Wall clock time and date at job start Mon Mar 30 2020 03:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47464 * 2 1 4 4 C 1.38360 * 127.14064 * 270.65688 * 3 2 1 5 5 C 1.39817 * 126.57170 * 0.25977 * 4 3 2 6 6 H 1.07993 * 120.00508 * 0.02562 * 5 4 3 7 7 C 1.40129 * 119.99603 * 180.02562 * 5 4 3 8 8 N 1.30792 * 120.00255 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99672 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47264 * 90.00141 * 9 7 5 11 11 H 1.48506 * 109.46809 * 209.99610 * 9 7 5 12 12 H 1.48497 * 109.47239 * 329.99259 * 9 7 5 13 13 N 1.33054 * 106.85167 * 180.25826 * 4 3 2 14 14 N 1.28526 * 109.71105 * 359.97438 * 13 4 3 15 15 C 1.32314 * 110.20205 * 359.97438 * 14 13 4 16 16 N 1.37452 * 126.23993 * 180.02562 * 15 14 13 17 17 C 1.46841 * 111.00127 * 60.91626 * 16 15 14 18 18 C 1.53031 * 109.52322 * 174.16135 * 17 16 15 19 19 C 1.53113 * 109.27978 * 59.17869 * 18 17 16 20 20 C 1.53122 * 109.16113 * 302.34650 * 19 18 17 21 21 C 1.46848 * 110.99795 * 296.70555 * 16 15 14 22 22 H 1.09003 * 109.47025 * 300.03861 * 1 2 3 23 23 H 1.09004 * 109.47150 * 60.03692 * 1 2 3 24 24 H 1.09004 * 109.47574 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46860 * 239.99874 * 2 1 3 26 26 H 1.09007 * 109.47131 * 120.00401 * 2 1 3 27 27 H 0.96989 * 120.00202 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.46206 * 294.17855 * 17 16 15 29 29 H 1.09003 * 109.46489 * 54.14658 * 17 16 15 30 30 H 1.09004 * 109.50721 * 299.23667 * 18 17 16 31 31 H 1.09000 * 109.50648 * 179.12057 * 18 17 16 32 32 H 1.09008 * 109.52768 * 182.44241 * 19 18 17 33 33 H 1.08997 * 109.57867 * 62.28132 * 19 18 17 34 34 H 1.08999 * 109.49914 * 297.71096 * 20 19 18 35 35 H 1.08999 * 109.53317 * 177.61682 * 20 19 18 36 36 H 1.09005 * 109.46284 * 305.85530 * 21 16 15 37 37 H 1.08998 * 109.45916 * 65.83373 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2850 2.1729 -1.1029 5 6 2.1349 1.8101 -2.4448 6 1 1.7778 0.8236 -2.7008 7 6 2.4480 2.7265 -3.4575 8 7 2.8801 3.9215 -3.1476 9 14 2.2469 2.2420 -5.2504 10 1 0.8759 2.5861 -5.7054 11 1 3.2407 2.9747 -6.0756 12 1 2.4645 0.7802 -5.3955 13 7 2.7114 3.3458 -0.6416 14 7 2.7237 3.3277 0.6435 15 6 2.3091 2.1525 1.0879 16 7 2.1931 1.7766 2.4049 17 6 1.2387 2.6369 3.1156 18 6 1.0256 2.1020 4.5335 19 6 2.3669 2.0775 5.2715 20 6 3.3574 1.2141 4.4853 21 6 3.5029 1.7748 3.0689 22 1 -0.3633 0.5144 0.8897 23 1 -0.3634 0.5133 -0.8903 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.0972 4.5556 -3.8485 28 1 1.6323 3.6521 3.1658 29 1 0.2878 2.6421 2.5828 30 1 0.6189 1.0919 4.4842 31 1 0.3291 2.7497 5.0660 32 1 2.2273 1.6566 6.2673 33 1 2.7558 3.0923 5.3562 34 1 2.9874 0.1901 4.4352 35 1 4.3270 1.2268 4.9832 36 1 4.1966 1.1538 2.5020 37 1 3.8858 2.7940 3.1194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259789374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:32 Heat of formation + Delta-G solvation = 45.952493 kcal Electronic energy + Delta-G solvation = -19003.573994 eV Core-core repulsion = 16201.723474 eV Total energy + Delta-G solvation = -2801.850519 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.66489 -39.69559 -35.95111 -35.59875 -34.24971 -31.83357 -31.15624 -30.27590 -27.28487 -25.26875 -24.46882 -23.98907 -22.55236 -21.21808 -20.46173 -19.05218 -17.74813 -17.22650 -16.60110 -16.27013 -15.54524 -15.44511 -15.26632 -14.77384 -14.63942 -14.26045 -14.18828 -13.61718 -13.25318 -13.21714 -13.13939 -12.88408 -12.73015 -12.15787 -12.11611 -11.92935 -11.65555 -11.62990 -11.43592 -11.35067 -11.23352 -10.71957 -10.41105 -9.53069 -9.44393 -8.48660 -6.56576 1.26296 1.41980 1.58493 1.66247 1.97926 2.28173 2.50270 3.16207 3.39808 3.86283 3.94563 3.97852 4.08661 4.28617 4.33446 4.42836 4.44873 4.49281 4.62622 4.76504 4.81155 4.83241 4.86450 4.99143 5.03033 5.10085 5.13712 5.21344 5.24220 5.28777 5.37527 5.49005 5.58619 5.91223 6.00375 6.28332 6.60377 6.84155 7.15242 8.46997 8.78183 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.037535 B = 0.006150 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.792839 B = 4551.926202 C = 4908.105515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.124 3.876 3 N -0.514 5.514 4 C 0.316 3.684 5 C -0.472 4.472 6 H 0.100 0.900 7 C 0.029 3.971 8 N -0.792 5.792 9 Si 1.004 2.996 10 H -0.262 1.262 11 H -0.272 1.272 12 H -0.247 1.247 13 N -0.392 5.392 14 N -0.366 5.366 15 C 0.252 3.748 16 N -0.442 5.442 17 C 0.071 3.929 18 C -0.104 4.104 19 C -0.118 4.118 20 C -0.104 4.104 21 C 0.069 3.931 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.282 0.718 28 H 0.019 0.981 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -9.801 10.362 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.001 3.999 3 N -0.215 5.215 4 C 0.070 3.930 5 C -0.512 4.512 6 H 0.118 0.882 7 C -0.191 4.191 8 N -0.418 5.418 9 Si 0.823 3.177 10 H -0.186 1.186 11 H -0.197 1.197 12 H -0.170 1.170 13 N -0.238 5.238 14 N -0.210 5.210 15 C -0.105 4.105 16 N -0.168 5.168 17 C -0.057 4.057 18 C -0.141 4.141 19 C -0.155 4.155 20 C -0.141 4.141 21 C -0.059 4.059 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -3.353 -8.634 10.396 13.924 hybrid contribution -0.039 -0.064 -1.082 1.084 sum -3.392 -8.698 9.314 13.188 Atomic orbital electron populations 1.21985 0.94064 1.03511 1.01111 1.21563 0.95793 0.79083 1.03455 1.46347 1.56037 1.13979 1.05121 1.21813 0.95059 0.86502 0.89635 1.18545 1.44233 1.01888 0.86515 0.88236 1.26960 0.92140 0.93669 1.06316 1.70166 1.29176 1.05702 1.36751 0.84898 0.78939 0.79908 0.73976 1.18633 1.19685 1.17047 1.75398 1.29921 1.19269 0.99172 1.74343 1.19905 1.19159 1.07629 1.21884 1.10690 0.89711 0.88165 1.58230 1.11216 1.52013 0.95332 1.22084 0.94115 0.93561 0.95909 1.21586 0.98469 1.02455 0.91632 1.21596 0.94491 0.99929 0.99509 1.21586 1.00807 1.00227 0.91509 1.22121 0.88271 0.99052 0.96459 0.93431 0.94200 0.87906 0.89954 0.88716 0.90776 0.96213 0.92978 0.90211 0.89537 0.88740 0.92766 0.90200 0.89499 0.92821 0.96207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.12 4.51 6.68 86.38 0.58 5.09 16 3 N -0.51 -25.24 2.85 -523.12 -1.49 -26.73 16 4 C 0.32 18.44 7.53 133.25 1.00 19.44 16 5 C -0.47 -25.77 9.05 23.11 0.21 -25.56 16 6 H 0.10 4.85 7.33 -2.91 -0.02 4.83 16 7 C 0.03 1.54 5.50 85.31 0.47 2.01 16 8 N -0.79 -46.18 11.94 21.86 0.26 -45.92 16 9 Si 1.00 38.67 29.56 68.60 2.03 40.70 16 10 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 11 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 12 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 13 N -0.39 -25.23 10.48 -55.01 -0.58 -25.81 16 14 N -0.37 -21.66 12.20 -58.10 -0.71 -22.37 16 15 C 0.25 12.47 6.35 260.18 1.65 14.12 16 16 N -0.44 -16.98 4.63 -706.34 -3.27 -20.25 16 17 C 0.07 2.44 5.35 86.32 0.46 2.91 16 18 C -0.10 -2.37 6.09 30.64 0.19 -2.18 16 19 C -0.12 -2.38 6.00 30.67 0.18 -2.19 16 20 C -0.10 -2.35 6.09 30.65 0.19 -2.16 16 21 C 0.07 2.35 5.37 86.32 0.46 2.81 16 22 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.10 2.32 8.14 -2.38 -0.02 2.31 16 25 H 0.08 2.88 7.56 -2.39 -0.02 2.87 16 26 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 27 H 0.28 14.87 8.29 -92.72 -0.77 14.10 16 28 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.95 8.10 -2.38 -0.02 1.93 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -75.55 304.34 3.41 -72.14 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 1.04 Total: 17.88 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.13 Total: 10.37 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -5.79 Total: -141.08 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -75.55 3.41 -72.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259789374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.088 kcal (2) G-P(sol) polarization free energy of solvation -75.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds