Wall clock time and date at job start Mon Mar 30 2020 04:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 120.00026 * 2 1 4 4 H 1.48495 * 109.46891 * 269.72389 * 3 2 1 5 5 H 1.48502 * 109.46957 * 29.72277 * 3 2 1 6 6 H 1.48496 * 109.47241 * 149.72332 * 3 2 1 7 7 C 1.37878 * 120.00333 * 179.72236 * 2 1 3 8 8 H 1.07994 * 120.00297 * 175.19379 * 7 2 1 9 9 C 1.50700 * 119.99700 * 355.19468 * 7 2 1 10 10 C 1.52998 * 115.55172 * 39.98992 * 9 7 2 11 11 N 1.46899 * 109.47007 * 54.85347 * 10 9 7 12 12 C 1.46901 * 111.00221 * 184.96292 * 11 10 9 13 13 H 1.09005 * 109.63161 * 39.45084 * 12 11 10 14 14 C 1.53157 * 109.63234 * 278.86208 * 12 11 10 15 15 C 1.52994 * 110.09219 * 186.29532 * 14 12 11 16 16 N 1.47672 * 109.28772 * 55.21127 * 15 14 12 17 17 C 1.48246 * 108.91383 * 47.08584 * 16 15 14 18 18 C 1.56380 * 106.91080 * 271.88039 * 17 16 15 19 19 C 1.54009 * 109.63641 * 159.84751 * 12 11 10 20 20 H 1.08997 * 113.03403 * 307.57442 * 19 12 11 21 21 C 1.48806 * 108.08207 * 293.32396 * 16 15 14 22 22 C 1.53000 * 117.49773 * 254.28294 * 9 7 2 23 23 C 1.53003 * 117.49579 * 185.65812 * 9 7 2 24 24 H 0.96998 * 119.99684 * 5.27768 * 1 2 3 25 25 H 1.08999 * 109.47223 * 174.85346 * 10 9 7 26 26 H 1.09007 * 109.47057 * 294.85759 * 10 9 7 27 27 H 1.00898 * 111.00647 * 308.91650 * 11 10 9 28 28 H 1.08998 * 109.36658 * 306.48607 * 14 12 11 29 29 H 1.08996 * 109.36727 * 66.10556 * 14 12 11 30 30 H 1.09002 * 109.49927 * 295.26481 * 15 14 12 31 31 H 1.08997 * 109.53216 * 175.17431 * 15 14 12 32 32 H 1.08996 * 110.00880 * 31.14650 * 17 16 15 33 33 H 1.08995 * 110.01122 * 152.47960 * 17 16 15 34 34 H 1.09000 * 110.63323 * 240.59100 * 18 17 16 35 35 H 1.08996 * 111.18374 * 117.51372 * 18 17 16 36 36 H 1.09003 * 110.93228 * 315.32294 * 21 16 15 37 37 H 1.09004 * 110.96218 * 191.67514 * 21 16 15 38 38 H 1.08996 * 117.50030 * 359.97438 * 22 9 7 39 39 H 1.08998 * 117.49932 * 145.02866 * 22 9 7 40 40 H 1.08999 * 117.49792 * 214.97421 * 23 9 7 41 41 H 1.08995 * 117.49890 * 0.02562 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4437 2.6544 0.6942 6 1 3.5437 1.4420 0.7059 7 6 2.0046 -1.1940 0.0058 8 1 3.0817 -1.1960 -0.0726 9 6 1.2551 -2.4963 0.1214 10 6 -0.0518 -2.5781 -0.6700 11 7 0.2102 -2.2662 -2.0814 12 6 -1.0401 -2.2195 -2.8511 13 1 -1.8188 -1.7418 -2.2564 14 6 -1.4699 -3.6422 -3.2213 15 6 -2.6823 -3.5992 -4.1535 16 7 -2.3636 -2.7657 -5.3301 17 6 -1.0362 -3.1644 -5.8561 18 6 0.0303 -2.3139 -5.0915 19 6 -0.8188 -1.4222 -4.1500 20 1 -0.3798 -0.4396 -3.9777 21 6 -2.1940 -1.3611 -4.8688 22 6 1.3163 -3.2299 1.4627 23 6 2.0810 -3.7772 0.2557 24 1 -0.4849 0.8365 -0.0773 25 1 -0.4623 -3.5846 -0.5905 26 1 -0.7666 -1.8611 -0.2661 27 1 0.7227 -1.4018 -2.1717 28 1 -0.6460 -4.1496 -3.7230 29 1 -1.7301 -4.1886 -2.3148 30 1 -3.5334 -3.1711 -3.6239 31 1 -2.9275 -4.6100 -4.4793 32 1 -0.8655 -4.2251 -5.6723 33 1 -0.9811 -2.9577 -6.9249 34 1 0.6000 -1.6972 -5.7866 35 1 0.6989 -2.9497 -4.5113 36 1 -2.9850 -1.0815 -4.1729 37 1 -2.1612 -0.6742 -5.7145 38 1 1.8990 -2.7709 2.2613 39 1 0.4255 -3.7710 1.7815 40 1 1.6931 -4.6782 -0.2194 41 1 3.1664 -3.6779 0.2608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381482716.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:28 Heat of formation + Delta-G solvation = 19.829347 kcal Electronic energy + Delta-G solvation = -19659.970714 eV Core-core repulsion = 16960.527754 eV Total energy + Delta-G solvation = -2699.442961 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65150 -38.70991 -35.58945 -34.16240 -32.72245 -30.93007 -29.91295 -27.63777 -26.15822 -24.53238 -23.06363 -22.76252 -21.46343 -20.87492 -20.07613 -18.13877 -17.16593 -16.84297 -16.61664 -15.91262 -15.71090 -15.28915 -15.00252 -14.56429 -14.15139 -13.73745 -13.43307 -13.27384 -13.21763 -13.13792 -12.95014 -12.72632 -12.59233 -12.27530 -12.09265 -12.04238 -11.94796 -11.62207 -11.37083 -11.23201 -11.06481 -10.85381 -10.55830 -10.08376 -9.49993 -8.94092 -7.93501 -6.19298 1.39073 1.43175 1.50945 2.39912 2.99869 3.10879 3.48127 3.67944 3.77316 3.94257 4.08405 4.21924 4.26514 4.31774 4.39022 4.45161 4.55290 4.61285 4.66039 4.73789 4.85178 4.89985 4.94420 4.96752 5.01024 5.08258 5.10937 5.13135 5.15754 5.26389 5.32091 5.39462 5.50035 5.55430 5.62388 5.86580 6.00025 6.01735 6.43682 6.63097 6.78947 6.96482 7.43916 8.90706 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.007555 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.375902 B = 3705.296217 C = 4381.791590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.033 3.967 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.047 0.953 9 C 0.026 3.974 10 C 0.118 3.882 11 N -0.664 5.664 12 C 0.098 3.902 13 H 0.009 0.991 14 C -0.133 4.133 15 C 0.040 3.960 16 N -0.499 5.499 17 C 0.034 3.966 18 C -0.134 4.134 19 C -0.125 4.125 20 H 0.070 0.930 21 C 0.039 3.961 22 C -0.208 4.208 23 C -0.185 4.185 24 H 0.258 0.742 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.339 0.661 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -4.209 -9.932 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.012 4.012 11 N -0.295 5.295 12 C -0.013 4.013 13 H 0.027 0.973 14 C -0.172 4.172 15 C -0.089 4.089 16 N -0.219 5.219 17 C -0.095 4.095 18 C -0.173 4.173 19 C -0.145 4.145 20 H 0.089 0.911 21 C -0.090 4.090 22 C -0.246 4.246 23 C -0.223 4.223 24 H 0.068 0.932 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.158 0.842 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.736 -4.813 -10.467 12.456 hybrid contribution 0.883 1.855 1.654 2.638 sum -3.853 -2.958 -8.813 10.063 Atomic orbital electron populations 1.70014 1.06493 1.26737 1.50443 1.25533 0.95561 1.01309 0.94267 0.85712 0.78598 0.80010 0.78299 1.19850 1.21306 1.20096 1.20729 0.92481 0.90320 1.49926 0.93486 1.19148 0.94579 0.90205 0.93543 1.21260 0.96189 0.95993 0.87724 1.60602 1.18797 1.40123 1.09938 1.21655 0.91223 0.95211 0.93176 0.97303 1.22175 0.99057 0.96351 0.99658 1.22576 0.96581 0.99211 0.90580 1.66453 1.27197 1.02590 1.25706 1.23495 0.86658 0.99544 0.99761 1.23216 0.98167 0.98376 0.97503 1.23153 0.97703 0.98231 0.95445 0.91120 1.23516 0.94898 0.91745 0.98832 1.22949 1.01657 1.06857 0.93152 1.22774 0.97409 0.99000 1.03082 0.93200 0.95998 0.93169 0.84203 0.90904 0.93239 0.91173 0.89010 0.90686 0.89164 0.91162 0.91184 0.90944 0.88758 0.91275 0.90750 0.90026 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.69 10.32 21.45 0.22 -47.46 16 2 C 0.03 1.73 4.77 84.66 0.40 2.14 16 3 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.50 -26.38 8.17 25.60 0.21 -26.17 16 8 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.03 1.27 2.11 -52.93 -0.11 1.16 16 10 C 0.12 5.53 4.62 86.30 0.40 5.93 16 11 N -0.66 -28.36 5.88 -489.53 -2.88 -31.24 16 12 C 0.10 3.54 2.14 45.31 0.10 3.64 16 13 H 0.01 0.37 7.74 -2.38 -0.02 0.35 16 14 C -0.13 -4.10 4.93 30.64 0.15 -3.95 16 15 C 0.04 1.01 5.84 86.15 0.50 1.52 16 16 N -0.50 -12.60 6.07 -873.48 -5.30 -17.90 16 17 C 0.03 0.79 6.25 87.22 0.55 1.34 16 18 C -0.13 -3.68 6.01 32.45 0.19 -3.48 16 19 C -0.13 -3.91 3.66 -8.99 -0.03 -3.94 16 20 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 21 C 0.04 1.03 6.41 86.72 0.56 1.59 16 22 C -0.21 -9.45 9.96 30.60 0.30 -9.14 16 23 C -0.19 -8.11 9.92 30.60 0.30 -7.80 16 24 H 0.26 13.29 8.32 -92.71 -0.77 12.51 16 25 H 0.02 0.99 7.43 -2.39 -0.02 0.97 16 26 H 0.05 2.66 5.71 -2.38 -0.01 2.65 16 27 H 0.34 16.16 6.69 -89.70 -0.60 15.56 16 28 H 0.07 2.25 5.40 -2.39 -0.01 2.24 16 29 H 0.05 1.61 7.53 -2.39 -0.02 1.59 16 30 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 1.68 6.94 -2.39 -0.02 1.67 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.07 2.20 6.65 -2.39 -0.02 2.19 16 36 H 0.07 1.98 7.70 -2.39 -0.02 1.96 16 37 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -53.50 306.94 -2.00 -55.50 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.40 Total: 34.31 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.52 Total: -37.17 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -7.95 Total: -96.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -53.50 -2.00 -55.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381482716.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.327 kcal (2) G-P(sol) polarization free energy of solvation -53.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds