Wall clock time and date at job start Mon Mar 30 2020 03:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40063 * 125.90646 * 2 1 4 4 C 1.32929 * 108.12219 * 180.27254 * 3 2 1 5 5 C 1.41399 * 126.06085 * 179.72345 * 4 3 2 6 6 H 1.08003 * 120.00161 * 174.31465 * 5 4 3 7 7 C 1.39813 * 120.00273 * 354.31616 * 5 4 3 8 8 N 1.30905 * 119.99825 * 6.03052 * 7 5 4 9 9 Si 1.86803 * 119.99966 * 186.02638 * 7 5 4 10 10 H 1.48492 * 109.46852 * 94.98110 * 9 7 5 11 11 H 1.48496 * 109.46820 * 214.98150 * 9 7 5 12 12 H 1.48497 * 109.47180 * 334.98241 * 9 7 5 13 13 C 1.41672 * 107.87599 * 359.74778 * 4 3 2 14 14 C 1.35522 * 107.80811 * 359.97438 * 13 4 3 15 15 N 1.39091 * 125.99493 * 180.02562 * 14 13 4 16 16 C 1.46960 * 111.00290 * 0.02784 * 15 14 13 17 17 C 1.53050 * 109.36270 * 183.19106 * 16 15 14 18 18 N 1.46958 * 109.36232 * 301.59427 * 17 16 15 19 19 C 1.46905 * 110.99729 * 183.19238 * 18 17 16 20 20 C 1.46950 * 110.87890 * 59.32494 * 18 17 16 21 21 C 1.46954 * 111.00028 * 123.82796 * 15 14 13 22 22 H 1.08999 * 109.46724 * 270.17640 * 1 2 3 23 23 H 1.08997 * 109.47315 * 30.17513 * 1 2 3 24 24 H 1.09004 * 109.47281 * 150.17785 * 1 2 3 25 25 H 0.96998 * 120.00225 * 180.02562 * 8 7 5 26 26 H 1.07998 * 126.09327 * 180.02562 * 13 4 3 27 27 H 1.08992 * 109.49100 * 63.22246 * 16 15 14 28 28 H 1.08998 * 109.50203 * 303.16555 * 16 15 14 29 29 H 1.09007 * 109.48383 * 181.63069 * 17 16 15 30 30 H 1.09001 * 109.49374 * 61.56623 * 17 16 15 31 31 H 1.09000 * 109.47415 * 60.00045 * 19 18 17 32 32 H 1.08999 * 109.46812 * 299.99799 * 19 18 17 33 33 H 1.09004 * 109.46786 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.49342 * 60.64905 * 20 18 17 35 35 H 1.09010 * 109.48979 * 180.70808 * 20 18 17 36 36 H 1.09001 * 109.48832 * 296.77911 * 21 15 14 37 37 H 1.08997 * 109.49005 * 56.84368 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2864 1.1345 0.0000 4 6 3.5522 0.7285 -0.0060 5 6 4.6938 1.5627 -0.0136 6 1 5.6795 1.1300 0.0746 7 6 4.5469 2.9478 -0.1352 8 7 3.3521 3.4827 -0.1233 9 14 6.0553 4.0349 -0.3147 10 1 6.3118 4.2917 -1.7546 11 1 5.8222 5.3241 0.3843 12 1 7.2310 3.3529 0.2836 13 6 3.5545 -0.6882 -0.0040 14 6 2.2649 -1.1048 0.0038 15 7 1.8329 -2.4269 0.0086 16 6 2.9734 -3.3537 0.0047 17 6 2.4576 -4.7927 -0.0702 18 7 1.5744 -5.0540 1.0749 19 6 1.1181 -6.4504 1.0799 20 6 0.4339 -4.1272 1.0788 21 6 0.9496 -2.6882 1.1537 22 1 -0.3633 0.0032 1.0277 23 1 -0.3634 0.8884 -0.5165 24 1 -0.3634 -0.8916 -0.5111 25 1 3.2501 4.4436 -0.2080 26 1 4.4282 -1.3231 -0.0073 27 1 3.5522 -3.2220 0.9188 28 1 3.6059 -3.1487 -0.8590 29 1 3.3009 -5.4830 -0.0440 30 1 1.9018 -4.9321 -0.9975 31 1 1.9802 -7.1141 1.1450 32 1 0.5693 -6.6565 0.1611 33 1 0.4658 -6.6163 1.9374 34 1 -0.1450 -4.2590 0.1647 35 1 -0.1984 -4.3324 1.9427 36 1 1.5054 -2.5488 2.0809 37 1 0.1065 -1.9980 1.1275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:51 Heat of formation + Delta-G solvation = 96.925773 kcal Electronic energy + Delta-G solvation = -18671.056636 eV Core-core repulsion = 15871.416484 eV Total energy + Delta-G solvation = -2799.640152 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99391 -38.28980 -35.04087 -33.34215 -31.77833 -30.60228 -29.05153 -27.01822 -26.26758 -24.38335 -23.47536 -23.33305 -20.16098 -19.47586 -18.61591 -16.96686 -15.65533 -15.25800 -15.12007 -14.86986 -14.81375 -14.48938 -14.21968 -13.65271 -13.25140 -12.73357 -12.54900 -12.37407 -12.21075 -11.79083 -11.53596 -11.50105 -11.18097 -11.04997 -11.01095 -10.77193 -10.63108 -10.29779 -9.91500 -9.28628 -8.72915 -8.40885 -8.31949 -7.37337 -6.68642 -6.27427 -4.20159 3.17548 3.26845 3.28566 3.31159 3.80700 3.86453 4.21950 4.43141 4.57994 4.89790 4.96073 5.14155 5.27321 5.38582 5.46402 5.49039 5.58149 5.64862 5.69211 5.74260 5.77476 5.94745 5.96490 6.06275 6.15059 6.19810 6.63054 6.82461 6.88761 6.95854 7.10631 7.29637 7.49151 7.71337 7.93681 8.50451 8.77045 9.06057 9.28782 10.01384 10.70170 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.042515 B = 0.005257 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.435488 B = 5324.866687 C = 5850.376728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.420 5.420 3 N -0.315 5.315 4 C 0.219 3.781 5 C -0.447 4.447 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.777 5.777 9 Si 0.906 3.094 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.265 1.265 13 C -0.333 4.333 14 C 0.231 3.769 15 N -0.476 5.476 16 C 0.070 3.930 17 C 0.057 3.943 18 N -0.546 5.546 19 C 0.026 3.974 20 C 0.059 3.941 21 C 0.053 3.947 22 H 0.045 0.955 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.269 0.731 26 H 0.118 0.882 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.140 -14.517 1.308 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.204 5.204 3 N -0.144 5.144 4 C 0.065 3.935 5 C -0.486 4.486 6 H 0.097 0.903 7 C -0.146 4.146 8 N -0.406 5.406 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.189 1.189 13 C -0.366 4.366 14 C 0.013 3.987 15 N -0.197 5.197 16 C -0.058 4.058 17 C -0.071 4.071 18 N -0.271 5.271 19 C -0.122 4.122 20 C -0.069 4.069 21 C -0.075 4.075 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.266 -13.408 1.313 14.858 hybrid contribution 1.048 -0.234 -0.230 1.099 sum -5.217 -13.642 1.084 14.646 Atomic orbital electron populations 1.21287 0.78276 1.02151 1.00379 1.48906 1.04630 1.03585 1.63316 1.79013 1.00415 0.98102 1.36850 1.19236 0.92269 0.89609 0.92398 1.18597 0.91710 0.90219 1.48124 0.90324 1.25786 0.96438 0.98666 0.93730 1.69967 1.22503 1.11877 1.36235 0.86353 0.82425 0.79397 0.78699 1.19979 1.20680 1.18914 1.21081 0.93247 0.96493 1.25822 1.19105 0.91065 0.83744 1.04799 1.58850 1.19060 1.01128 1.40683 1.22127 0.91562 0.89561 1.02578 1.22238 0.96687 0.96634 0.91539 1.62159 1.18368 1.03583 1.42993 1.22336 1.00326 0.89171 1.00370 1.22180 0.92092 0.91774 1.00855 1.22315 0.97202 0.95692 0.92247 0.93653 0.90800 0.91814 0.92063 0.86438 0.92833 0.89376 0.90046 0.94025 0.91372 0.95727 0.91500 0.94055 0.90292 0.93346 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.29 9.66 59.85 0.58 2.87 16 2 N -0.42 -10.24 4.05 -67.15 -0.27 -10.51 16 3 N -0.32 -9.25 10.84 32.24 0.35 -8.90 16 4 C 0.22 6.39 6.75 -84.88 -0.57 5.82 16 5 C -0.45 -12.92 9.39 -37.79 -0.35 -13.28 16 6 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 7 C 0.07 2.01 5.49 -17.36 -0.10 1.92 16 8 N -0.78 -22.67 11.96 55.54 0.66 -22.01 16 9 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 13 C -0.33 -8.42 9.50 -39.24 -0.37 -8.80 16 14 C 0.23 5.29 6.42 -152.71 -0.98 4.31 16 15 N -0.48 -8.62 4.70 -172.97 -0.81 -9.43 16 16 C 0.07 1.10 4.50 -3.77 -0.02 1.09 16 17 C 0.06 0.72 5.62 -3.77 -0.02 0.70 16 18 N -0.55 -6.72 4.97 -242.74 -1.21 -7.92 16 19 C 0.03 0.24 9.60 60.07 0.58 0.82 16 20 C 0.06 0.73 5.62 -3.77 -0.02 0.71 16 21 C 0.05 0.82 5.37 -3.77 -0.02 0.80 16 22 H 0.05 0.76 7.70 -51.93 -0.40 0.36 16 23 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.06 1.03 7.53 -51.93 -0.39 0.64 16 25 H 0.27 7.19 8.30 -40.82 -0.34 6.85 16 26 H 0.12 2.72 7.10 -52.49 -0.37 2.34 16 27 H 0.05 0.90 7.94 -51.93 -0.41 0.49 16 28 H 0.09 1.41 7.57 -51.93 -0.39 1.01 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.83 8.13 -51.92 -0.42 0.41 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.25 5.17 -51.93 -0.27 0.98 16 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -33.29 297.72 -8.70 -42.00 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.59 Total: 0.02 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.30 Total: -3.04 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: -1.28 Total: -58.78 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.29 -8.70 -42.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.922 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds