Wall clock time and date at job start Mon Mar 30 2020 03:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47228 * 2 1 4 4 C 1.35494 * 126.97458 * 265.02315 * 3 2 1 5 5 N 1.30526 * 107.30379 * 179.97438 * 4 3 2 6 6 N 1.28594 * 109.67136 * 359.97438 * 5 4 3 7 7 C 1.30522 * 109.67487 * 0.02562 * 6 5 4 8 8 C 1.50697 * 126.34272 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.49533 * 179.97438 * 8 7 6 10 10 C 1.53037 * 109.49710 * 300.01620 * 8 7 6 11 11 C 1.53045 * 109.53954 * 181.31976 * 10 8 7 12 12 C 1.53191 * 109.31107 * 298.63953 * 11 10 8 13 13 N 1.46926 * 108.77761 * 54.63213 * 12 11 10 14 14 C 1.36931 * 120.62825 * 126.41053 * 13 12 11 15 15 H 1.08004 * 120.00449 * 331.82224 * 14 13 12 16 16 C 1.38815 * 120.00189 * 151.82761 * 14 13 12 17 17 N 1.31624 * 119.99568 * 343.06918 * 16 14 13 18 18 Si 1.86797 * 120.00261 * 163.06797 * 16 14 13 19 19 H 1.48502 * 109.47097 * 90.00183 * 18 16 14 20 20 H 1.48508 * 109.47032 * 210.00069 * 18 16 14 21 21 H 1.48501 * 109.47443 * 330.00018 * 18 16 14 22 22 C 1.46921 * 118.73828 * 306.39115 * 13 12 11 23 23 H 1.09000 * 109.46883 * 60.00210 * 1 2 3 24 24 H 1.09001 * 109.47329 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47153 * 300.00272 * 1 2 3 26 26 H 1.09003 * 109.47480 * 239.99084 * 2 1 3 27 27 H 1.09007 * 109.46651 * 119.99450 * 2 1 3 28 28 H 1.08002 * 126.34967 * 359.95579 * 4 3 2 29 29 H 1.08996 * 109.46612 * 301.34439 * 10 8 7 30 30 H 1.09009 * 109.45711 * 61.30164 * 10 8 7 31 31 H 1.09000 * 109.49713 * 58.59264 * 11 10 8 32 32 H 1.08997 * 109.49690 * 178.65430 * 11 10 8 33 33 H 1.09004 * 109.58591 * 174.42564 * 12 11 10 34 34 H 1.09003 * 109.58766 * 294.70494 * 12 11 10 35 35 H 0.96996 * 119.99792 * 180.02562 * 17 16 14 36 36 H 1.09001 * 109.58828 * 293.82060 * 22 13 12 37 37 H 1.08999 * 109.58451 * 173.39061 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3785 2.1182 -1.0784 5 7 2.7518 3.2899 -0.6407 6 7 2.6458 3.3274 0.6403 7 6 2.2006 2.1812 1.0781 8 6 1.9383 1.8155 2.5163 9 1 1.5711 0.7906 2.5699 10 6 3.2360 1.9353 3.3187 11 6 2.9780 1.5325 4.7725 12 6 1.9418 2.4803 5.3845 13 7 0.7420 2.4808 4.5364 14 6 -0.4910 2.2202 5.0719 15 1 -0.5781 1.5935 5.9472 16 6 -1.6291 2.7613 4.4898 17 7 -1.5230 3.7707 3.6517 18 14 -3.3109 2.0571 4.8959 19 1 -3.8752 2.7691 6.0706 20 1 -4.2149 2.2310 3.7305 21 1 -3.1798 0.6115 5.2092 22 6 0.8904 2.7666 3.1029 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.3605 1.7959 -2.1090 29 1 3.9912 1.2777 2.8882 30 1 3.5901 2.9657 3.2847 31 1 2.6004 0.5105 4.8052 32 1 3.9078 1.5951 5.3378 33 1 1.6810 2.1389 6.3863 34 1 2.3545 3.4878 5.4377 35 1 -2.3183 4.1491 3.2452 36 1 1.2165 3.7978 2.9677 37 1 -0.0641 2.6139 2.5992 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407949364.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:12 Heat of formation + Delta-G solvation = 70.998153 kcal Electronic energy + Delta-G solvation = -19193.460627 eV Core-core repulsion = 16392.696169 eV Total energy + Delta-G solvation = -2800.764458 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.04929 -39.27190 -36.66894 -35.20046 -33.37746 -31.80317 -31.50620 -30.05660 -27.23312 -25.29719 -24.50769 -23.88104 -23.06312 -21.53686 -20.45473 -18.74400 -18.02410 -17.10692 -16.75468 -16.15301 -15.93485 -15.56625 -15.28365 -14.91821 -14.68139 -14.28210 -14.13390 -13.99537 -13.34448 -13.24204 -12.95638 -12.60298 -12.44693 -12.36334 -12.31168 -12.07416 -12.03390 -11.66103 -11.44993 -11.32374 -11.17291 -11.07211 -10.58170 -10.11356 -8.71335 -7.88486 -5.36184 0.92777 1.45633 1.46156 1.56679 1.65344 1.96496 2.49906 3.23603 3.33493 3.64860 3.78527 3.84631 3.95466 4.03085 4.12102 4.29865 4.31465 4.35752 4.53792 4.59942 4.64927 4.79547 4.81379 4.96046 5.04779 5.10693 5.18421 5.20652 5.27567 5.28684 5.35299 5.50718 5.64148 5.70202 6.07001 6.35764 7.10696 7.81998 7.84009 8.35945 9.17548 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.019728 B = 0.008371 C = 0.007029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.929781 B = 3343.897550 C = 3982.612742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.471 5.471 4 C 0.157 3.843 5 N -0.353 5.353 6 N -0.341 5.341 7 C 0.193 3.807 8 C -0.014 4.014 9 H 0.091 0.909 10 C -0.091 4.091 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.608 5.608 14 C -0.262 4.262 15 H 0.075 0.925 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.262 1.262 22 C 0.207 3.793 23 H 0.061 0.939 24 H 0.107 0.893 25 H 0.029 0.971 26 H 0.143 0.857 27 H 0.103 0.897 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.247 0.753 36 H -0.013 1.013 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -13.484 -7.359 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.023 4.023 3 N -0.162 5.162 4 C -0.131 4.131 5 N -0.191 5.191 6 N -0.180 5.180 7 C -0.077 4.077 8 C -0.036 4.036 9 H 0.109 0.891 10 C -0.130 4.130 11 C -0.157 4.157 12 C 0.008 3.992 13 N -0.331 5.331 14 C -0.392 4.392 15 H 0.093 0.907 16 C -0.247 4.247 17 N -0.583 5.583 18 Si 0.794 3.206 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.186 1.186 22 C 0.080 3.920 23 H 0.080 0.920 24 H 0.126 0.874 25 H 0.048 0.952 26 H 0.161 0.839 27 H 0.122 0.878 28 H 0.281 0.719 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.025 0.975 35 H 0.057 0.943 36 H 0.005 0.995 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.443 -11.999 -7.432 15.956 hybrid contribution -1.685 -0.687 0.033 1.820 sum 5.758 -12.686 -7.399 15.774 Atomic orbital electron populations 1.22167 0.94254 1.04548 1.01779 1.22292 0.95474 0.77073 1.07423 1.46676 1.48306 1.15249 1.05969 1.27207 1.00650 0.88789 0.96489 1.74093 1.21664 1.19838 1.03492 1.74145 1.20230 1.19648 1.03963 1.24966 1.01110 0.88439 0.93184 1.20256 0.98604 1.01010 0.83756 0.89115 1.21353 0.94666 1.01293 0.95656 1.21891 0.99286 0.99711 0.94804 1.21174 0.87409 0.96254 0.94320 1.44305 1.03230 1.82440 1.03088 1.19566 0.83895 1.23281 1.12434 0.90700 1.25895 1.01854 0.96422 1.00569 1.70250 1.28636 1.24527 1.34910 0.85295 0.79619 0.78947 0.76743 1.21216 1.22263 1.18601 1.20250 0.95125 0.92404 0.84219 0.91968 0.87416 0.95214 0.83948 0.87843 0.71937 0.90790 0.93469 0.91231 0.89270 0.91945 0.97507 0.94349 0.99525 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 10.24 71.98 0.74 -2.70 16 2 C 0.10 1.70 6.50 86.38 0.56 2.26 16 3 N -0.47 -13.08 2.75 -518.69 -1.42 -14.51 16 4 C 0.16 4.24 12.74 180.11 2.29 6.53 16 5 N -0.35 -13.59 12.21 -59.99 -0.73 -14.32 16 6 N -0.34 -14.93 12.21 -50.16 -0.61 -15.54 16 7 C 0.19 7.26 6.54 137.98 0.90 8.16 16 8 C -0.01 -0.52 2.70 -11.46 -0.03 -0.55 16 9 H 0.09 3.19 7.02 -2.38 -0.02 3.17 16 10 C -0.09 -3.10 5.15 30.62 0.16 -2.94 16 11 C -0.12 -3.76 6.08 30.67 0.19 -3.57 16 12 C 0.13 5.55 6.52 86.36 0.56 6.11 16 13 N -0.61 -30.87 2.99 -699.10 -2.09 -32.97 16 14 C -0.26 -14.28 9.58 84.04 0.81 -13.48 16 15 H 0.08 3.89 7.89 -2.91 -0.02 3.86 16 16 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 17 N -0.94 -57.43 11.20 21.65 0.24 -57.19 16 18 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 C 0.21 10.52 4.57 86.36 0.39 10.91 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 1.67 7.41 -2.38 -0.02 1.65 16 28 H 0.27 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 37 H 0.05 2.85 6.06 -2.39 -0.01 2.83 16 Total: -1.00 -77.04 301.90 5.44 -71.60 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.04 Total: 8.19 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.99 Total: 8.23 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -4.62 Total: -134.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -77.04 5.44 -71.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407949364.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.597 kcal (2) G-P(sol) polarization free energy of solvation -77.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds