2 29 29 H 1.08997 * 109.47148 * 150.00126 * 4 3 2 30 30 H 1.08002 * 120.87065 * 0.03168 * 6 5 3 31 31 H 1.09004 * 109.46853 * 90.00331 * 9 8 7 32 32 H 1.09005 * 109.47114 * 210.00042 * 9 8 7 33 33 H 1.08992 * 109.47609 * 330.00711 * 9 8 7 34 34 H 1.09007 * 109.46830 * 209.99552 * 10 8 7 35 35 H 1.08997 * 109.47730 * 329.99427 * 10 8 7 36 36 H 0.96993 * 120.00511 * 179.97438 * 14 13 11 37 37 H 1.08001 * 119.04343 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 2.2495 2.0347 1.2005 6 6 2.6136 3.3778 1.2146 7 6 2.8291 3.9892 2.4456 8 7 3.1887 5.3264 2.5134 9 6 3.2378 6.1345 1.2924 10 6 3.5196 5.9313 3.8060 11 6 4.9961 5.7813 4.0674 12 1 5.6253 5.2854 3.3430 13 6 5.5442 6.2780 5.2310 14 7 4.7785 6.8832 6.1125 15 14 7.3746 6.0928 5.5548 16 1 8.0092 5.3816 4.4161 17 1 7.9895 7.4363 5.7033 18 1 7.5803 5.3138 6.8021 19 7 2.6852 3.2710 3.5580 20 6 2.3446 1.9997 3.5027 21 7 2.1318 1.3849 2.3569 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.2920 1.9005 -1.5835 28 1 1.5816 1.6878 -2.0284 29 1 2.0956 3.1411 -1.1384 30 1 2.7215 3.9324 0.2941 31 1 2.2641 6.5934 1.1210 32 1 3.9923 6.9135 1.4023 33 1 3.4935 5.4980 0.4454 34 1 3.2593 6.9897 3.7891 35 1 2.9583 5.4316 4.5954 36 1 5.1639 7.2324 6.9313 37 1 2.2366 1.4453 4.4232 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258847637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:08 Heat of formation + Delta-G solvation = 50.794802 kcal Electronic energy + Delta-G solvation = -18317.930423 eV Core-core repulsion = 15516.289882 eV Total energy + Delta-G solvation = -2801.640541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64550 -38.58465 -37.47647 -34.82627 -33.30486 -32.62449 -30.93750 -29.61008 -27.55271 -27.17870 -25.20641 -24.03913 -23.42902 -21.26969 -18.74879 -18.58882 -18.26755 -16.65512 -16.55210 -16.30169 -16.23652 -15.85133 -15.20406 -14.93116 -14.78792 -14.47164 -14.30891 -13.96011 -13.37336 -13.26976 -13.11076 -12.93389 -12.74716 -12.63010 -12.55246 -12.15322 -12.11478 -11.85982 -11.55206 -11.13320 -10.96725 -10.60090 -9.83292 -8.86897 -8.61233 -8.10941 -6.31531 0.48629 0.86589 1.36950 1.38912 1.50487 1.97268 2.30711 2.45081 3.11398 3.27214 3.57258 3.83309 4.05549 4.25949 4.38132 4.39374 4.44191 4.54316 4.62838 4.67251 4.68821 4.75825 4.88943 4.93547 4.97989 5.06874 5.09037 5.26633 5.37021 5.49644 5.71339 5.88317 6.10164 6.23620 6.39397 6.54638 6.80910 6.93217 7.37276 7.72894 8.88837 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.005212 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.696259 B = 5370.623432 C = 5584.536453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.121 3.879 3 N -0.607 5.607 4 C 0.090 3.910 5 C 0.448 3.552 6 C -0.377 4.377 7 C 0.446 3.554 8 N -0.598 5.598 9 C 0.096 3.904 10 C 0.270 3.730 11 C -0.533 4.533 12 H 0.044 0.956 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.279 1.279 19 N -0.634 5.634 20 C 0.359 3.641 21 N -0.627 5.627 22 H 0.060 0.940 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.154 0.846 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.013 0.987 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -10.457 -16.076 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 N -0.321 5.321 4 C -0.052 4.052 5 C 0.208 3.792 6 C -0.411 4.411 7 C 0.206 3.794 8 N -0.307 5.307 9 C -0.046 4.046 10 C 0.149 3.851 11 C -0.572 4.572 12 H 0.063 0.937 13 C -0.187 4.187 14 N -0.567 5.567 15 Si 0.788 3.212 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.205 1.205 19 N -0.362 5.362 20 C 0.068 3.932 21 N -0.358 5.358 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.031 0.969 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -6.428 -10.652 -15.328 19.742 hybrid contribution 0.975 0.711 0.100 1.211 sum -5.453 -9.941 -15.229 18.986 Atomic orbital electron populations 1.22068 0.95776 1.02610 1.01114 1.21483 0.94390 0.80903 1.03360 1.46543 1.69144 1.14349 1.02021 1.21896 1.01960 0.98005 0.83380 1.18349 0.86183 0.87492 0.87163 1.21344 1.25241 0.96378 0.98123 1.18576 0.85873 0.85754 0.89246 1.46921 1.67997 1.06197 1.09606 1.21773 1.01918 0.95290 0.85636 1.18768 0.94539 0.91614 0.80206 1.21666 0.94338 1.36910 1.04320 0.93747 1.25743 1.02723 0.94708 0.95480 1.70047 1.37211 1.39222 1.10179 0.85436 0.79690 0.78097 0.77948 1.19754 1.19646 1.20501 1.68044 1.26116 1.10134 1.31949 1.24736 0.86324 0.86421 0.95737 1.67945 1.30168 1.39742 0.97901 0.92076 0.90092 0.95077 0.88480 0.91197 0.92309 0.88462 0.91167 0.82892 0.91930 0.91297 0.89838 0.96901 0.96480 0.92483 0.77546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.12 2.37 6.20 86.38 0.54 2.90 16 3 N -0.61 -14.69 2.98 -728.48 -2.17 -16.86 16 4 C 0.09 1.48 10.30 127.77 1.32 2.79 16 5 C 0.45 14.86 7.38 132.97 0.98 15.84 16 6 C -0.38 -13.37 8.49 22.71 0.19 -13.18 16 7 C 0.45 19.57 7.38 132.95 0.98 20.55 16 8 N -0.60 -26.98 2.96 -732.88 -2.17 -29.15 16 9 C 0.10 3.23 10.30 127.77 1.32 4.54 16 10 C 0.27 14.78 5.23 85.63 0.45 15.23 16 11 C -0.53 -31.07 9.39 25.60 0.24 -30.83 16 12 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 13 C 0.01 0.71 5.46 84.65 0.46 1.18 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 15 Si 0.96 45.42 29.54 68.60 2.03 47.44 16 16 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 N -0.63 -29.40 9.23 -197.83 -1.83 -31.23 16 20 C 0.36 13.83 12.28 180.92 2.22 16.05 16 21 N -0.63 -22.33 9.22 -197.83 -1.82 -24.16 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 26 H 0.07 1.65 7.33 -2.39 -0.02 1.63 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 29 H 0.07 1.19 6.04 -2.39 -0.01 1.17 16 30 H 0.15 4.47 4.24 -2.91 -0.01 4.45 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 33 H 0.08 2.31 6.04 -2.39 -0.01 2.30 16 34 H 0.01 0.73 8.07 -2.38 -0.02 0.71 16 35 H 0.02 1.05 7.33 -2.39 -0.02 1.03 16 36 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 37 H 0.21 6.53 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -72.36 309.35 4.81 -67.55 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.05 Total: 9.10 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 9.43 Total: 33.04 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -7.71 Total: -157.13 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.36 4.81 -67.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258847637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.348 kcal (2) G-P(sol) polarization free energy of solvation -72.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds