Wall clock time and date at job start Mon Mar 30 2020 04:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 119.99829 * 2 1 4 4 C 1.53002 * 109.47206 * 125.00553 * 3 2 1 5 5 N 1.46499 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.35309 * 125.87027 * 124.97307 * 5 4 3 7 7 C 1.35353 * 106.17498 * 179.97438 * 6 5 4 8 8 C 1.50706 * 126.75076 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.46736 * 94.99777 * 8 7 6 10 10 C 1.46894 * 111.00490 * 293.95573 * 9 8 7 11 11 C 1.46900 * 110.99793 * 169.99605 * 9 8 7 12 12 C 1.50694 * 109.47503 * 190.00035 * 11 9 8 13 13 H 1.08001 * 119.99445 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00521 * 180.02562 * 12 11 9 15 15 N 1.31516 * 119.99729 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00294 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47056 * 59.99943 * 16 14 12 18 18 H 1.48497 * 109.47200 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47055 * 299.99919 * 16 14 12 20 20 N 1.33775 * 106.49785 * 359.97438 * 7 6 5 21 21 N 1.28637 * 108.88137 * 0.02562 * 20 7 6 22 22 H 1.08004 * 119.99932 * 180.02562 * 1 2 3 23 23 H 1.08001 * 120.00207 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.00207 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46993 * 5.00080 * 3 2 1 26 26 H 1.09007 * 109.46996 * 245.00291 * 3 2 1 27 27 H 1.08997 * 109.46834 * 59.99655 * 4 3 2 28 28 H 1.09007 * 109.46928 * 299.99779 * 4 3 2 29 29 H 1.08002 * 126.91313 * 0.02562 * 6 5 4 30 30 H 1.08998 * 109.46953 * 215.00023 * 8 7 6 31 31 H 1.08994 * 109.47138 * 335.00219 * 8 7 6 32 32 H 1.08999 * 109.47185 * 59.99795 * 10 9 8 33 33 H 1.08992 * 109.47509 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.46834 * 300.00518 * 10 9 8 35 35 H 1.08995 * 109.47237 * 310.00842 * 11 9 8 36 36 H 1.09004 * 109.46925 * 70.00352 * 11 9 8 37 37 H 0.96996 * 120.00086 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7671 2.6021 1.1819 6 6 3.8381 3.4761 2.2124 7 6 4.6106 4.5018 1.7843 8 6 4.9909 5.7321 2.5671 9 7 6.3002 5.5244 3.2001 10 6 6.2307 4.4691 4.2196 11 6 6.8128 6.7764 3.7725 12 6 8.2480 6.5870 4.1910 13 1 8.7312 5.6321 4.0458 14 6 8.9443 7.6326 4.7592 15 7 8.3557 8.7953 4.9364 16 14 10.7235 7.3980 5.2772 17 1 11.5388 7.0254 4.0932 18 1 11.2412 8.6633 5.8570 19 1 10.8048 6.3185 6.2937 20 7 4.9702 4.2086 0.5295 21 7 4.4540 3.0767 0.2023 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3585 2.1316 0.0896 26 1 2.6212 1.4027 -0.9315 27 1 3.7400 0.5066 1.0919 28 1 2.4773 1.2356 2.1130 29 1 3.3728 3.3753 3.1818 30 1 5.0441 6.5885 1.8949 31 1 4.2414 5.9196 3.3359 32 1 5.9151 3.5350 3.7547 33 1 7.2130 4.3361 4.6725 34 1 5.5119 4.7533 4.9882 35 1 6.7534 7.5683 3.0259 36 1 6.2142 7.0506 4.6413 37 1 8.8456 9.5311 5.3357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593960776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:00 Heat of formation + Delta-G solvation = 97.957121 kcal Electronic energy + Delta-G solvation = -17548.235621 eV Core-core repulsion = 14748.640191 eV Total energy + Delta-G solvation = -2799.595429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.20001 -38.41851 -37.24887 -34.90616 -34.49361 -32.47744 -30.45007 -29.22598 -28.26802 -25.83760 -25.48579 -22.96117 -22.52696 -21.33232 -20.76302 -18.55948 -18.01838 -17.47367 -16.75789 -16.35286 -16.14774 -15.81935 -15.59879 -15.26775 -14.93202 -14.22033 -13.92881 -13.77633 -13.42714 -13.28461 -12.95943 -12.65533 -12.63549 -12.58624 -12.40991 -12.28488 -12.02300 -11.90685 -11.60052 -11.33890 -10.97907 -10.59491 -10.28194 -10.15846 -8.96337 -8.18111 -6.27814 0.65762 1.27417 1.41650 1.45541 1.51235 1.54460 1.60658 2.42650 3.14135 3.33544 3.52078 3.66142 3.79309 3.98841 4.06939 4.17867 4.28724 4.38231 4.43587 4.52215 4.66613 4.69208 4.79430 4.93275 5.00615 5.06699 5.08939 5.18208 5.22799 5.33015 5.66325 5.69379 5.75417 5.83900 6.07184 6.36520 6.63794 6.87409 7.41257 7.58074 8.92580 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.059845 B = 0.003466 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.763141 B = 8076.197084 C = 8150.980492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 C -0.101 4.101 4 C 0.113 3.887 5 N -0.284 5.284 6 C -0.028 4.028 7 C -0.020 4.020 8 C 0.140 3.860 9 N -0.552 5.552 10 C 0.045 3.955 11 C 0.210 3.790 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.265 1.265 20 N -0.300 5.300 21 N -0.114 5.114 22 H 0.114 0.886 23 H 0.095 0.905 24 H 0.128 0.872 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.026 0.974 35 H 0.002 0.998 36 H -0.026 1.026 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.887 -18.749 -4.128 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.177 4.177 3 C -0.139 4.139 4 C -0.006 4.006 5 N -0.078 5.078 6 C -0.180 4.180 7 C -0.159 4.159 8 C 0.011 3.989 9 N -0.277 5.277 10 C -0.103 4.103 11 C 0.084 3.916 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.190 1.190 20 N -0.166 5.166 21 N -0.093 5.093 22 H 0.132 0.868 23 H 0.114 0.886 24 H 0.146 0.854 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.132 0.868 28 H 0.157 0.843 29 H 0.245 0.755 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.020 0.980 36 H -0.008 1.008 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.066 -18.993 -5.893 25.565 hybrid contribution 0.055 0.823 1.751 1.936 sum -16.011 -18.171 -4.142 24.570 Atomic orbital electron populations 1.24101 0.95916 1.02807 0.99115 1.22747 0.96049 0.97334 1.01607 1.20933 0.97685 0.97409 0.97850 1.22522 0.94892 0.80007 1.03184 1.47723 1.32898 1.18046 1.09107 1.23848 1.05771 0.91068 0.97349 1.21920 1.01451 0.99766 0.92792 1.20170 0.90622 0.92380 0.95764 1.61894 1.23754 1.09417 1.32609 1.22164 1.00960 0.94202 0.92980 1.19375 0.94359 0.86239 0.91659 1.21419 0.97563 0.97942 1.39370 0.92306 1.25879 1.03072 0.94700 0.95880 1.70067 1.38898 1.03025 1.45344 0.85456 0.79049 0.77587 0.78634 1.19832 1.20629 1.19016 1.75037 1.19624 1.07307 1.14624 1.78149 1.09731 1.06855 1.14579 0.86790 0.88636 0.85375 0.91301 0.90831 0.86847 0.84266 0.75518 0.91488 0.91761 0.91451 0.92805 0.95531 0.97956 1.00794 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 14.32 67.78 0.97 -0.54 16 2 C -0.16 -1.39 9.52 25.65 0.24 -1.15 16 3 C -0.10 -1.26 5.78 29.85 0.17 -1.08 16 4 C 0.11 1.36 6.44 86.38 0.56 1.91 16 5 N -0.28 -6.54 3.44 -347.73 -1.20 -7.73 16 6 C -0.03 -0.67 10.52 83.49 0.88 0.20 16 7 C -0.02 -0.68 5.97 41.60 0.25 -0.43 16 8 C 0.14 5.31 5.53 85.56 0.47 5.78 16 9 N -0.55 -25.05 4.74 -931.68 -4.42 -29.47 16 10 C 0.05 1.73 9.14 127.69 1.17 2.90 16 11 C 0.21 11.45 4.72 85.56 0.40 11.86 16 12 C -0.52 -30.60 8.46 25.60 0.22 -30.38 16 13 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 16 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 17 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 N -0.30 -11.66 12.41 -48.59 -0.60 -12.26 16 21 N -0.11 -3.71 12.92 37.02 0.48 -3.23 16 22 H 0.11 0.66 8.06 -2.91 -0.02 0.63 16 23 H 0.10 0.82 7.84 -2.91 -0.02 0.80 16 24 H 0.13 0.78 8.06 -2.91 -0.02 0.76 16 25 H 0.07 0.95 7.79 -2.39 -0.02 0.93 16 26 H 0.07 1.21 8.12 -2.38 -0.02 1.19 16 27 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.14 0.75 8.07 -2.38 -0.02 0.73 16 29 H 0.23 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 31 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 32 H 0.07 2.20 6.56 -2.39 -0.02 2.18 16 33 H 0.05 2.27 6.76 -2.39 -0.02 2.25 16 34 H 0.03 0.92 8.14 -2.38 -0.02 0.91 16 35 H 0.00 0.14 7.93 -2.39 -0.02 0.12 16 36 H -0.03 -1.46 8.12 -2.38 -0.02 -1.48 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.69 316.64 3.40 -71.29 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: 1.03 Total: 0.99 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.79 Total: -10.31 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -5.46 Total: -109.22 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.69 3.40 -71.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593960776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.250 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds