Wall clock time and date at job start Mon Mar 30 2020 04:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47407 * 270.00098 * 3 2 1 5 5 H 1.48500 * 109.47303 * 30.00507 * 3 2 1 6 6 H 1.48502 * 109.47070 * 150.00161 * 3 2 1 7 7 C 1.37881 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99564 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00509 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47393 * 175.11903 * 9 7 2 11 11 C 1.46900 * 111.00286 * 199.23301 * 10 9 7 12 12 C 1.52997 * 117.50109 * 125.04121 * 11 10 9 13 13 C 1.53002 * 117.50117 * 56.37805 * 11 10 9 14 14 C 1.46898 * 111.00201 * 75.27805 * 10 9 7 15 15 H 1.09005 * 112.88079 * 343.40467 * 14 10 9 16 16 C 1.54238 * 113.66998 * 114.87941 * 14 10 9 17 17 C 1.53945 * 87.19527 * 139.20491 * 16 14 10 18 18 H 1.08997 * 113.66417 * 89.78094 * 17 16 14 19 19 N 1.46900 * 113.66688 * 220.75701 * 17 16 14 20 20 C 1.52910 * 113.66110 * 212.06333 * 14 10 9 21 21 C 1.52904 * 121.13907 * 346.34369 * 20 14 10 22 22 C 1.53958 * 86.78352 * 100.82288 * 21 20 14 23 23 C 1.52913 * 121.13577 * 94.90973 * 20 14 10 24 24 H 0.97000 * 119.99681 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46485 * 55.11953 * 9 7 2 26 26 H 1.08997 * 109.47339 * 295.12361 * 9 7 2 27 27 H 1.08996 * 115.54939 * 270.71402 * 11 10 9 28 28 H 1.08993 * 117.49873 * 359.97438 * 12 11 10 29 29 H 1.09000 * 117.49745 * 145.02533 * 12 11 10 30 30 H 1.08998 * 117.50433 * 214.98562 * 13 11 10 31 31 H 1.09007 * 117.49588 * 359.97438 * 13 11 10 32 32 H 1.09004 * 113.57942 * 24.64729 * 16 14 10 33 33 H 1.09004 * 113.67030 * 253.77591 * 16 14 10 34 34 H 1.00905 * 110.99265 * 278.98394 * 19 17 16 35 35 H 1.00899 * 111.00196 * 42.93428 * 19 17 16 36 36 H 1.08999 * 113.66507 * 215.29010 * 21 20 14 37 37 H 1.08999 * 113.66100 * 346.35193 * 21 20 14 38 38 H 1.09004 * 113.57580 * 270.13331 * 22 21 20 39 39 H 1.08991 * 113.58046 * 139.33885 * 22 21 20 40 40 H 1.08998 * 113.66562 * 13.64991 * 23 20 14 41 41 H 1.08997 * 113.66175 * 144.70482 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 7 4.0012 -2.5740 0.1162 11 6 5.3977 -2.6002 0.5713 12 6 5.7185 -3.4241 1.8199 13 6 5.7247 -1.8949 1.8891 14 6 3.8477 -3.2969 -1.1533 15 1 3.1595 -2.8048 -1.8407 16 6 5.1874 -3.7034 -1.8005 17 6 4.5226 -5.0460 -2.1541 18 1 4.0251 -5.0459 -3.1239 19 7 5.4013 -6.2076 -1.9628 20 6 3.5771 -4.7918 -0.9794 21 6 3.7877 -5.4819 0.3687 22 6 2.2622 -5.3911 0.5554 23 6 2.1505 -5.3424 -0.9793 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6066 0.8420 26 1 3.8746 -0.7576 -0.9316 27 1 6.1497 -2.5676 -0.2170 28 1 4.8934 -3.9463 2.3040 29 1 6.6818 -3.9331 1.8532 30 1 6.6920 -1.3986 1.9678 31 1 4.9037 -1.4110 2.4182 32 1 6.0059 -3.7967 -1.0866 33 1 5.4518 -3.1047 -2.6722 34 1 6.0254 -6.3219 -2.7474 35 1 5.9167 -6.1327 -1.0986 36 1 4.1579 -6.5036 0.2841 37 1 4.3523 -4.8830 1.0832 38 1 1.9368 -4.4735 1.0456 39 1 1.8229 -6.2858 0.9964 40 1 1.4074 -4.6320 -1.3415 41 1 2.0607 -6.3248 -1.4428 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405279236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:53 Heat of formation + Delta-G solvation = 73.536720 kcal Electronic energy + Delta-G solvation = -19855.264895 eV Core-core repulsion = 17158.150861 eV Total energy + Delta-G solvation = -2697.114034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.88129 -38.51285 -36.07990 -35.39539 -33.99497 -31.78083 -28.91839 -26.58227 -25.59021 -24.52024 -23.66002 -22.94056 -22.04075 -20.42398 -18.95552 -18.59243 -17.54498 -17.11570 -16.71531 -16.12598 -15.83303 -15.45257 -15.04537 -14.69327 -14.22135 -14.12883 -13.80780 -13.59065 -13.16378 -13.01447 -12.80239 -12.64613 -12.55228 -12.27280 -12.06861 -11.83732 -11.70501 -11.57668 -11.17940 -11.07655 -10.84984 -10.79109 -10.66325 -10.55945 -9.38460 -8.80762 -8.27474 -6.29003 1.30575 1.32502 1.42963 2.32676 2.95707 3.02671 3.13848 3.60655 3.69937 3.73285 3.91501 3.98494 4.09120 4.16501 4.18544 4.20657 4.46915 4.61869 4.64759 4.70167 4.82452 4.85042 4.87692 4.93524 4.98877 5.02155 5.05778 5.13259 5.15001 5.18422 5.31940 5.40721 5.55622 5.58865 5.74707 5.82818 6.09105 6.33692 6.50533 6.73888 6.78454 6.79157 7.33944 8.89503 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021867 B = 0.008269 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.176526 B = 3385.531526 C = 3833.102407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.503 4.503 8 H 0.035 0.965 9 C 0.174 3.826 10 N -0.491 5.491 11 C -0.013 4.013 12 C -0.147 4.147 13 C -0.187 4.187 14 C 0.086 3.914 15 H 0.059 0.941 16 C -0.194 4.194 17 C 0.099 3.901 18 H 0.094 0.906 19 N -0.828 5.828 20 C -0.077 4.077 21 C -0.102 4.102 22 C -0.135 4.135 23 C -0.129 4.129 24 H 0.265 0.735 25 H 0.031 0.969 26 H -0.022 1.022 27 H 0.106 0.894 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.349 0.651 35 H 0.347 0.653 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.030 0.970 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.761 -9.782 -1.146 18.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.767 3.233 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.047 3.953 10 N -0.213 5.213 11 C -0.121 4.121 12 C -0.185 4.185 13 C -0.225 4.225 14 C -0.024 4.024 15 H 0.077 0.923 16 C -0.235 4.235 17 C -0.014 4.014 18 H 0.112 0.888 19 N -0.358 5.358 20 C -0.078 4.078 21 C -0.139 4.139 22 C -0.172 4.172 23 C -0.166 4.166 24 H 0.073 0.927 25 H 0.049 0.951 26 H -0.005 1.005 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.049 0.951 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.654 -10.343 -0.786 17.954 hybrid contribution 0.311 2.391 -0.748 2.525 sum 14.965 -7.952 -1.534 17.016 Atomic orbital electron populations 1.70060 1.08079 1.27818 1.53181 1.25807 0.95521 1.02904 0.94780 0.85784 0.79572 0.79057 0.78936 1.19596 1.20833 1.17197 1.21269 0.91222 0.92942 1.48768 0.94673 1.19964 0.93834 0.87127 0.94389 1.61607 1.16383 1.14641 1.28621 1.22823 0.90568 1.07120 0.91609 1.23185 1.02979 0.92719 0.99576 1.23103 1.02579 0.96454 1.00343 1.22717 0.96769 0.93241 0.89658 0.92287 1.24500 0.98231 0.99882 1.00846 1.22304 0.94257 0.87235 0.97628 0.88804 1.58560 1.27610 1.41278 1.08329 1.22623 0.94797 0.93882 0.96522 1.22627 0.95543 1.00348 0.95401 1.22618 0.98450 1.00226 0.95925 1.22686 0.96591 1.00242 0.97114 0.92654 0.95083 1.00457 0.87649 0.89082 0.85984 0.86952 0.90958 0.87245 0.91936 0.83742 0.83884 0.88798 0.89249 0.93345 0.91486 0.95088 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.94 44.99 27.57 68.60 1.89 46.88 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.01 6.40 99.48 0.64 -10.37 16 7 C -0.50 -29.57 9.30 25.60 0.24 -29.33 16 8 H 0.03 2.33 8.06 -2.91 -0.02 2.30 16 9 C 0.17 8.37 3.65 85.56 0.31 8.68 16 10 N -0.49 -19.47 4.01 -848.16 -3.40 -22.87 16 11 C -0.01 -0.39 3.92 44.91 0.18 -0.21 16 12 C -0.15 -3.66 8.75 30.62 0.27 -3.40 16 13 C -0.19 -5.39 9.52 30.62 0.29 -5.10 16 14 C 0.09 3.16 3.62 45.31 0.16 3.32 16 15 H 0.06 2.64 7.52 -2.38 -0.02 2.63 16 16 C -0.19 -5.18 6.43 31.33 0.20 -4.98 16 17 C 0.10 2.49 4.88 45.21 0.22 2.71 16 18 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 19 N -0.83 -15.94 9.12 -167.47 -1.53 -17.46 16 20 C -0.08 -2.40 1.06 -52.31 -0.06 -2.46 16 21 C -0.10 -2.95 6.71 30.89 0.21 -2.74 16 22 C -0.13 -4.67 8.08 31.23 0.25 -4.41 16 23 C -0.13 -4.46 7.84 30.89 0.24 -4.22 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.03 1.50 5.12 -2.38 -0.01 1.49 16 26 H -0.02 -1.08 7.68 -2.39 -0.02 -1.10 16 27 H 0.11 2.85 5.53 -2.39 -0.01 2.84 16 28 H 0.09 2.56 6.52 -2.39 -0.02 2.54 16 29 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.51 7.36 -2.38 -0.02 2.49 16 32 H 0.11 2.56 5.24 -2.39 -0.01 2.55 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.35 5.25 9.08 -89.69 -0.81 4.43 16 35 H 0.35 6.04 8.08 -89.69 -0.72 5.32 16 36 H 0.09 2.33 7.59 -2.39 -0.02 2.31 16 37 H 0.09 2.58 3.21 -2.39 -0.01 2.57 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -67.24 308.93 -0.32 -67.57 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -0.57 Total: 27.56 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 2.98 Total: -41.28 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.63 Total: -100.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.89 Total: 46.88 kcal Total: -67.24 -0.32 -67.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405279236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.102 kcal (2) G-P(sol) polarization free energy of solvation -67.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds