Wall clock time and date at job start Mon Mar 30 2020 03:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50700 * 119.99922 * 2 1 4 4 N 1.46902 * 109.47403 * 124.12896 * 3 2 1 5 5 C 1.46899 * 110.99544 * 299.16482 * 4 3 2 6 6 C 1.50705 * 109.47304 * 288.12092 * 5 4 3 7 7 H 1.07998 * 120.00098 * 354.72831 * 6 5 4 8 8 C 1.37880 * 119.99888 * 174.71652 * 6 5 4 9 9 N 1.31507 * 120.00224 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99714 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47125 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47163 * 120.00090 * 10 8 6 13 13 H 1.48499 * 109.47331 * 240.00258 * 10 8 6 14 14 C 1.46898 * 111.00118 * 63.11690 * 4 3 2 15 15 C 1.53002 * 109.46728 * 66.05061 * 14 4 3 16 16 C 1.50710 * 109.46683 * 180.02562 * 15 14 4 17 17 C 1.35349 * 126.74753 * 125.04542 * 16 15 14 18 18 N 1.35312 * 106.16933 * 179.97438 * 17 16 15 19 19 C 1.46502 * 125.86726 * 179.97438 * 18 17 16 20 20 N 1.28713 * 108.26506 * 359.97438 * 18 17 16 21 21 N 1.28632 * 110.17998 * 0.02562 * 20 18 17 22 22 H 1.07999 * 119.99622 * 180.02562 * 1 2 3 23 23 H 1.07998 * 120.00340 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.00596 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47230 * 4.12445 * 3 2 1 26 26 H 1.09000 * 109.47434 * 244.12682 * 3 2 1 27 27 H 1.08999 * 109.47628 * 48.12489 * 5 4 3 28 28 H 1.09000 * 109.47139 * 168.12634 * 5 4 3 29 29 H 0.97005 * 120.00459 * 180.02562 * 9 8 6 30 30 H 1.08996 * 109.46986 * 306.04736 * 14 4 3 31 31 H 1.09003 * 109.47024 * 186.04701 * 14 4 3 32 32 H 1.08989 * 109.47280 * 60.00044 * 15 14 4 33 33 H 1.09003 * 109.47074 * 299.99610 * 15 14 4 34 34 H 1.08000 * 126.91793 * 359.94713 * 17 16 15 35 35 H 1.08996 * 109.46897 * 270.01634 * 19 18 17 36 36 H 1.09002 * 109.46923 * 30.01543 * 19 18 17 37 37 H 1.08998 * 109.47362 * 150.01264 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9813 1.3407 1.1465 5 6 2.2448 1.2409 2.4136 6 6 1.5052 2.5292 2.6676 7 1 1.6421 3.3704 2.0042 8 6 0.6536 2.6340 3.7469 9 7 0.4871 1.6099 4.5550 10 14 -0.2636 4.2306 4.0613 11 1 0.0945 5.2215 3.0149 12 1 -1.7263 3.9771 4.0225 13 1 0.1114 4.7623 5.3962 14 6 3.9952 0.2829 1.0422 15 6 4.9016 0.5620 -0.1585 16 6 5.9415 -0.5236 -0.2658 17 6 6.1951 -1.2980 -1.3465 18 7 7.2033 -2.1263 -0.9883 19 6 7.8177 -3.1486 -1.8390 20 7 7.5299 -1.8616 0.2282 21 7 6.7959 -0.9106 0.6879 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3574 2.1323 0.0739 26 1 2.6335 1.3956 -0.9246 27 1 1.5321 0.4182 2.3559 28 1 2.9459 1.0579 3.2279 29 1 -0.1123 1.6834 5.3141 30 1 3.5029 -0.6804 0.9097 31 1 4.5942 0.2627 1.9527 32 1 5.3939 1.5253 -0.0259 33 1 4.3026 0.5822 -1.0690 34 1 5.6934 -1.2623 -2.3023 35 1 7.2849 -4.0915 -1.7164 36 1 7.7643 -2.8340 -2.8813 37 1 8.8610 -3.2808 -1.5525 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599429702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:33 Heat of formation + Delta-G solvation = 99.674478 kcal Electronic energy + Delta-G solvation = -17940.579183 eV Core-core repulsion = 15141.058224 eV Total energy + Delta-G solvation = -2799.520959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.16835 -39.21039 -35.89647 -34.84867 -34.27894 -33.02472 -30.45345 -28.84745 -28.29432 -26.74228 -24.49313 -22.96928 -22.51866 -21.80221 -20.06142 -18.33350 -18.02243 -17.50991 -16.97707 -16.49104 -16.16875 -15.76093 -15.43959 -14.74835 -14.51822 -14.28807 -14.08505 -13.84457 -13.53507 -13.33604 -12.96711 -12.67843 -12.53209 -12.44448 -12.24326 -12.10760 -12.05786 -11.95846 -11.49438 -11.17393 -10.93936 -10.57080 -10.13111 -10.06967 -8.91554 -8.13885 -6.23511 0.68914 1.42220 1.43573 1.49051 1.54086 1.57084 1.64459 2.44012 3.18423 3.31072 3.55567 3.83598 4.12006 4.14210 4.18342 4.28566 4.36525 4.43586 4.49351 4.62753 4.65224 4.70755 4.86401 5.02055 5.11073 5.15706 5.22570 5.26261 5.32014 5.44657 5.71042 5.75430 5.78070 5.95093 6.15219 6.44893 6.68755 6.93833 7.45706 7.55908 8.96905 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.034915 B = 0.004441 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.749247 B = 6302.851879 C = 6684.193393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.088 3.912 4 N -0.535 5.535 5 C 0.206 3.794 6 C -0.513 4.513 7 H 0.063 0.937 8 C 0.001 3.999 9 N -0.937 5.937 10 Si 0.966 3.034 11 H -0.261 1.261 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.068 3.932 15 C -0.015 4.015 16 C -0.036 4.036 17 C -0.029 4.029 18 N -0.289 5.289 19 C 0.070 3.930 20 N -0.128 5.128 21 N -0.313 5.313 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.103 0.897 27 H -0.019 1.019 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.022 0.978 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.239 0.761 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.550 -8.532 -19.431 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.207 4.207 3 C -0.040 4.040 4 N -0.258 5.258 5 C 0.080 3.920 6 C -0.551 4.551 7 H 0.081 0.919 8 C -0.197 4.197 9 N -0.578 5.578 10 Si 0.791 3.209 11 H -0.185 1.185 12 H -0.204 1.204 13 H -0.208 1.208 14 C -0.061 4.061 15 C -0.054 4.054 16 C -0.175 4.175 17 C -0.181 4.181 18 N -0.084 5.084 19 C -0.069 4.069 20 N -0.107 5.107 21 N -0.179 5.179 22 H 0.120 0.880 23 H 0.108 0.892 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.121 0.879 27 H -0.001 1.001 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.255 0.745 35 H 0.123 0.877 36 H 0.153 0.847 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.720 -8.527 -18.120 22.714 hybrid contribution -1.553 -0.183 0.192 1.575 sum 9.167 -8.710 -17.928 21.939 Atomic orbital electron populations 1.23849 0.96203 1.01668 1.00394 1.23587 0.96875 0.99896 1.00326 1.21354 0.94561 0.94051 0.93990 1.62297 1.15012 1.45328 1.03124 1.19377 0.90940 0.95711 0.85982 1.21467 1.24093 0.98926 1.10613 0.91870 1.25887 0.97906 1.00067 0.95826 1.70111 1.38725 1.32444 1.16493 0.85384 0.77999 0.79421 0.78122 1.18460 1.20435 1.20820 1.21881 0.93356 0.92472 0.98343 1.19795 0.92246 0.94391 0.98990 1.22296 1.00926 1.02701 0.91608 1.24010 0.95572 0.94905 1.03592 1.47704 1.24127 1.26211 1.10316 1.22742 1.00585 0.88976 0.94583 1.78205 1.22424 1.14419 0.95630 1.75033 1.06771 1.08394 1.27745 0.88030 0.89181 0.87752 0.91772 0.87912 1.00125 0.99725 0.92954 0.95981 0.94051 0.90208 0.87187 0.74518 0.87658 0.84730 0.87675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.33 14.32 67.79 0.97 -5.36 16 2 C -0.19 -6.57 7.45 25.65 0.19 -6.38 16 3 C 0.09 3.20 5.46 85.56 0.47 3.67 16 4 N -0.54 -23.38 4.66 -905.36 -4.22 -27.60 16 5 C 0.21 11.39 4.59 85.56 0.39 11.78 16 6 C -0.51 -29.66 8.51 25.60 0.22 -29.44 16 7 H 0.06 3.58 7.67 -2.91 -0.02 3.55 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 10 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 11 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 C 0.07 2.62 4.76 86.30 0.41 3.03 16 15 C -0.01 -0.43 5.72 29.85 0.17 -0.26 16 16 C -0.04 -1.00 6.50 41.60 0.27 -0.73 16 17 C -0.03 -0.54 11.54 83.49 0.96 0.42 16 18 N -0.29 -5.63 3.74 -369.24 -1.38 -7.01 16 19 C 0.07 0.44 11.39 127.77 1.46 1.90 16 20 N -0.13 -3.85 13.16 37.02 0.49 -3.36 16 21 N -0.31 -11.06 12.40 -48.60 -0.60 -11.66 16 22 H 0.10 3.09 8.06 -2.91 -0.02 3.07 16 23 H 0.09 3.22 7.84 -2.91 -0.02 3.20 16 24 H 0.10 3.46 6.76 -2.91 -0.02 3.44 16 25 H 0.06 2.59 7.02 -2.39 -0.02 2.58 16 26 H 0.10 2.89 6.33 -2.39 -0.02 2.88 16 27 H -0.02 -1.12 6.75 -2.39 -0.02 -1.14 16 28 H -0.02 -0.95 7.81 -2.39 -0.02 -0.97 16 29 H 0.26 15.26 8.31 -92.70 -0.77 14.48 16 30 H 0.02 0.85 6.29 -2.39 -0.02 0.83 16 31 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.11 2.37 6.47 -2.39 -0.02 2.36 16 34 H 0.24 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -78.79 311.61 3.62 -75.17 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.04 Total: 5.83 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 5.97 Total: -20.87 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -5.43 Total: -107.43 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -78.79 3.62 -75.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599429702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.844 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds