Wall clock time and date at job start Mon Mar 30 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47228 * 2 1 4 4 C 1.35494 * 126.97458 * 265.02315 * 3 2 1 5 5 N 1.30526 * 107.30379 * 179.97438 * 4 3 2 6 6 N 1.28594 * 109.67136 * 359.97438 * 5 4 3 7 7 C 1.30522 * 109.67487 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.34272 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.49533 * 179.97438 * 8 7 6 10 10 C 1.53037 * 109.49710 * 300.01620 * 8 7 6 11 11 C 1.53045 * 109.53954 * 181.31976 * 10 8 7 12 12 C 1.53191 * 109.31107 * 298.63953 * 11 10 8 13 13 N 1.46926 * 108.77761 * 54.63213 * 12 11 10 14 14 C 1.36931 * 120.62825 * 126.41053 * 13 12 11 15 15 H 1.08004 * 120.00449 * 331.82224 * 14 13 12 16 16 C 1.38815 * 120.00189 * 151.82761 * 14 13 12 17 17 N 1.31624 * 119.99568 * 343.06918 * 16 14 13 18 18 Si 1.86797 * 120.00261 * 163.06797 * 16 14 13 19 19 H 1.48502 * 109.47097 * 90.00183 * 18 16 14 20 20 H 1.48508 * 109.47032 * 210.00069 * 18 16 14 21 21 H 1.48501 * 109.47443 * 330.00018 * 18 16 14 22 22 C 1.46921 * 118.73828 * 306.39115 * 13 12 11 23 23 H 1.09000 * 109.46883 * 60.00210 * 1 2 3 24 24 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47153 * 300.00272 * 1 2 3 26 26 H 1.09003 * 109.47480 * 239.99084 * 2 1 3 27 27 H 1.09007 * 109.46651 * 119.99450 * 2 1 3 28 28 H 1.08002 * 126.34967 * 359.95579 * 4 3 2 29 29 H 1.08996 * 109.46612 * 301.34439 * 10 8 7 30 30 H 1.09009 * 109.45711 * 61.30164 * 10 8 7 31 31 H 1.09000 * 109.49713 * 58.59264 * 11 10 8 32 32 H 1.08997 * 109.49690 * 178.65430 * 11 10 8 33 33 H 1.09004 * 109.58591 * 174.42564 * 12 11 10 34 34 H 1.09003 * 109.58766 * 294.70494 * 12 11 10 35 35 H 0.96996 * 119.99792 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.58828 * 293.82060 * 22 13 12 37 37 H 1.08999 * 109.58451 * 173.39061 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3785 2.1182 -1.0784 5 7 2.7518 3.2899 -0.6407 6 7 2.6458 3.3274 0.6403 7 6 2.2006 2.1812 1.0781 8 6 1.9383 1.8155 2.5163 9 1 1.5711 0.7906 2.5699 10 6 3.2360 1.9353 3.3187 11 6 2.9780 1.5325 4.7725 12 6 1.9418 2.4803 5.3845 13 7 0.7420 2.4808 4.5364 14 6 -0.4910 2.2202 5.0719 15 1 -0.5781 1.5935 5.9472 16 6 -1.6291 2.7613 4.4898 17 7 -1.5230 3.7707 3.6517 18 14 -3.3109 2.0571 4.8959 19 1 -3.8752 2.7691 6.0706 20 1 -4.2149 2.2310 3.7305 21 1 -3.1798 0.6115 5.2092 22 6 0.8904 2.7666 3.1029 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.3605 1.7959 -2.1090 29 1 3.9912 1.2777 2.8882 30 1 3.5901 2.9657 3.2847 31 1 2.6004 0.5105 4.8052 32 1 3.9078 1.5951 5.3378 33 1 1.6810 2.1389 6.3863 34 1 2.3545 3.4878 5.4377 35 1 -2.3183 4.1491 3.2452 36 1 1.2165 3.7978 2.9677 37 1 -0.0641 2.6139 2.5992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407949364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:12 Heat of formation + Delta-G solvation = 90.269612 kcal Electronic energy + Delta-G solvation = -19192.624954 eV Core-core repulsion = 16392.696169 eV Total energy + Delta-G solvation = -2799.928785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.74134 -37.58426 -35.55068 -33.35312 -31.74607 -30.45849 -29.96851 -28.55633 -25.27136 -24.17721 -23.04372 -22.11440 -21.80218 -20.12523 -18.86301 -17.07995 -16.60507 -15.71482 -15.09497 -14.87954 -14.42437 -14.03244 -13.72507 -13.57070 -13.03936 -12.95469 -12.66505 -12.32607 -12.24571 -11.77426 -11.40403 -11.06748 -11.00071 -10.75227 -10.60468 -10.47818 -10.27326 -9.96792 -9.89655 -9.86098 -9.75293 -9.57574 -8.68371 -8.49416 -6.69132 -5.80683 -3.24408 2.18805 2.75683 3.32448 3.35168 3.41385 3.42636 4.45371 4.53720 4.72962 4.77874 4.89996 5.07059 5.28611 5.39143 5.52251 5.56027 5.58090 5.65984 5.72547 5.80077 6.02032 6.13019 6.20994 6.26509 6.33963 6.48228 6.56845 6.59372 6.79639 6.81542 7.02700 7.21015 7.31228 7.66574 7.77025 8.41599 9.17417 9.18213 9.81266 10.38941 11.27155 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.008371 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.929781 B = 3343.897550 C = 3982.612742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.477 5.477 4 C 0.128 3.872 5 N -0.302 5.302 6 N -0.294 5.294 7 C 0.210 3.790 8 C -0.030 4.030 9 H 0.076 0.924 10 C -0.096 4.096 11 C -0.132 4.132 12 C 0.142 3.858 13 N -0.590 5.590 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.189 3.811 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.210 0.790 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.021 0.979 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -10.159 -6.627 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.169 5.169 4 C -0.159 4.159 5 N -0.141 5.141 6 N -0.133 5.133 7 C -0.058 4.058 8 C -0.053 4.053 9 H 0.094 0.906 10 C -0.135 4.135 11 C -0.172 4.172 12 C 0.015 3.985 13 N -0.312 5.312 14 C -0.386 4.386 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.541 5.541 18 Si 0.728 3.272 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.062 3.938 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.227 0.773 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.647 -8.639 -6.720 12.805 hybrid contribution -1.460 -1.728 -0.154 2.267 sum 5.188 -10.366 -6.874 13.477 Atomic orbital electron populations 1.22194 0.93488 1.03327 1.04133 1.21846 0.96228 0.79269 1.04511 1.46437 1.49264 1.13942 1.07223 1.26216 1.04489 0.90440 0.94760 1.74200 1.18820 1.17006 1.04100 1.74254 1.18668 1.17861 1.02541 1.25215 1.00107 0.87958 0.92515 1.20617 0.99404 1.02164 0.83082 0.90590 1.21383 0.95019 1.01831 0.95255 1.22018 0.99243 1.00593 0.95317 1.20963 0.87726 0.95739 0.94028 1.44014 1.02460 1.82375 1.02347 1.19158 0.82852 1.24025 1.12555 0.91543 1.25088 0.98166 0.96042 1.00237 1.70047 1.28242 1.22651 1.33124 0.86360 0.84353 0.78923 0.77529 1.21242 1.21606 1.20462 1.20720 0.95491 0.93540 0.84082 0.91940 0.90444 0.90591 0.88862 0.88724 0.77335 0.93835 0.91274 0.92451 0.92644 0.92701 0.96069 0.93526 0.94757 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.10 1.10 6.50 -4.04 -0.03 1.08 16 3 N -0.48 -7.13 2.75 -115.30 -0.32 -7.44 16 4 C 0.13 1.90 12.74 -89.94 -1.15 0.75 16 5 N -0.30 -5.85 12.21 29.69 0.36 -5.48 16 6 N -0.29 -6.27 12.21 32.79 0.40 -5.87 16 7 C 0.21 3.95 6.54 -154.99 -1.01 2.94 16 8 C -0.03 -0.57 2.70 -91.66 -0.25 -0.81 16 9 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16 10 C -0.10 -1.69 5.15 -26.69 -0.14 -1.83 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 12 C 0.14 2.95 6.52 -3.71 -0.02 2.92 16 13 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 14 C -0.26 -6.90 9.58 -15.06 -0.14 -7.04 16 15 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 17 N -0.90 -26.16 11.20 55.49 0.62 -25.54 16 18 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.19 4.56 4.57 -3.71 -0.02 4.54 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.95 7.41 -51.93 -0.38 0.56 16 28 H 0.21 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -32.67 301.90 -8.23 -40.90 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -5.67 Total: -0.79 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -2.62 Total: -1.42 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.55 Total: -59.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.67 -8.23 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407949364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.171 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds