Wall clock time and date at job start Mon Mar 30 2020 04:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48500 * 109.47164 * 270.00305 * 3 2 1 5 5 H 1.48500 * 109.47248 * 30.00022 * 3 2 1 6 6 H 1.48495 * 109.47392 * 150.00493 * 3 2 1 7 7 C 1.37878 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00128 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47066 * 182.08694 * 9 7 2 11 11 C 1.46897 * 111.00099 * 77.96952 * 10 9 7 12 12 C 1.53007 * 117.49922 * 357.59059 * 11 10 9 13 13 C 1.53004 * 117.49998 * 288.93051 * 11 10 9 14 14 C 1.46900 * 111.00204 * 201.92132 * 10 9 7 15 15 H 1.08989 * 112.88839 * 193.81370 * 14 10 9 16 16 C 1.53959 * 113.66203 * 325.16392 * 14 10 9 17 17 C 1.53941 * 87.29530 * 139.20187 * 16 14 10 18 18 H 1.08997 * 113.66303 * 220.79067 * 17 16 14 19 19 N 1.46907 * 113.66373 * 89.73609 * 17 16 14 20 20 C 1.52912 * 113.66103 * 62.46564 * 14 10 9 21 21 C 1.52912 * 121.13981 * 94.90451 * 20 14 10 22 22 C 1.53953 * 86.78510 * 209.37978 * 21 20 14 23 23 C 1.52917 * 121.13633 * 346.34935 * 20 14 10 24 24 H 0.96996 * 120.00420 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46930 * 62.08632 * 9 7 2 26 26 H 1.08999 * 109.47119 * 302.08737 * 9 7 2 27 27 H 1.09001 * 115.55185 * 143.25356 * 11 10 9 28 28 H 1.09000 * 117.49379 * 359.97438 * 12 11 10 29 29 H 1.08991 * 117.50441 * 145.02285 * 12 11 10 30 30 H 1.08998 * 117.50142 * 214.97820 * 13 11 10 31 31 H 1.08999 * 117.49737 * 359.97244 * 13 11 10 32 32 H 1.08997 * 113.57212 * 253.80751 * 16 14 10 33 33 H 1.09000 * 113.57749 * 24.52117 * 16 14 10 34 34 H 1.00903 * 110.99894 * 79.50303 * 19 17 16 35 35 H 1.00897 * 110.99908 * 203.45584 * 19 17 16 36 36 H 1.09001 * 113.66397 * 323.85531 * 21 20 14 37 37 H 1.09006 * 113.65910 * 94.90720 * 21 20 14 38 38 H 1.08999 * 113.57706 * 270.13664 * 22 21 20 39 39 H 1.09001 * 113.64854 * 139.34993 * 22 21 20 40 40 H 1.09001 * 113.65954 * 265.09055 * 23 20 14 41 41 H 1.08996 * 113.66483 * 36.14611 * 23 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2049 -3.6153 0.0493 11 6 2.7222 -3.8053 1.4110 12 6 2.2539 -2.8245 2.4879 13 6 3.6866 -2.7491 1.9542 14 6 1.5960 -4.8514 -0.4598 15 1 2.1787 -5.7408 -0.2204 16 6 0.0988 -4.9853 -0.1267 17 6 -0.0941 -5.5361 -1.5513 18 1 -0.9923 -5.1659 -2.0455 19 7 0.0508 -6.9950 -1.6440 20 6 1.1765 -4.7694 -1.9279 21 6 2.0990 -5.2637 -3.0427 22 6 1.4372 -4.2037 -3.9419 23 6 1.1035 -3.4264 -2.6556 24 1 -0.4850 0.8400 0.0004 25 1 0.6524 -2.5731 -0.9084 26 1 0.5970 -2.5411 0.8704 27 1 2.8882 -4.8401 1.7107 28 1 1.5624 -2.0380 2.1858 29 1 2.1124 -3.2138 3.4960 30 1 4.4870 -3.0888 2.6115 31 1 3.9377 -1.9134 1.3010 32 1 -0.1102 -5.7155 0.6551 33 1 -0.3971 -4.0298 0.0435 34 1 -0.7892 -7.4621 -1.3367 35 1 0.2978 -7.2750 -2.5814 36 1 3.1557 -5.0769 -2.8512 37 1 1.8982 -6.2888 -3.3544 38 1 0.5572 -4.5690 -4.4714 39 1 2.1387 -3.6849 -4.5952 40 1 0.1074 -2.9838 -2.6580 41 1 1.8803 -2.7233 -2.3553 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405279238.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:59 Heat of formation + Delta-G solvation = 94.151352 kcal Electronic energy + Delta-G solvation = -19904.977996 eV Core-core repulsion = 17208.757879 eV Total energy + Delta-G solvation = -2696.220117 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.53935 -37.27804 -34.73406 -32.96848 -32.29789 -29.62990 -27.20721 -25.17204 -24.16989 -22.90755 -22.35304 -21.29780 -20.26461 -18.71849 -17.18159 -16.73540 -15.75037 -15.42362 -15.18381 -14.64903 -14.37399 -14.19864 -13.50126 -13.03095 -12.75485 -12.22978 -11.84565 -11.62970 -11.50752 -11.33077 -11.16029 -10.98218 -10.87256 -10.66745 -10.42300 -10.16782 -10.01521 -9.79474 -9.55818 -9.47493 -9.29919 -9.12820 -8.85096 -8.43466 -8.28147 -6.89148 -5.98182 -3.97390 3.33502 3.40344 3.44005 4.43454 4.50003 4.74004 4.90775 5.01429 5.09791 5.24900 5.30863 5.36848 5.47612 5.66540 5.83195 5.86334 5.90846 5.96674 6.08583 6.13506 6.20851 6.32236 6.33798 6.41599 6.46774 6.54370 6.56305 6.67846 6.81829 6.99906 7.09627 7.15295 7.29040 7.38024 7.46011 7.54483 7.55644 7.93768 8.24730 8.36032 8.65472 9.11175 9.65411 11.11248 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021655 B = 0.008486 C = 0.007204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.674084 B = 3298.752563 C = 3885.566620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.172 3.828 10 N -0.495 5.495 11 C 0.029 3.971 12 C -0.210 4.210 13 C -0.176 4.176 14 C 0.094 3.906 15 H 0.091 0.909 16 C -0.166 4.166 17 C 0.083 3.917 18 H 0.041 0.959 19 N -0.829 5.829 20 C -0.083 4.083 21 C -0.116 4.116 22 C -0.150 4.150 23 C -0.100 4.100 24 H 0.259 0.741 25 H 0.050 0.950 26 H 0.003 0.997 27 H 0.089 0.911 28 H 0.127 0.873 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.338 0.662 35 H 0.339 0.661 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -10.466 -3.155 10.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.083 0.917 9 C 0.048 3.952 10 N -0.215 5.215 11 C -0.080 4.080 12 C -0.249 4.249 13 C -0.213 4.213 14 C -0.015 4.015 15 H 0.109 0.891 16 C -0.206 4.206 17 C -0.029 4.029 18 H 0.059 0.941 19 N -0.359 5.359 20 C -0.084 4.084 21 C -0.154 4.154 22 C -0.188 4.188 23 C -0.137 4.137 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.107 0.893 28 H 0.145 0.855 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.555 -10.126 -2.941 10.659 hybrid contribution -1.139 0.782 -0.056 1.383 sum 0.416 -9.344 -2.998 9.822 Atomic orbital electron populations 1.69947 1.05878 1.26502 1.51555 1.24932 0.94760 0.98934 0.95880 0.86636 0.79912 0.83736 0.77999 1.20851 1.21524 1.19879 1.21282 0.93557 0.89833 1.48878 0.91681 1.20285 0.90484 0.87001 0.97418 1.61879 1.37797 1.04142 1.17685 1.22314 1.03666 0.93387 0.88671 1.23555 0.99450 1.05160 0.96733 1.23142 0.92034 1.02846 1.03324 1.22780 0.91656 0.93019 0.94076 0.89124 1.23773 1.00514 1.01179 0.95143 1.22072 0.95754 0.87101 0.97952 0.94082 1.58497 1.41192 1.05750 1.30454 1.22612 0.94628 0.97126 0.94077 1.22558 0.99327 0.97396 0.96087 1.22949 0.99916 0.98705 0.97186 1.22722 1.03060 0.95144 0.92794 0.93135 0.93225 0.97945 0.89277 0.85498 0.91440 0.91125 0.87277 0.92259 0.88598 0.84988 0.84810 0.89906 0.92463 0.91643 0.92025 0.91992 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.05 6.75 -34.44 -0.23 -13.29 16 8 H 0.07 1.74 5.73 -52.49 -0.30 1.44 16 9 C 0.17 4.14 1.80 -4.98 -0.01 4.13 16 10 N -0.49 -10.36 4.47 -219.60 -0.98 -11.34 16 11 C 0.03 0.58 6.10 -67.71 -0.41 0.17 16 12 C -0.21 -4.31 9.13 -26.69 -0.24 -4.56 16 13 C -0.18 -3.46 9.87 -26.69 -0.26 -3.73 16 14 C 0.09 1.72 3.64 -67.26 -0.24 1.48 16 15 H 0.09 1.64 7.91 -51.94 -0.41 1.23 16 16 C -0.17 -2.94 7.10 -25.75 -0.18 -3.12 16 17 C 0.08 1.27 4.86 -67.17 -0.33 0.94 16 18 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 19 N -0.83 -10.31 9.35 -4.20 -0.04 -10.35 16 20 C -0.08 -1.39 0.89 -154.60 -0.14 -1.53 16 21 C -0.12 -1.72 7.67 -26.28 -0.20 -1.92 16 22 C -0.15 -2.25 8.08 -25.75 -0.21 -2.46 16 23 C -0.10 -1.84 5.17 -26.28 -0.14 -1.97 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.05 1.24 3.71 -51.93 -0.19 1.04 16 26 H 0.00 0.08 5.53 -51.93 -0.29 -0.21 16 27 H 0.09 1.61 7.81 -51.93 -0.41 1.20 16 28 H 0.13 3.07 5.06 -51.93 -0.26 2.81 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.11 2.41 5.60 -51.93 -0.29 2.12 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.96 5.77 -51.93 -0.30 1.66 16 34 H 0.34 3.60 9.08 -39.29 -0.36 3.24 16 35 H 0.34 3.73 7.76 -39.29 -0.30 3.42 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 0.75 6.86 -51.93 -0.36 0.39 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 41 H 0.11 2.45 6.77 -51.93 -0.35 2.10 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -27.13 305.03 -9.72 -36.85 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.31 Total: 13.23 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.70 Total: -24.44 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.28 Total: -46.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.13 -9.72 -36.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405279238.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.997 kcal (2) G-P(sol) polarization free energy of solvation -27.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds