Wall clock time and date at job start Mon Mar 30 2020 04:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00173 * 2 1 4 4 H 1.48497 * 109.47104 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47194 * 240.00314 * 3 2 1 6 6 H 1.48501 * 109.46997 * 120.00226 * 3 2 1 7 7 C 1.37874 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99893 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47022 * 175.03507 * 9 7 2 11 11 C 1.46904 * 110.99682 * 287.97659 * 10 9 7 12 12 C 1.52996 * 117.49973 * 248.82177 * 11 10 9 13 13 C 1.52994 * 60.00151 * 252.51594 * 12 11 10 14 14 C 1.46896 * 110.99759 * 164.02842 * 10 9 7 15 15 H 1.08998 * 112.88630 * 157.68859 * 14 10 9 16 16 C 1.53944 * 113.66642 * 26.21305 * 14 10 9 17 17 C 1.53949 * 87.29923 * 220.79410 * 16 14 10 18 18 H 1.08997 * 113.66713 * 270.26288 * 17 16 14 19 19 N 1.46901 * 113.74538 * 139.21623 * 17 16 14 20 20 C 1.52909 * 86.78023 * 24.73425 * 17 16 14 21 21 C 1.52910 * 121.13792 * 100.81765 * 20 17 16 22 22 C 1.53942 * 86.78291 * 100.81930 * 21 20 17 23 23 C 1.52903 * 121.13724 * 209.37883 * 20 17 16 24 24 H 0.97000 * 120.00226 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47033 * 295.03331 * 9 7 2 26 26 H 1.08998 * 109.47038 * 55.03764 * 9 7 2 27 27 H 1.09000 * 115.55368 * 34.53920 * 11 10 9 28 28 H 1.08996 * 117.50025 * 0.02562 * 12 11 10 29 29 H 1.09004 * 117.49725 * 145.02114 * 12 11 10 30 30 H 1.09002 * 117.50033 * 252.51127 * 13 12 11 31 31 H 1.09001 * 117.49904 * 107.49384 * 13 12 11 32 32 H 1.08999 * 113.58143 * 335.40199 * 16 14 10 33 33 H 1.09006 * 113.57729 * 106.19420 * 16 14 10 34 34 H 1.00891 * 111.00497 * 82.77461 * 19 17 16 35 35 H 1.00905 * 110.99957 * 206.73284 * 19 17 16 36 36 H 1.09003 * 113.66273 * 215.29655 * 21 20 17 37 37 H 1.09000 * 113.66326 * 346.34642 * 21 20 17 38 38 H 1.09003 * 113.58493 * 270.12913 * 22 21 20 39 39 H 1.09002 * 113.65157 * 139.34713 * 22 21 20 40 40 H 1.08996 * 113.66546 * 13.65059 * 23 20 17 41 41 H 1.09003 * 113.66705 * 144.61442 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2010 -3.6131 -0.1210 11 6 2.7644 -3.6802 -1.4761 12 6 2.3598 -4.8680 -2.3514 13 6 3.7721 -4.7939 -1.7677 14 6 1.5691 -4.8863 0.2500 15 1 2.0765 -5.7515 -0.1767 16 6 0.0430 -4.9007 0.0483 17 6 -0.0531 -5.6604 1.3837 18 1 -0.0032 -6.7439 1.2753 19 7 -1.1675 -5.2222 2.2347 20 6 1.2859 -5.0177 1.7469 21 6 1.3546 -3.8036 2.6740 22 6 1.7551 -4.7866 3.7890 23 6 2.2730 -5.7201 2.6797 24 1 -0.4850 -0.8400 -0.0004 25 1 0.6931 -2.5966 0.9308 26 1 0.5590 -2.5191 -0.8425 27 1 2.9183 -2.7205 -1.9693 28 1 1.6753 -5.5995 -1.9220 29 1 2.2472 -4.6898 -3.4208 30 1 4.5887 -4.5670 -2.4531 31 1 4.0170 -5.4769 -0.9542 32 1 -0.4099 -3.9097 0.0768 33 1 -0.2776 -5.4886 -0.8119 34 1 -2.0293 -5.6697 1.9609 35 1 -0.9664 -5.3905 3.2090 36 1 2.1412 -3.0963 2.4110 37 1 0.3898 -3.3242 2.8393 38 1 0.9057 -5.1921 4.3388 39 1 2.5409 -4.4091 4.4433 40 1 2.0418 -6.7716 2.8496 41 1 3.3177 -5.5528 2.4175 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405279237.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:56 Heat of formation + Delta-G solvation = 82.841771 kcal Electronic energy + Delta-G solvation = -19876.096573 eV Core-core repulsion = 17179.386036 eV Total energy + Delta-G solvation = -2696.710537 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71849 -37.45400 -34.58307 -33.68496 -32.18932 -30.28720 -26.13582 -25.24025 -24.27001 -22.96644 -22.45884 -21.81578 -20.44546 -19.10017 -17.60450 -16.56496 -16.10655 -15.65503 -15.42704 -14.56023 -14.29750 -14.02663 -13.66631 -13.19959 -12.96714 -12.30362 -12.09462 -11.82251 -11.51614 -11.35076 -11.29529 -10.99690 -10.88418 -10.83471 -10.62339 -10.40965 -10.19272 -10.04145 -9.73643 -9.66779 -9.57680 -9.27306 -8.53625 -8.45016 -8.25626 -7.08910 -6.26483 -3.95259 3.49032 3.51113 3.69587 4.32260 4.56221 4.63452 4.77088 4.78854 5.04088 5.08671 5.14897 5.29497 5.38789 5.41122 5.49862 5.52610 5.68111 5.76094 5.80491 5.88381 5.99972 6.01704 6.14658 6.20788 6.27512 6.31923 6.43226 6.51587 6.61881 6.72077 6.81676 6.93204 7.07485 7.17657 7.21803 7.42430 7.60767 7.94731 8.11962 8.42112 8.69434 8.97575 9.74863 11.12007 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.017975 B = 0.008776 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.351714 B = 3189.572742 C = 3851.508510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.068 2.932 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.054 0.946 9 C 0.180 3.820 10 N -0.482 5.482 11 C 0.057 3.943 12 C -0.233 4.233 13 C -0.187 4.187 14 C 0.070 3.930 15 H 0.089 0.911 16 C -0.160 4.160 17 C 0.082 3.918 18 H 0.052 0.948 19 N -0.830 5.830 20 C -0.082 4.082 21 C -0.094 4.094 22 C -0.144 4.144 23 C -0.126 4.126 24 H 0.267 0.733 25 H 0.042 0.958 26 H -0.017 1.017 27 H 0.123 0.877 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.335 0.665 35 H 0.337 0.663 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 -12.558 2.532 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.897 3.103 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.073 0.927 9 C 0.055 3.945 10 N -0.201 5.201 11 C -0.053 4.053 12 C -0.272 4.272 13 C -0.225 4.225 14 C -0.040 4.040 15 H 0.107 0.893 16 C -0.199 4.199 17 C -0.029 4.029 18 H 0.070 0.930 19 N -0.359 5.359 20 C -0.083 4.083 21 C -0.131 4.131 22 C -0.182 4.182 23 C -0.164 4.164 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.001 0.999 27 H 0.140 0.860 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.364 -10.056 2.597 10.652 hybrid contribution -0.526 -3.087 -0.415 3.159 sum 1.838 -13.143 2.182 13.449 Atomic orbital electron populations 1.70777 1.06837 1.30475 1.47007 1.25738 0.96490 1.02425 0.94204 0.83547 0.74817 0.75477 0.76441 1.20992 1.21672 1.21480 1.21995 0.94760 0.91056 1.54770 0.92729 1.20046 0.90492 0.87985 0.95944 1.61764 1.35487 1.02407 1.20425 1.22621 0.99450 0.93340 0.89904 1.23568 0.98559 1.05283 0.99817 1.23012 0.92451 1.04158 1.02890 1.22870 0.91991 0.93922 0.95224 0.89285 1.23839 0.98787 1.02301 0.95019 1.22387 0.90383 0.95202 0.94962 0.93004 1.58728 1.04480 1.65982 1.06749 1.22615 0.93400 0.98319 0.93987 1.22486 1.03038 0.95187 0.92408 1.22886 1.00123 0.98613 0.96579 1.22740 0.99520 0.97284 0.96811 0.92217 0.93988 0.99889 0.85965 0.89082 0.89794 0.89358 0.89437 0.87550 0.92998 0.85330 0.84972 0.88049 0.90774 0.91438 0.92046 0.92830 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.76 13.65 55.43 0.76 -27.00 16 2 C 0.02 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.37 8.52 -34.44 -0.29 -16.66 16 8 H 0.05 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.18 4.49 1.84 -4.97 -0.01 4.48 16 10 N -0.48 -10.14 4.32 -219.61 -0.95 -11.09 16 11 C 0.06 1.12 5.82 -67.71 -0.39 0.73 16 12 C -0.23 -3.84 9.56 -26.74 -0.26 -4.10 16 13 C -0.19 -3.01 9.89 -26.74 -0.26 -3.27 16 14 C 0.07 1.24 2.66 -67.27 -0.18 1.07 16 15 H 0.09 1.49 5.49 -51.93 -0.29 1.21 16 16 C -0.16 -2.81 6.62 -25.75 -0.17 -2.99 16 17 C 0.08 1.23 4.84 -67.26 -0.33 0.91 16 18 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 19 N -0.83 -11.54 8.68 -4.29 -0.04 -11.58 16 20 C -0.08 -1.34 0.98 -154.71 -0.15 -1.49 16 21 C -0.09 -1.71 5.02 -26.29 -0.13 -1.84 16 22 C -0.14 -2.09 7.97 -25.75 -0.21 -2.29 16 23 C -0.13 -1.81 7.84 -26.29 -0.21 -2.02 16 24 H 0.27 8.15 7.19 -40.82 -0.29 7.85 16 25 H 0.04 1.09 4.48 -51.93 -0.23 0.86 16 26 H -0.02 -0.45 6.98 -51.93 -0.36 -0.82 16 27 H 0.12 2.67 7.56 -51.93 -0.39 2.28 16 28 H 0.09 1.47 5.49 -51.93 -0.28 1.18 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.37 7.51 -51.93 -0.39 0.98 16 32 H 0.11 2.26 5.46 -51.93 -0.28 1.97 16 33 H 0.05 0.85 7.80 -51.93 -0.40 0.44 16 34 H 0.33 3.97 9.08 -39.30 -0.36 3.62 16 35 H 0.34 4.21 8.17 -39.29 -0.32 3.89 16 36 H 0.10 2.18 7.27 -51.93 -0.38 1.80 16 37 H 0.07 1.47 7.25 -51.93 -0.38 1.10 16 38 H 0.07 0.87 7.40 -51.93 -0.38 0.48 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -29.28 308.69 -9.83 -39.12 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -6.49 Total: 12.63 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -2.68 Total: -27.14 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.23 Total: -49.67 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.28 -9.83 -39.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405279237.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.958 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds