Wall clock time and date at job start Mon Mar 30 2020 04:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47283 * 62.91254 * 3 2 1 5 5 C 1.53001 * 109.47401 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47077 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47077 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47384 * 180.02562 * 7 6 5 9 9 C 1.46903 * 111.00133 * 169.99963 * 8 7 6 10 10 C 1.53230 * 109.33899 * 187.25239 * 9 8 7 11 11 N 1.47080 * 108.52531 * 306.16795 * 10 9 8 12 12 C 1.36931 * 120.88364 * 231.18821 * 11 10 9 13 13 H 1.07994 * 120.00368 * 26.84029 * 12 11 10 14 14 C 1.38812 * 119.99721 * 206.56279 * 12 11 10 15 15 N 1.31619 * 120.00606 * 17.47328 * 14 12 11 16 16 Si 1.86807 * 119.99780 * 197.47555 * 14 12 11 17 17 H 1.48504 * 109.46947 * 94.38387 * 16 14 12 18 18 H 1.48508 * 109.46899 * 214.38152 * 16 14 12 19 19 H 1.48495 * 109.47303 * 334.38014 * 16 14 12 20 20 C 1.47082 * 118.23403 * 51.45931 * 11 10 9 21 21 C 1.46904 * 110.99940 * 294.30302 * 8 7 6 22 22 H 4.44653 * 5.63429 * 179.97438 * 4 1 2 23 23 H 1.09002 * 109.47237 * 302.91159 * 3 2 1 24 24 H 1.09006 * 109.46974 * 182.90642 * 3 2 1 25 25 H 1.09000 * 109.47532 * 59.99591 * 4 3 2 26 26 H 1.09005 * 109.46944 * 300.00036 * 4 3 2 27 27 H 1.09000 * 109.46958 * 59.99428 * 5 4 3 28 28 H 1.08999 * 109.46839 * 300.00154 * 5 4 3 29 29 H 1.09000 * 109.47581 * 59.99948 * 6 5 4 30 30 H 1.09000 * 109.47197 * 299.99444 * 6 5 4 31 31 H 1.09000 * 109.46958 * 59.99566 * 7 6 5 32 32 H 1.09005 * 109.47254 * 300.00172 * 7 6 5 33 33 H 1.09001 * 109.49186 * 67.29185 * 9 8 7 34 34 H 1.09000 * 109.51153 * 307.22921 * 9 8 7 35 35 H 1.09004 * 109.63143 * 186.45915 * 10 9 8 36 36 H 1.09004 * 109.63158 * 65.88032 * 10 9 8 37 37 H 0.96993 * 120.00972 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.63087 * 68.24805 * 20 11 10 39 39 H 1.08996 * 109.63194 * 188.83501 * 20 11 10 40 40 H 1.09005 * 109.48966 * 292.70358 * 21 8 7 41 41 H 1.08995 * 109.49430 * 52.78410 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1563 -0.6559 -1.2843 5 6 4.6863 -0.6547 -1.2846 6 6 5.1965 -1.3119 -2.5685 7 6 6.7265 -1.3112 -2.5686 8 7 7.2165 -1.9416 -3.8016 9 6 8.6653 -1.7500 -3.9511 10 6 9.1052 -2.2597 -5.3276 11 7 8.6423 -3.6472 -5.4819 12 6 9.5065 -4.6380 -5.8649 13 1 10.5607 -4.5484 -5.6485 14 6 9.0265 -5.7601 -6.5261 15 7 7.8366 -5.7343 -7.0880 16 14 10.0696 -7.3071 -6.6185 17 1 9.6973 -8.2221 -5.5096 18 1 9.8358 -7.9848 -7.9191 19 1 11.5047 -6.9443 -6.5003 20 6 7.2252 -3.9412 -5.2198 21 6 6.8605 -3.3663 -3.8419 22 1 -1.0500 -0.0003 -0.0001 23 1 3.0096 -0.5576 0.8627 24 1 3.0088 1.0272 0.0521 25 1 2.7927 -0.0978 -2.1470 26 1 2.7934 -1.6825 -1.3365 27 1 5.0502 -1.2126 -0.4218 28 1 5.0487 0.3719 -1.2326 29 1 4.8326 -0.7544 -3.4316 30 1 4.8341 -2.3386 -2.6200 31 1 7.0901 -1.8690 -1.7056 32 1 7.0895 -0.2847 -2.5168 33 1 9.1880 -2.3063 -3.1731 34 1 8.9033 -0.6900 -3.8626 35 1 10.1923 -2.2262 -5.4002 36 1 8.6641 -1.6378 -6.1066 37 1 7.5013 -6.5183 -7.5504 38 1 6.6068 -3.4777 -5.9885 39 1 7.0687 -5.0198 -5.2210 40 1 7.4084 -3.9002 -3.0653 41 1 5.7893 -3.4784 -3.6743 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686708732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:02 Heat of formation + Delta-G solvation = 61.882295 kcal Electronic energy + Delta-G solvation = -17973.150727 eV Core-core repulsion = 15275.531319 eV Total energy + Delta-G solvation = -2697.619408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.25935 -36.51840 -34.71352 -33.19445 -31.43358 -29.94862 -29.84123 -27.04801 -25.05151 -23.04257 -22.54217 -21.45352 -20.64651 -19.04130 -18.22671 -16.73912 -15.97310 -15.22425 -14.67894 -14.55409 -14.24734 -14.15695 -13.78233 -13.42081 -13.23487 -13.03156 -12.84231 -12.12304 -11.96280 -11.63394 -11.20214 -11.16592 -11.09682 -10.92866 -10.73402 -10.57308 -10.35482 -10.29586 -10.26427 -10.18004 -9.97985 -9.68520 -9.50260 -8.47332 -7.73751 -6.63185 -5.74928 -3.15860 2.60467 2.63263 3.39419 3.46283 3.47866 4.11762 4.41755 4.53221 4.80790 4.93694 5.00753 5.18955 5.35736 5.41559 5.47767 5.51616 5.58420 5.65619 5.76975 5.85613 5.89012 5.95004 5.98624 6.03803 6.08976 6.21006 6.29560 6.32076 6.42744 6.45007 6.62109 6.74961 6.97872 7.30467 7.41021 7.68521 7.71689 7.76932 7.87130 8.46841 9.24548 9.88213 10.47120 11.33754 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.036923 B = 0.003512 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.159272 B = 7971.521464 C = 8457.553558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.183 4.183 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.116 4.116 7 C 0.055 3.945 8 N -0.535 5.535 9 C 0.045 3.955 10 C 0.148 3.852 11 N -0.596 5.596 12 C -0.250 4.250 13 H 0.066 0.934 14 C 0.000 4.000 15 N -0.903 5.903 16 Si 0.902 3.098 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.279 1.279 20 C 0.178 3.822 21 C 0.033 3.967 22 H 0.215 0.785 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.026 0.974 39 H 0.087 0.913 40 H 0.023 0.977 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.480 10.682 12.895 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.154 4.154 7 C -0.073 4.073 8 N -0.259 5.259 9 C -0.085 4.085 10 C 0.022 3.978 11 N -0.320 5.320 12 C -0.380 4.380 13 H 0.084 0.916 14 C -0.198 4.198 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.204 1.204 20 C 0.052 3.948 21 C -0.096 4.096 22 H 0.232 0.768 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.041 0.959 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.743 10.765 12.379 18.589 hybrid contribution 0.612 -1.224 0.646 1.513 sum -8.131 9.541 13.026 18.078 Atomic orbital electron populations 1.24903 0.96006 1.01473 1.01184 1.23271 0.94730 1.00104 1.00196 1.18817 0.84487 1.02282 0.99604 1.21552 0.95798 1.01289 0.96521 1.21564 0.94350 1.01124 0.98478 1.21595 0.95193 1.01323 0.97305 1.22088 0.95081 0.98851 0.91303 1.61962 1.14132 1.15190 1.34654 1.22597 0.87257 0.98911 0.99693 1.20980 0.97019 0.87174 0.92668 1.44156 1.06507 1.02353 1.78951 1.19219 0.90834 0.97527 1.30423 0.91648 1.25022 0.97358 0.99954 0.97515 1.70034 1.18897 1.28792 1.37098 0.86272 0.79851 0.83637 0.77009 1.21565 1.21763 1.20445 1.20957 0.84288 1.00061 0.89483 1.23013 0.98822 0.86622 1.01127 0.76773 0.89637 0.89614 0.91452 0.91515 0.92038 0.91864 0.91156 0.91754 0.95830 0.91680 0.95619 0.92170 0.92703 0.95708 0.93658 0.95606 0.89457 0.95908 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.18 -1.84 13.34 -37.12 -0.50 -2.34 16 3 C -0.02 -0.13 5.70 -29.52 -0.17 -0.30 16 4 C -0.11 -1.04 5.17 -26.73 -0.14 -1.18 16 5 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 6 C -0.12 -1.45 5.15 -26.73 -0.14 -1.58 16 7 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 8 N -0.53 -9.80 4.63 -234.02 -1.08 -10.88 16 9 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 10 C 0.15 3.25 6.69 -3.61 -0.02 3.23 16 11 N -0.60 -15.53 3.03 -171.74 -0.52 -16.05 16 12 C -0.25 -7.03 9.63 -15.06 -0.15 -7.18 16 13 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 14 C 0.00 -0.01 4.93 -17.43 -0.09 -0.09 16 15 N -0.90 -26.65 11.16 55.49 0.62 -26.03 16 16 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.18 4.42 5.45 -3.36 -0.02 4.40 16 21 C 0.03 0.67 5.48 -3.46 -0.02 0.65 16 22 H 0.22 1.23 7.80 -54.09 -0.42 0.81 16 23 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.06 0.86 7.97 -51.93 -0.41 0.44 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 35 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 2.38 6.11 -51.93 -0.32 2.07 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.73 330.58 -9.13 -39.86 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.25 Total: -3.34 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.84 Total: -5.47 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.98 Total: -52.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.73 -9.13 -39.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686708732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.743 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds