Wall clock time and date at job start Mon Mar 30 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47464 * 2 1 4 4 C 1.38360 * 127.14064 * 270.65688 * 3 2 1 5 5 C 1.39817 * 126.57170 * 0.25977 * 4 3 2 6 6 H 1.07993 * 120.00508 * 0.02562 * 5 4 3 7 7 C 1.40129 * 119.99603 * 180.02562 * 5 4 3 8 8 N 1.30792 * 120.00255 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47264 * 90.00141 * 9 7 5 11 11 H 1.48506 * 109.46809 * 209.99610 * 9 7 5 12 12 H 1.48497 * 109.47239 * 329.99259 * 9 7 5 13 13 N 1.33054 * 106.85167 * 180.25826 * 4 3 2 14 14 N 1.28526 * 109.71105 * 359.97438 * 13 4 3 15 15 C 1.32314 * 110.20205 * 359.97438 * 14 13 4 16 16 N 1.37452 * 126.23993 * 180.02562 * 15 14 13 17 17 C 1.46841 * 111.00127 * 60.91626 * 16 15 14 18 18 C 1.53031 * 109.52322 * 174.16135 * 17 16 15 19 19 C 1.53113 * 109.27978 * 59.17869 * 18 17 16 20 20 C 1.53122 * 109.16113 * 302.34650 * 19 18 17 21 21 C 1.46848 * 110.99795 * 296.70555 * 16 15 14 22 22 H 1.09003 * 109.47025 * 300.03861 * 1 2 3 23 23 H 1.09004 * 109.47150 * 60.03692 * 1 2 3 24 24 H 1.09004 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46860 * 239.99874 * 2 1 3 26 26 H 1.09007 * 109.47131 * 120.00401 * 2 1 3 27 27 H 0.96989 * 120.00202 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46206 * 294.17855 * 17 16 15 29 29 H 1.09003 * 109.46489 * 54.14658 * 17 16 15 30 30 H 1.09004 * 109.50721 * 299.23667 * 18 17 16 31 31 H 1.09000 * 109.50648 * 179.12057 * 18 17 16 32 32 H 1.09008 * 109.52768 * 182.44241 * 19 18 17 33 33 H 1.08997 * 109.57867 * 62.28132 * 19 18 17 34 34 H 1.08999 * 109.49914 * 297.71096 * 20 19 18 35 35 H 1.08999 * 109.53317 * 177.61682 * 20 19 18 36 36 H 1.09005 * 109.46284 * 305.85530 * 21 16 15 37 37 H 1.08998 * 109.45916 * 65.83373 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2850 2.1729 -1.1029 5 6 2.1349 1.8101 -2.4448 6 1 1.7778 0.8236 -2.7008 7 6 2.4480 2.7265 -3.4575 8 7 2.8801 3.9215 -3.1476 9 14 2.2469 2.2420 -5.2504 10 1 0.8759 2.5861 -5.7054 11 1 3.2407 2.9747 -6.0756 12 1 2.4645 0.7802 -5.3955 13 7 2.7114 3.3458 -0.6416 14 7 2.7237 3.3277 0.6435 15 6 2.3091 2.1525 1.0879 16 7 2.1931 1.7766 2.4049 17 6 1.2387 2.6369 3.1156 18 6 1.0256 2.1020 4.5335 19 6 2.3669 2.0775 5.2715 20 6 3.3574 1.2141 4.4853 21 6 3.5029 1.7748 3.0689 22 1 -0.3633 0.5144 0.8897 23 1 -0.3634 0.5133 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0972 4.5556 -3.8485 28 1 1.6323 3.6521 3.1658 29 1 0.2878 2.6421 2.5828 30 1 0.6189 1.0919 4.4842 31 1 0.3291 2.7497 5.0660 32 1 2.2273 1.6566 6.2673 33 1 2.7558 3.0923 5.3562 34 1 2.9874 0.1901 4.4352 35 1 4.3270 1.2268 4.9832 36 1 4.1966 1.1538 2.5020 37 1 3.8858 2.7940 3.1194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259789374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:32 Heat of formation + Delta-G solvation = 65.049372 kcal Electronic energy + Delta-G solvation = -19002.745891 eV Core-core repulsion = 16201.723474 eV Total energy + Delta-G solvation = -2801.022417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.71888 -38.27790 -34.19201 -33.74354 -32.79316 -30.57563 -29.41560 -28.40168 -25.40491 -23.71152 -22.91586 -22.71619 -20.67483 -19.65515 -18.96996 -17.19223 -16.03689 -15.46327 -14.90672 -14.61039 -14.26891 -13.86020 -13.75502 -13.33329 -13.23645 -12.95935 -12.77929 -12.07786 -11.92282 -11.60581 -11.43648 -11.22361 -10.96968 -10.94088 -10.64443 -10.58046 -10.36432 -10.23632 -10.14772 -9.57105 -9.37798 -8.86247 -8.50456 -7.65141 -7.46667 -6.55492 -4.49753 2.97330 3.10262 3.13550 3.45182 3.70898 4.01288 4.50418 4.70969 5.02389 5.08844 5.13143 5.40633 5.50537 5.51735 5.71202 5.76537 5.80253 5.83617 5.86987 6.03218 6.09325 6.10540 6.15878 6.18938 6.30196 6.35079 6.37301 6.52041 6.64972 6.92172 7.03732 7.24693 7.40238 7.50103 7.82042 8.28600 8.51775 8.84608 9.05967 10.36955 10.82157 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006150 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.792839 B = 4551.926202 C = 4908.105515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 N -0.511 5.511 4 C 0.343 3.657 5 C -0.449 4.449 6 H 0.082 0.918 7 C 0.079 3.921 8 N -0.740 5.740 9 Si 0.917 3.083 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.263 1.263 13 N -0.336 5.336 14 N -0.313 5.313 15 C 0.223 3.777 16 N -0.449 5.449 17 C 0.072 3.928 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.115 4.115 21 C 0.070 3.930 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.277 0.723 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -7.114 9.241 11.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 N -0.213 5.213 4 C 0.099 3.901 5 C -0.489 4.489 6 H 0.100 0.900 7 C -0.146 4.146 8 N -0.364 5.364 9 Si 0.741 3.259 10 H -0.195 1.195 11 H -0.201 1.201 12 H -0.187 1.187 13 N -0.183 5.183 14 N -0.159 5.159 15 C -0.130 4.130 16 N -0.174 5.174 17 C -0.056 4.056 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.058 4.058 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.377 -5.932 9.241 11.235 hybrid contribution -0.334 -0.856 -0.892 1.280 sum -2.711 -6.788 8.349 11.097 Atomic orbital electron populations 1.22078 0.96107 1.01152 1.02576 1.21152 0.94148 0.81724 1.02131 1.46023 1.56672 1.12409 1.06181 1.21413 0.94366 0.86163 0.88162 1.18056 1.43583 1.00751 0.86513 0.90013 1.25769 0.93503 0.94256 1.01023 1.70008 1.27661 1.04019 1.34718 0.86184 0.78819 0.79622 0.81263 1.19481 1.20101 1.18724 1.75543 1.27637 1.17107 0.98014 1.74455 1.16788 1.16645 1.08030 1.21246 1.14812 0.90805 0.86174 1.57836 1.09775 1.52380 0.97429 1.21994 0.95760 0.94619 0.93214 1.21607 0.97032 1.01645 0.95000 1.21567 0.95809 1.00128 0.98241 1.21606 0.98939 0.99855 0.94872 1.22021 0.89795 1.00235 0.93712 0.92708 0.92067 0.92274 0.90648 0.90758 0.91182 0.93848 0.91454 0.91453 0.91783 0.92238 0.92180 0.91462 0.91781 0.91441 0.93870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.13 2.51 6.68 -4.05 -0.03 2.49 16 3 N -0.51 -12.32 2.85 -116.70 -0.33 -12.65 16 4 C 0.34 9.62 7.53 -154.82 -1.17 8.46 16 5 C -0.45 -12.00 9.05 -38.28 -0.35 -12.34 16 6 H 0.08 2.00 7.33 -52.49 -0.38 1.61 16 7 C 0.08 2.05 5.50 -17.29 -0.10 1.96 16 8 N -0.74 -20.66 11.94 55.56 0.66 -19.99 16 9 Si 0.92 18.80 29.56 -169.99 -5.03 13.78 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 12 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 13 N -0.34 -10.23 10.48 31.26 0.33 -9.90 16 14 N -0.31 -8.77 12.20 30.28 0.37 -8.40 16 15 C 0.22 5.36 6.35 -319.06 -2.03 3.33 16 16 N -0.45 -8.66 4.63 -174.61 -0.81 -9.47 16 17 C 0.07 1.25 5.35 -3.84 -0.02 1.23 16 18 C -0.11 -1.48 6.09 -26.66 -0.16 -1.65 16 19 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 20 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 21 C 0.07 1.22 5.37 -3.84 -0.02 1.19 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.37 7.56 -51.93 -0.39 0.98 16 26 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.28 7.00 8.29 -40.82 -0.34 6.67 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -32.09 304.34 -9.85 -41.94 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.83 Total: 0.95 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.81 Total: -0.84 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.22 Total: -60.42 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.09 -9.85 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.990 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds