Wall clock time and date at job start Mon Mar 30 2020 03:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.01374 * 2 1 4 4 C 1.53054 * 109.37872 * 183.16879 * 3 2 1 5 5 N 1.46952 * 109.36792 * 301.61181 * 4 3 2 6 6 C 1.46897 * 111.00367 * 183.18887 * 5 4 3 7 7 C 1.50700 * 109.47217 * 46.20142 * 6 5 4 8 8 C 1.39864 * 125.89888 * 94.71226 * 7 6 5 9 9 C 1.35325 * 107.91595 * 179.86858 * 8 7 6 10 10 N 1.34938 * 107.74740 * 0.39180 * 9 8 7 11 11 H 0.97001 * 126.03665 * 179.74810 * 10 9 8 12 12 N 1.30840 * 125.89695 * 275.02868 * 7 6 5 13 13 C 1.46960 * 110.88079 * 59.31760 * 5 4 3 14 14 C 1.46951 * 111.00017 * 123.81472 * 2 1 3 15 15 H 1.09003 * 109.49190 * 296.79684 * 14 2 1 16 16 C 1.50699 * 109.49247 * 56.84346 * 14 2 1 17 17 H 1.08001 * 119.99618 * 24.92047 * 16 14 2 18 18 C 1.37874 * 120.00215 * 204.92517 * 16 14 2 19 19 N 1.31510 * 120.00016 * 357.83934 * 18 16 14 20 20 Si 1.86807 * 120.00058 * 177.84560 * 18 16 14 21 21 H 1.48496 * 109.46741 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46464 * 299.99540 * 20 18 16 23 23 H 1.48496 * 109.47044 * 59.99518 * 20 18 16 24 24 H 1.09003 * 109.46820 * 290.59490 * 1 2 3 25 25 H 1.08994 * 109.47344 * 50.59321 * 1 2 3 26 26 H 1.09000 * 109.47386 * 170.59838 * 1 2 3 27 27 H 1.08995 * 109.47174 * 63.20606 * 3 2 1 28 28 H 1.08996 * 109.50909 * 303.15709 * 3 2 1 29 29 H 1.08997 * 109.48979 * 181.64014 * 4 3 2 30 30 H 1.09000 * 109.49014 * 61.58181 * 4 3 2 31 31 H 1.09002 * 109.47236 * 166.20112 * 6 5 4 32 32 H 1.08994 * 109.46756 * 286.19932 * 6 5 4 33 33 H 1.07996 * 126.04401 * 359.97438 * 8 7 6 34 34 H 1.08000 * 126.12232 * 180.15446 * 9 8 7 35 35 H 1.08998 * 109.49246 * 180.71568 * 13 5 4 36 36 H 1.09004 * 109.50384 * 60.65738 * 13 5 4 37 37 H 0.97001 * 120.00122 * 354.45478 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3718 0.0000 4 6 3.5239 1.3289 -0.0798 5 7 4.0502 0.5656 1.0603 6 6 5.5192 0.5656 1.0608 7 6 6.0216 1.9649 0.8144 8 6 6.3824 2.8917 1.7978 9 6 6.7821 4.0248 1.1753 10 7 6.6696 3.8251 -0.1545 11 1 6.8830 4.4687 -0.8483 12 7 6.1901 2.5245 -0.3562 13 6 3.5235 -0.8064 1.0600 14 6 1.9957 -0.7635 1.1398 15 1 1.6935 -0.2828 2.0703 16 6 1.4505 -2.1678 1.0994 17 1 1.1321 -2.5966 0.1606 18 6 1.3581 -2.9052 2.2607 19 7 1.7850 -2.3989 3.3968 20 14 0.6266 -4.6236 2.2202 21 1 0.6416 -5.2002 3.5886 22 1 -0.7723 -4.5545 1.7269 23 1 1.4296 -5.4822 1.3129 24 1 -0.3633 0.3615 0.9620 25 1 -0.3634 0.6523 -0.7940 26 1 -0.3634 -1.0138 -0.1679 27 1 1.6939 1.8771 0.9173 28 1 1.6020 1.9131 -0.8601 29 1 3.9182 2.3447 -0.0506 30 1 3.8261 0.8479 -1.0101 31 1 5.8822 0.2140 2.0266 32 1 5.8827 -0.0948 0.2736 33 1 6.3496 2.7309 2.8652 34 1 7.1256 4.9285 1.6567 35 1 3.9175 -1.3474 1.9203 36 1 3.8257 -1.3120 0.1428 37 1 2.2376 -1.5410 3.4058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871502.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:17 Heat of formation + Delta-G solvation = 68.088155 kcal Electronic energy + Delta-G solvation = -18802.423919 eV Core-core repulsion = 16001.533274 eV Total energy + Delta-G solvation = -2800.890645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17341 -40.17513 -36.76754 -35.06860 -32.88276 -31.48275 -30.85561 -29.67644 -26.95763 -26.46812 -24.14547 -23.62052 -22.30986 -20.95234 -20.42151 -18.99951 -18.79214 -17.08158 -16.44042 -16.08007 -15.85860 -15.63106 -15.56382 -15.36265 -14.70488 -14.47745 -14.38529 -13.74497 -13.47508 -13.32869 -13.09654 -12.79317 -12.68380 -12.55802 -12.19962 -12.00205 -11.89318 -11.68430 -11.58347 -10.61404 -10.52550 -10.42709 -9.65293 -9.33356 -9.09019 -8.56854 -6.31900 0.93113 1.56945 1.63888 1.75003 1.83941 2.03842 2.58871 3.04598 3.19945 3.33093 3.65438 3.91178 4.04493 4.20608 4.31118 4.34357 4.44026 4.51168 4.59826 4.62379 4.69092 4.74080 4.83891 4.89502 4.90128 5.03759 5.10054 5.15975 5.33978 5.61181 5.80770 5.96337 6.05476 6.13633 6.45409 6.48587 6.50631 6.72189 6.73852 7.49697 8.79134 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.034104 B = 0.005725 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.822781 B = 4890.072134 C = 5397.786423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.550 5.550 3 C 0.057 3.943 4 C 0.079 3.921 5 N -0.543 5.543 6 C 0.132 3.868 7 C 0.070 3.930 8 C -0.283 4.283 9 C 0.079 3.921 10 N -0.468 5.468 11 H 0.453 0.547 12 N -0.326 5.326 13 C 0.089 3.911 14 C 0.211 3.789 15 H -0.026 1.026 16 C -0.593 4.593 17 H 0.049 0.951 18 C -0.024 4.024 19 N -0.933 5.933 20 Si 1.114 2.886 21 H -0.285 1.285 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.000 1.000 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.018 0.982 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.097 0.903 32 H 0.037 0.963 33 H 0.154 0.846 34 H 0.225 0.775 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.581 13.197 -5.144 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.275 5.275 3 C -0.072 4.072 4 C -0.050 4.050 5 N -0.268 5.268 6 C 0.003 3.997 7 C -0.096 4.096 8 C -0.312 4.312 9 C -0.069 4.069 10 N -0.178 5.178 11 H 0.299 0.701 12 N -0.152 5.152 13 C -0.040 4.040 14 C 0.104 3.896 15 H -0.008 1.008 16 C -0.632 4.632 17 H 0.067 0.933 18 C -0.223 4.223 19 N -0.569 5.569 20 Si 0.936 3.064 21 H -0.210 1.210 22 H -0.198 1.198 23 H -0.197 1.197 24 H 0.018 0.982 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.036 0.964 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.055 0.945 33 H 0.171 0.829 34 H 0.241 0.759 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.067 11.787 -5.440 15.284 hybrid contribution 0.642 1.605 -0.191 1.739 sum 8.709 13.392 -5.630 16.938 Atomic orbital electron populations 1.22048 0.87297 1.01872 0.98481 1.62192 1.08371 1.12263 1.44691 1.22199 0.94873 0.90191 0.99923 1.21983 0.93960 0.98076 0.90936 1.62398 1.06562 1.14781 1.43090 1.20451 0.87260 0.90226 1.01741 1.22058 0.99131 0.96842 0.91541 1.21705 1.13911 0.94500 1.01116 1.23215 0.98926 1.00909 0.83856 1.46375 1.52066 1.11724 1.07611 0.70058 1.77275 1.21946 0.93248 1.22776 1.22134 0.96825 0.86884 0.98146 1.19247 0.90573 0.93203 0.86625 1.00833 1.22063 1.45785 0.99065 0.96308 0.93291 1.27202 0.95754 1.07753 0.91583 1.70881 1.37659 1.20316 1.28089 0.82963 0.76486 0.70856 0.76058 1.21010 1.19753 1.19715 0.98154 0.90349 0.92165 0.96414 0.89093 0.89967 0.95786 0.88482 0.94519 0.82855 0.75867 0.93028 0.96544 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.16 9.19 127.69 1.17 3.33 16 2 N -0.55 -25.46 4.77 -900.98 -4.30 -29.76 16 3 C 0.06 2.25 5.61 86.31 0.48 2.73 16 4 C 0.08 3.05 4.96 86.31 0.43 3.48 16 5 N -0.54 -22.59 4.85 -900.29 -4.37 -26.96 16 6 C 0.13 4.68 5.85 85.56 0.50 5.18 16 7 C 0.07 2.15 5.21 43.10 0.22 2.37 16 8 C -0.28 -6.94 10.74 21.99 0.24 -6.71 16 9 C 0.08 1.32 11.99 83.54 1.00 2.32 16 10 N -0.47 -8.95 7.36 -57.59 -0.42 -9.38 16 11 H 0.45 5.17 8.96 -213.33 -1.91 3.25 16 12 N -0.33 -9.59 11.46 -47.39 -0.54 -10.14 16 13 C 0.09 4.33 4.76 86.31 0.41 4.74 16 14 C 0.21 11.20 1.56 44.18 0.07 11.27 16 15 H -0.03 -1.56 6.96 -2.39 -0.02 -1.57 16 16 C -0.59 -33.63 7.20 25.60 0.18 -33.45 16 17 H 0.05 2.80 7.52 -2.91 -0.02 2.78 16 18 C -0.02 -1.35 5.46 84.65 0.46 -0.89 16 19 N -0.93 -56.84 13.59 21.45 0.29 -56.55 16 20 Si 1.11 50.26 29.90 68.60 2.05 52.31 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H 0.00 -0.01 8.13 -2.39 -0.02 -0.03 16 25 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 26 H 0.06 2.68 7.03 -2.39 -0.02 2.67 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.09 3.05 8.08 -2.39 -0.02 3.03 16 29 H 0.08 2.97 5.99 -2.39 -0.01 2.96 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 32 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.05 2.69 7.67 -2.39 -0.02 2.67 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.26 16.15 6.30 -92.71 -0.58 15.57 16 Total: -1.00 -71.23 297.23 -2.79 -74.02 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -0.67 Total: 12.07 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.18 Total: -5.62 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -9.35 Total: -132.78 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -71.23 -2.79 -74.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871502.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.107 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds