Wall clock time and date at job start Mon Mar 30 2020 03:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.47068 * 111.03056 * 2 1 4 4 C 1.53208 * 109.62292 * 174.26267 * 3 2 1 5 5 C 1.53553 * 108.90060 * 292.35629 * 4 3 2 6 6 N 1.46753 * 107.79540 * 46.69405 * 5 4 3 7 7 N 1.39543 * 127.67021 * 164.91139 * 6 5 4 8 8 C 1.31036 * 108.24838 * 180.18832 * 7 6 5 9 9 C 1.50694 * 125.81838 * 179.89221 * 8 7 6 10 10 H 1.09005 * 109.47004 * 24.69153 * 9 8 7 11 11 C 1.50701 * 109.47410 * 144.69290 * 9 8 7 12 12 H 1.08002 * 119.99632 * 5.00419 * 11 9 8 13 13 C 1.37876 * 120.00341 * 185.00844 * 11 9 8 14 14 N 1.31512 * 119.99868 * 187.21313 * 13 11 9 15 15 Si 1.86795 * 119.99895 * 6.93528 * 13 11 9 16 16 H 1.48499 * 109.47257 * 270.27763 * 15 13 11 17 17 H 1.48505 * 109.47072 * 30.27830 * 15 13 11 18 18 H 1.48504 * 109.47130 * 150.27337 * 15 13 11 19 19 C 1.53003 * 109.47331 * 264.69155 * 9 8 7 20 20 N 1.46903 * 109.46650 * 63.98451 * 19 9 8 21 21 C 1.39933 * 108.36647 * 359.63430 * 8 7 6 22 22 C 1.35540 * 124.23134 * 344.69542 * 6 5 4 23 23 H 1.08995 * 109.47162 * 292.54781 * 1 2 3 24 24 H 1.08994 * 109.47144 * 52.55639 * 1 2 3 25 25 H 1.09002 * 109.46719 * 172.55251 * 1 2 3 26 26 H 1.09000 * 109.43029 * 54.22710 * 3 2 1 27 27 H 1.08999 * 109.43583 * 294.30419 * 3 2 1 28 28 H 1.09001 * 109.56297 * 172.53588 * 4 3 2 29 29 H 1.08994 * 109.66021 * 52.24211 * 4 3 2 30 30 H 1.09000 * 109.79932 * 287.12261 * 5 4 3 31 31 H 1.08999 * 109.79771 * 166.26396 * 5 4 3 32 32 H 0.96996 * 120.00421 * 354.66729 * 14 13 11 33 33 H 1.09001 * 109.47262 * 183.97962 * 19 9 8 34 34 H 1.08997 * 109.47174 * 303.98217 * 19 9 8 35 35 H 1.00899 * 111.00502 * 56.04676 * 20 19 9 36 36 H 1.00905 * 110.99922 * 180.02562 * 20 19 9 37 37 H 1.08002 * 126.12138 * 180.26961 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9969 1.3727 0.0000 4 6 3.5217 1.3377 0.1443 5 6 3.8770 0.8224 1.5465 6 7 3.0599 -0.3684 1.8070 7 7 3.2406 -1.3244 2.8074 8 6 2.2964 -2.2253 2.6894 9 6 2.1192 -3.4373 3.5672 10 1 2.5766 -3.2520 4.5391 11 6 0.6492 -3.7155 3.7487 12 1 -0.0817 -3.1291 3.2117 13 6 0.2375 -4.7186 4.6004 14 7 -1.0324 -5.0568 4.6526 15 14 1.4844 -5.6025 5.6742 16 1 2.0234 -6.7770 4.9427 17 1 2.5951 -4.6752 6.0088 18 1 0.8259 -6.0578 6.9251 19 6 2.7895 -4.6454 2.9100 20 7 4.2373 -4.4131 2.8199 21 6 1.4771 -1.8669 1.6131 22 6 1.9679 -0.7171 1.0838 23 1 -0.3633 0.3940 0.9491 24 1 -0.3633 0.6248 -0.8159 25 1 -0.3633 -1.0190 -0.1332 26 1 1.5661 1.9268 0.8340 27 1 1.7321 1.8631 -0.9368 28 1 3.9241 2.3420 0.0117 29 1 3.9460 0.6723 -0.6075 30 1 3.6576 1.5901 2.2885 31 1 4.9343 0.5606 1.5867 32 1 -1.6902 -4.5504 4.1509 33 1 2.6011 -5.5362 3.5094 34 1 2.3814 -4.7878 1.9094 35 1 4.6289 -4.2145 3.7284 36 1 4.7032 -5.1974 2.3887 37 1 0.6091 -2.4078 1.2659 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259666309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:29 Heat of formation + Delta-G solvation = 59.565696 kcal Electronic energy + Delta-G solvation = -18910.232417 eV Core-core repulsion = 16108.972210 eV Total energy + Delta-G solvation = -2801.260207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.52611 -38.85103 -37.02056 -35.33685 -34.44082 -32.06938 -30.27539 -29.62079 -27.96832 -25.47779 -24.99440 -23.80084 -22.81475 -20.58806 -19.84799 -19.35390 -18.17152 -17.02178 -16.54291 -16.38961 -16.13704 -15.65219 -15.40312 -15.13292 -14.93112 -14.90006 -14.36159 -14.00784 -13.67408 -13.32437 -13.04289 -12.87152 -12.67616 -12.41015 -12.24446 -12.18438 -11.99390 -11.76207 -11.31172 -11.01516 -10.80215 -10.59840 -9.56570 -9.39544 -8.82641 -8.71894 -6.37118 1.02627 1.39745 1.51656 1.63488 1.68132 2.04359 2.45801 2.70487 3.08910 3.44716 3.67889 3.86507 3.91825 4.02786 4.18958 4.32710 4.42106 4.43754 4.52474 4.60294 4.61904 4.66118 4.71961 4.83379 4.86097 4.99977 5.05032 5.09557 5.43205 5.46076 5.70702 5.86866 6.05853 6.07310 6.31864 6.47119 6.57482 6.75320 7.07834 7.40523 8.67087 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.006877 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.084496 B = 4070.604095 C = 4653.356862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.471 5.471 3 C 0.038 3.962 4 C -0.126 4.126 5 C 0.120 3.880 6 N -0.398 5.398 7 N -0.326 5.326 8 C 0.132 3.868 9 C 0.093 3.907 10 H 0.029 0.971 11 C -0.580 4.580 12 H 0.030 0.970 13 C -0.020 4.020 14 N -0.941 5.941 15 Si 1.089 2.911 16 H -0.261 1.261 17 H -0.257 1.257 18 H -0.289 1.289 19 C 0.079 3.921 20 N -0.846 5.846 21 C -0.310 4.310 22 C 0.260 3.740 23 H 0.028 0.972 24 H 0.117 0.883 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.128 0.872 28 H 0.143 0.857 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.253 0.747 33 H 0.023 0.977 34 H 0.053 0.947 35 H 0.340 0.660 36 H 0.345 0.655 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.758 13.265 -9.840 19.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.191 5.191 3 C -0.088 4.088 4 C -0.164 4.164 5 C 0.000 4.000 6 N -0.186 5.186 7 N -0.148 5.148 8 C -0.034 4.034 9 C 0.072 3.928 10 H 0.047 0.953 11 C -0.619 4.619 12 H 0.048 0.952 13 C -0.217 4.217 14 N -0.577 5.577 15 Si 0.911 3.089 16 H -0.187 1.187 17 H -0.181 1.181 18 H -0.216 1.216 19 C -0.052 4.052 20 N -0.376 5.376 21 C -0.342 4.342 22 C 0.037 3.963 23 H 0.047 0.953 24 H 0.135 0.865 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.062 0.938 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.999 12.994 -9.078 19.294 hybrid contribution -1.812 0.182 -0.277 1.842 sum 9.187 13.176 -9.355 18.588 Atomic orbital electron populations 1.22533 0.83032 1.03831 1.02112 1.59428 1.10458 1.15241 1.34014 1.22570 0.95732 0.86149 1.04370 1.22157 0.95107 1.05165 0.94001 1.22243 0.95747 0.82894 0.99070 1.49015 1.23625 1.22034 1.23905 1.77121 1.24703 1.02510 1.10430 1.22155 0.91012 0.95130 0.95090 1.17601 0.95153 0.87706 0.92379 0.95271 1.22146 0.91351 1.20565 1.27860 0.95186 1.27117 1.00427 0.96554 0.97634 1.70930 1.02489 1.39875 1.44451 0.83454 0.73828 0.76439 0.75131 1.18687 1.18147 1.21553 1.21915 0.87732 0.96078 0.99499 1.58683 1.03391 1.46780 1.28775 1.20576 1.07265 1.01518 1.04811 1.19536 0.90717 0.95761 0.90240 0.95343 0.86489 0.91687 0.93376 0.85398 0.83934 0.90422 0.89248 0.88402 0.93821 0.95964 0.92881 0.84713 0.84238 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.14 127.69 1.17 1.97 16 2 N -0.47 -13.44 5.01 -726.12 -3.64 -17.07 16 3 C 0.04 0.70 5.49 86.34 0.47 1.17 16 4 C -0.13 -2.05 6.16 30.85 0.19 -1.86 16 5 C 0.12 2.88 7.40 86.52 0.64 3.52 16 6 N -0.40 -14.86 4.05 -343.82 -1.39 -16.26 16 7 N -0.33 -14.86 12.61 -47.26 -0.60 -15.45 16 8 C 0.13 6.51 5.82 43.09 0.25 6.77 16 9 C 0.09 4.76 1.96 -12.29 -0.02 4.74 16 10 H 0.03 1.53 6.63 -2.38 -0.02 1.52 16 11 C -0.58 -34.13 8.66 25.60 0.22 -33.91 16 12 H 0.03 1.93 6.94 -2.91 -0.02 1.91 16 13 C -0.02 -1.17 5.42 84.65 0.46 -0.71 16 14 N -0.94 -59.59 13.69 21.45 0.29 -59.29 16 15 Si 1.09 51.29 25.39 68.60 1.74 53.04 16 16 H -0.26 -11.27 6.73 99.48 0.67 -10.60 16 17 H -0.26 -11.11 6.38 99.48 0.63 -10.48 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 C 0.08 3.59 5.78 86.30 0.50 4.08 16 20 N -0.85 -31.68 9.31 -186.71 -1.74 -33.42 16 21 C -0.31 -14.53 8.89 22.11 0.20 -14.33 16 22 C 0.26 9.97 6.48 131.25 0.85 10.82 16 23 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 24 H 0.12 1.96 8.11 -2.39 -0.02 1.94 16 25 H 0.06 1.88 7.42 -2.39 -0.02 1.86 16 26 H 0.05 0.92 8.11 -2.39 -0.02 0.90 16 27 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.25 16.24 8.72 -92.71 -0.81 15.43 16 33 H 0.02 1.01 4.42 -2.39 -0.01 1.00 16 34 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.34 12.02 8.99 -89.69 -0.81 11.21 16 36 H 0.34 10.62 9.08 -89.69 -0.81 9.80 16 37 H 0.12 5.89 7.09 -2.91 -0.02 5.87 16 Total: -1.00 -76.42 293.97 -1.08 -77.50 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.68 Total: 28.69 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.92 Total: -17.74 kcal Atomic # 7 Polarization: -134.42 SS G_CDS: -7.07 Total: -141.49 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.74 Total: 53.04 kcal Total: -76.42 -1.08 -77.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259666309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.068 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds