Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47446 * 270.00379 * 3 2 1 5 5 H 1.48503 * 109.47090 * 30.00247 * 3 2 1 6 6 H 1.48501 * 109.47077 * 150.00212 * 3 2 1 7 7 C 1.37879 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99557 * 184.44492 * 7 2 1 9 9 C 1.50697 * 120.00188 * 4.44256 * 7 2 1 10 10 C 1.53005 * 115.54785 * 324.42474 * 9 7 2 11 11 N 1.46904 * 109.46926 * 305.96733 * 10 9 7 12 12 C 1.46900 * 110.99859 * 184.89616 * 11 10 9 13 13 H 1.09002 * 109.62966 * 320.50414 * 12 11 10 14 14 C 1.53155 * 109.63032 * 80.89827 * 12 11 10 15 15 C 1.52988 * 109.99370 * 65.96803 * 14 12 11 16 16 N 1.47510 * 108.70352 * 56.63248 * 15 14 12 17 17 C 1.48237 * 110.43975 * 45.47360 * 16 15 14 18 18 C 1.54061 * 106.69944 * 272.34098 * 17 16 15 19 19 C 1.54008 * 109.79404 * 200.00565 * 12 11 10 20 20 H 1.08995 * 113.03616 * 68.06685 * 19 12 11 21 21 C 1.51046 * 106.78793 * 291.24507 * 16 15 14 22 22 C 1.52991 * 117.49935 * 110.09019 * 9 7 2 23 23 C 1.52996 * 117.49926 * 178.75530 * 9 7 2 24 24 H 0.97003 * 120.00043 * 4.99976 * 1 2 3 25 25 H 1.09006 * 109.47008 * 185.97237 * 10 9 7 26 26 H 1.08999 * 109.47158 * 65.96822 * 10 9 7 27 27 H 1.00900 * 110.99979 * 308.85252 * 11 10 9 28 28 H 1.09001 * 109.36646 * 186.09703 * 14 12 11 29 29 H 1.09009 * 109.36253 * 305.83721 * 14 12 11 30 30 H 1.08996 * 109.50323 * 175.09707 * 15 14 12 31 31 H 1.09000 * 109.50025 * 295.20960 * 15 14 12 32 32 H 1.09006 * 110.01180 * 153.02784 * 17 16 15 33 33 H 1.08999 * 110.01429 * 31.65774 * 17 16 15 34 34 H 1.09004 * 110.37897 * 240.16690 * 18 17 16 35 35 H 1.08997 * 110.37902 * 117.81314 * 18 17 16 36 36 H 1.08998 * 111.94832 * 317.12919 * 21 16 15 37 37 H 1.09001 * 110.87166 * 192.76424 * 21 16 15 38 38 H 1.09000 * 117.50272 * 215.00318 * 22 9 7 39 39 H 1.09004 * 117.49856 * 0.02646 * 22 9 7 40 40 H 1.08994 * 117.50133 * 359.97062 * 23 9 7 41 41 H 1.09001 * 117.50101 * 144.97537 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0821 -1.1955 0.0720 9 6 1.2545 -2.4972 -0.1022 10 6 -0.0988 -2.5370 0.6107 11 7 0.0758 -2.1425 2.0150 12 6 -1.1822 -2.2803 2.7608 13 1 -2.0152 -1.9564 2.1369 14 6 -1.3820 -3.7436 3.1667 15 6 -0.3036 -4.1604 4.1687 16 7 -0.3536 -3.2461 5.3252 17 6 -1.7549 -3.0417 5.7632 18 6 -2.3106 -1.8670 4.9357 19 6 -1.1279 -1.4218 4.0383 20 1 -1.1240 -0.3514 3.8329 21 6 0.1171 -1.8970 4.8355 22 6 1.3914 -3.2915 -1.4025 23 6 2.0781 -3.7863 -0.1270 24 1 -0.4850 0.8369 -0.0732 25 1 -0.5039 -3.5479 0.5650 26 1 -0.7871 -1.8472 0.1224 27 1 0.8147 -2.6739 2.4507 28 1 -2.3646 -3.8610 3.6236 29 1 -1.3170 -4.3763 2.2815 30 1 -0.5034 -5.1733 4.5180 31 1 0.6734 -4.1273 3.6864 32 1 -1.7818 -2.7959 6.8249 33 1 -2.3401 -3.9415 5.5735 34 1 -2.6171 -1.0522 5.5916 35 1 -3.1489 -2.1977 4.3226 36 1 0.9875 -1.9808 4.1847 37 1 0.3214 -1.2296 5.6727 38 1 0.5176 -3.8425 -1.7502 39 1 2.0245 -2.8718 -2.1844 40 1 3.1624 -3.6919 -0.0703 41 1 1.6561 -4.6627 0.3648 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381482718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = 32.426416 kcal Electronic energy + Delta-G solvation = -19850.303694 eV Core-core repulsion = 17151.406983 eV Total energy + Delta-G solvation = -2698.896711 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.78271 -38.63514 -35.49995 -33.99862 -32.74930 -30.94074 -29.91165 -27.47776 -25.96742 -24.50748 -23.61435 -22.89266 -21.35730 -20.73808 -19.63351 -18.30872 -17.20640 -16.91672 -16.57079 -15.99110 -15.43307 -15.28228 -14.87029 -14.46590 -14.31742 -13.78053 -13.50092 -13.38696 -13.13849 -12.92194 -12.79814 -12.78177 -12.47863 -12.26381 -12.03450 -11.97635 -11.88123 -11.75244 -11.43956 -11.35941 -11.01539 -10.71310 -10.49331 -9.98673 -9.38915 -8.69962 -7.77821 -5.97223 1.45097 1.48563 1.55615 2.52120 3.09766 3.15712 3.50827 3.73286 3.84963 3.91563 4.02739 4.14180 4.19480 4.25285 4.39161 4.52852 4.56056 4.58547 4.68703 4.72869 4.77453 4.84977 4.93027 4.93703 4.97101 5.02990 5.07994 5.14385 5.19039 5.27740 5.29026 5.38097 5.44077 5.55175 5.73028 5.83533 6.07611 6.15403 6.49214 6.70361 7.01659 7.04356 7.64808 9.11254 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.022786 B = 0.008084 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.511752 B = 3462.796494 C = 4145.788619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.052 3.948 3 Si 0.940 3.060 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.038 0.962 9 C 0.029 3.971 10 C 0.129 3.871 11 N -0.646 5.646 12 C 0.099 3.901 13 H 0.050 0.950 14 C -0.178 4.178 15 C 0.042 3.958 16 N -0.504 5.504 17 C 0.035 3.965 18 C -0.138 4.138 19 C -0.107 4.107 20 H 0.071 0.929 21 C 0.034 3.966 22 C -0.210 4.210 23 C -0.198 4.198 24 H 0.251 0.749 25 H -0.021 1.021 26 H 0.083 0.917 27 H 0.321 0.679 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -5.801 9.656 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.151 4.151 3 Si 0.767 3.233 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.000 4.000 11 N -0.276 5.276 12 C -0.012 4.012 13 H 0.068 0.932 14 C -0.218 4.218 15 C -0.087 4.087 16 N -0.226 5.226 17 C -0.093 4.093 18 C -0.177 4.177 19 C -0.127 4.127 20 H 0.089 0.911 21 C -0.094 4.094 22 C -0.248 4.248 23 C -0.236 4.236 24 H 0.061 0.939 25 H -0.003 1.003 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.137 -5.256 10.071 12.468 hybrid contribution -0.020 0.310 -1.267 1.305 sum -5.157 -4.945 8.804 11.338 Atomic orbital electron populations 1.70020 1.06274 1.25736 1.48845 1.25295 0.95331 1.00566 0.93868 0.85869 0.78813 0.81115 0.77459 1.20981 1.21368 1.20231 1.20458 0.91518 0.90349 1.51275 0.94341 1.19200 0.93995 0.89596 0.94375 1.21342 0.96562 0.93400 0.88647 1.60207 1.05035 1.60886 1.01437 1.21666 0.92680 0.92866 0.93947 0.93208 1.22868 1.01051 0.98006 0.99895 1.22428 0.98311 0.97531 0.90463 1.66784 1.18884 1.07993 1.28931 1.23076 0.88388 0.97839 1.00038 1.22902 0.97511 0.99211 0.98091 1.22878 0.95972 0.99104 0.94773 0.91066 1.23838 0.97200 0.90690 0.97663 1.22970 1.02061 1.07233 0.92581 1.22892 0.98219 0.99691 1.02763 0.93939 1.00310 0.89873 0.85966 0.90134 0.92966 0.89699 0.91761 0.89205 0.90344 0.90392 0.91212 0.90873 0.89909 0.90749 0.91212 0.90858 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.43 10.12 21.45 0.22 -47.21 16 2 C 0.05 2.78 5.31 84.66 0.45 3.23 16 3 Si 0.94 43.71 29.54 68.60 2.03 45.74 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.50 -27.02 8.74 25.60 0.22 -26.79 16 8 H 0.04 2.13 7.82 -2.91 -0.02 2.11 16 9 C 0.03 1.41 2.06 -52.93 -0.11 1.30 16 10 C 0.13 5.96 4.44 86.30 0.38 6.35 16 11 N -0.65 -27.01 5.19 -489.51 -2.54 -29.55 16 12 C 0.10 3.47 2.42 45.31 0.11 3.58 16 13 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 14 C -0.18 -5.11 5.07 30.64 0.16 -4.96 16 15 C 0.04 1.13 5.67 86.18 0.49 1.62 16 16 N -0.50 -13.44 6.07 -872.46 -5.30 -18.74 16 17 C 0.03 0.76 6.23 86.40 0.54 1.30 16 18 C -0.14 -3.28 5.91 31.63 0.19 -3.09 16 19 C -0.11 -3.33 4.05 -8.98 -0.04 -3.37 16 20 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 21 C 0.03 1.02 6.45 86.27 0.56 1.58 16 22 C -0.21 -9.39 9.96 30.62 0.30 -9.09 16 23 C -0.20 -8.41 9.92 30.62 0.30 -8.11 16 24 H 0.25 13.31 8.32 -92.71 -0.77 12.54 16 25 H -0.02 -0.91 6.94 -2.38 -0.02 -0.92 16 26 H 0.08 4.39 5.95 -2.39 -0.01 4.37 16 27 H 0.32 13.21 5.34 -89.69 -0.48 12.73 16 28 H 0.08 2.04 5.36 -2.39 -0.01 2.02 16 29 H 0.05 1.61 7.02 -2.38 -0.02 1.59 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 1.93 6.51 -2.39 -0.02 1.91 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 1.55 6.97 -2.39 -0.02 1.53 16 34 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 1.62 7.00 -2.39 -0.02 1.61 16 36 H 0.07 2.53 5.96 -2.39 -0.01 2.51 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 41 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -55.29 302.87 -1.51 -56.80 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.53 Total: 29.41 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 3.56 Total: -36.45 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -7.62 Total: -95.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -55.29 -1.51 -56.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381482718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.225 kcal (2) G-P(sol) polarization free energy of solvation -55.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds