Wall clock time and date at job start Mon Mar 30 2020 03:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47344 * 2 1 4 4 C 1.38405 * 119.99522 * 180.02562 * 3 2 1 5 5 N 1.32503 * 119.21966 * 359.97438 * 4 3 2 6 6 C 1.32269 * 120.73790 * 179.97438 * 5 4 3 7 7 C 1.38629 * 119.19510 * 0.02562 * 6 5 4 8 8 C 1.38580 * 118.55892 * 0.27673 * 7 6 5 9 9 C 1.50703 * 120.39868 * 179.70160 * 8 7 6 10 10 N 1.46896 * 109.47141 * 94.99753 * 9 8 7 11 11 C 1.46899 * 111.00141 * 293.95095 * 10 9 8 12 12 C 1.46900 * 111.00045 * 169.99986 * 10 9 8 13 13 C 1.50697 * 109.47202 * 190.00002 * 12 10 9 14 14 H 1.07994 * 120.00171 * 359.97438 * 13 12 10 15 15 C 1.37878 * 120.00096 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00190 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99710 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47111 * 90.00408 * 17 15 13 19 19 H 1.48509 * 109.46993 * 210.00079 * 17 15 13 20 20 H 1.48497 * 109.47482 * 330.00384 * 17 15 13 21 21 N 1.32288 * 119.19605 * 359.43588 * 8 7 6 22 22 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47127 * 300.00731 * 1 2 3 24 24 H 1.09000 * 109.46917 * 60.00119 * 1 2 3 25 25 H 1.08999 * 109.47127 * 239.99269 * 2 1 3 26 26 H 1.09003 * 109.46426 * 120.00450 * 2 1 3 27 27 H 0.96999 * 119.99965 * 359.97438 * 3 2 1 28 28 H 1.07993 * 120.40051 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.71605 * 179.97438 * 7 6 5 30 30 H 1.09005 * 109.46972 * 214.99725 * 9 8 7 31 31 H 1.09000 * 109.46971 * 334.99647 * 9 8 7 32 32 H 1.08998 * 109.47306 * 60.00025 * 11 10 9 33 33 H 1.08997 * 109.47516 * 180.02562 * 11 10 9 34 34 H 1.09006 * 109.46954 * 300.00200 * 11 10 9 35 35 H 1.09009 * 109.47097 * 309.99928 * 12 10 9 36 36 H 1.08999 * 109.47135 * 69.99682 * 12 10 9 37 37 H 0.97005 * 119.99732 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3792 1.6339 -0.0005 5 7 4.2263 0.6151 -0.0005 6 6 5.5327 0.8221 -0.0015 7 6 6.0112 2.1231 -0.0021 8 6 5.0975 3.1650 0.0044 9 6 5.5720 4.5954 0.0108 10 7 5.6098 5.1050 -1.3664 11 6 6.6273 4.4029 -2.1598 12 6 5.8369 6.5562 -1.3847 13 6 5.6265 7.0800 -2.7820 14 1 5.3519 6.4026 -3.5770 15 6 5.7855 8.4240 -3.0457 16 7 5.6014 8.8812 -4.2650 17 14 6.2612 9.5956 -1.6707 18 1 7.7410 9.6901 -1.5907 19 1 5.6935 10.9398 -1.9472 20 1 5.7272 9.0884 -0.3812 21 7 3.8038 2.8889 -0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.3881 2.1185 -0.0004 28 1 6.2182 -0.0124 -0.0019 29 1 7.0730 2.3204 -0.0025 30 1 4.8881 5.2024 0.6042 31 1 6.5710 4.6448 0.4441 32 1 6.3957 3.3381 -2.1874 33 1 6.6344 4.7999 -3.1749 34 1 7.6073 4.5499 -1.7057 35 1 5.1367 7.0422 -0.7052 36 1 6.8579 6.7682 -1.0671 37 1 5.7129 9.8268 -4.4503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304567036.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:10 Heat of formation + Delta-G solvation = 39.970484 kcal Electronic energy + Delta-G solvation = -17840.011957 eV Core-core repulsion = 15037.902039 eV Total energy + Delta-G solvation = -2802.109919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.90299 -38.62505 -37.22515 -34.98349 -34.33577 -33.03083 -30.46166 -29.74896 -28.73280 -26.16184 -24.46791 -24.15733 -22.70249 -21.77764 -19.15930 -18.88972 -18.07191 -16.84874 -16.49645 -16.35543 -16.09130 -16.02215 -15.65790 -15.26130 -15.07446 -14.68254 -14.37976 -13.73439 -13.42250 -13.16497 -13.03634 -12.69459 -12.66981 -12.57592 -12.53804 -12.12677 -11.83724 -11.78806 -11.62784 -11.47081 -11.12128 -10.77924 -10.01844 -9.09347 -8.97216 -8.27300 -6.31334 0.20037 0.34317 1.36394 1.39282 1.50082 1.96698 2.36145 2.86774 3.06156 3.21054 3.41596 3.67621 3.84788 4.14284 4.26334 4.27945 4.34903 4.45875 4.52415 4.55633 4.63348 4.68665 4.87259 4.90409 4.95547 5.01340 5.07856 5.17787 5.24075 5.41705 5.52936 5.93249 5.96407 6.20746 6.30898 6.54785 6.61047 6.74416 7.32047 7.43898 8.89588 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.004540 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.417167 B = 6166.549911 C = 6618.950821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 N -0.702 5.702 4 C 0.543 3.457 5 N -0.584 5.584 6 C 0.189 3.811 7 C -0.281 4.281 8 C 0.220 3.780 9 C 0.099 3.901 10 N -0.544 5.544 11 C 0.042 3.958 12 C 0.174 3.826 13 C -0.518 4.518 14 H 0.033 0.967 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.950 3.050 18 H -0.264 1.264 19 H -0.283 1.283 20 H -0.247 1.247 21 N -0.585 5.585 22 H 0.093 0.907 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.414 0.586 28 H 0.206 0.794 29 H 0.166 0.834 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.030 0.970 36 H -0.002 1.002 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -18.167 13.194 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.013 3.987 3 N -0.341 5.341 4 C 0.186 3.814 5 N -0.308 5.308 6 C 0.022 3.978 7 C -0.307 4.307 8 C 0.071 3.929 9 C -0.029 4.029 10 N -0.269 5.269 11 C -0.106 4.106 12 C 0.048 3.952 13 C -0.556 4.556 14 H 0.051 0.949 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.773 3.227 18 H -0.188 1.188 19 H -0.209 1.209 20 H -0.171 1.171 21 N -0.309 5.309 22 H 0.112 0.888 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.251 0.749 28 H 0.223 0.777 29 H 0.184 0.816 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.016 0.984 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.906 -18.501 12.880 22.878 hybrid contribution 1.406 1.532 0.160 2.086 sum -2.500 -16.969 13.040 21.546 Atomic orbital electron populations 1.21980 0.92452 1.04313 1.02801 1.21310 0.95328 0.80461 1.01644 1.44363 1.00544 1.09847 1.79349 1.19664 0.88205 0.84682 0.88883 1.67967 1.04981 1.34524 1.23331 1.23551 0.90415 0.97216 0.86568 1.22651 1.02850 0.94029 1.11186 1.21360 0.87686 0.96523 0.87301 1.21046 1.00685 0.90207 0.90993 1.61712 1.49548 1.05191 1.10467 1.22213 0.92431 0.97841 0.98125 1.19961 0.94596 0.84721 0.95968 1.21237 1.46346 0.93501 0.94529 0.94897 1.25878 0.94901 1.00029 0.98206 1.70061 1.51621 1.15241 1.22136 0.85670 0.79242 0.77750 0.79999 1.18843 1.20868 1.17060 1.67652 1.19135 1.21489 1.22593 0.88834 0.91555 0.92068 0.92529 0.91857 0.74877 0.77698 0.81643 0.90025 0.90761 0.91587 0.93526 0.94509 0.95170 0.98390 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 10.03 71.98 0.72 -1.23 16 2 C 0.14 2.51 6.37 86.38 0.55 3.06 16 3 N -0.70 -17.52 5.70 -351.04 -2.00 -19.52 16 4 C 0.54 16.71 8.42 261.49 2.20 18.92 16 5 N -0.58 -16.05 9.59 -197.98 -1.90 -17.95 16 6 C 0.19 4.20 11.30 84.72 0.96 5.16 16 7 C -0.28 -6.87 8.51 22.44 0.19 -6.68 16 8 C 0.22 7.01 5.66 42.57 0.24 7.25 16 9 C 0.10 3.34 5.33 85.56 0.46 3.80 16 10 N -0.54 -23.16 4.74 -931.64 -4.42 -27.58 16 11 C 0.04 1.61 9.04 127.69 1.15 2.76 16 12 C 0.17 8.40 3.79 85.56 0.32 8.72 16 13 C -0.52 -30.49 9.01 25.60 0.23 -30.26 16 14 H 0.03 2.19 7.37 -2.91 -0.02 2.17 16 15 C 0.01 0.41 5.47 84.65 0.46 0.87 16 16 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 17 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 18 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 21 N -0.59 -20.42 10.40 -186.05 -1.93 -22.36 16 22 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.41 9.76 8.59 -92.71 -0.80 8.97 16 28 H 0.21 2.63 8.06 -2.91 -0.02 2.60 16 29 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.08 2.84 7.93 -2.38 -0.02 2.82 16 31 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 32 H 0.07 2.25 6.42 -2.39 -0.02 2.23 16 33 H 0.05 2.09 6.76 -2.39 -0.02 2.07 16 34 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.03 1.45 6.99 -2.38 -0.02 1.44 16 36 H 0.00 -0.07 7.55 -2.39 -0.02 -0.09 16 37 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -73.59 308.46 -0.37 -73.96 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.21 Total: 15.11 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 7.49 Total: 12.36 kcal Atomic # 7 Polarization: -137.28 SS G_CDS: -9.96 Total: -147.24 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -73.59 -0.37 -73.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304567036.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.930 kcal (2) G-P(sol) polarization free energy of solvation -73.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds