Wall clock time and date at job start Mon Mar 30 2020 03:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50703 * 119.99553 * 2 1 4 4 C 1.53003 * 109.47609 * 295.00140 * 3 2 1 5 5 C 1.52998 * 109.47167 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.46863 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99864 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99874 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99884 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46945 * 90.00216 * 10 8 6 12 12 H 1.48504 * 109.46941 * 209.99803 * 10 8 6 13 13 H 1.48497 * 109.47573 * 330.00098 * 10 8 6 14 14 N 1.29509 * 120.00362 * 180.02562 * 2 1 3 15 15 N 1.40098 * 119.99962 * 359.97438 * 14 2 1 16 16 C 1.32120 * 120.00127 * 180.02562 * 15 14 2 17 17 C 1.41739 * 126.44609 * 0.02562 * 16 15 14 18 18 C 1.34556 * 108.30266 * 180.02562 * 17 16 15 19 19 N 1.36983 * 109.12765 * 359.72139 * 18 17 16 20 20 H 0.96998 * 125.83194 * 180.27361 * 19 18 17 21 21 N 1.38266 * 126.44495 * 179.97438 * 16 15 14 22 22 C 1.46499 * 126.43793 * 0.02562 * 21 16 15 23 23 H 1.08998 * 109.47199 * 269.99647 * 1 2 3 24 24 H 1.09004 * 109.47375 * 29.99907 * 1 2 3 25 25 H 1.09007 * 109.46675 * 149.99507 * 1 2 3 26 26 H 1.09007 * 109.47112 * 55.00531 * 3 2 1 27 27 H 1.09000 * 109.46769 * 175.00153 * 3 2 1 28 28 H 1.09000 * 109.46869 * 300.00132 * 4 3 2 29 29 H 1.08998 * 109.46644 * 59.99529 * 4 3 2 30 30 H 1.08993 * 109.47286 * 300.00224 * 5 4 3 31 31 H 1.09000 * 109.46994 * 60.00145 * 5 4 3 32 32 H 0.97002 * 119.99505 * 180.02562 * 9 8 6 33 33 H 1.08006 * 125.84738 * 359.97438 * 17 16 15 34 34 H 1.07998 * 125.44040 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47391 * 89.99399 * 22 21 16 36 36 H 1.09001 * 109.46813 * 329.99456 * 22 21 16 37 37 H 1.09004 * 109.47041 * 209.99583 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 1.9874 2.0518 -1.3073 5 6 2.7529 3.3765 -1.3075 6 6 2.4845 4.1115 -2.5954 7 1 1.8328 3.6774 -3.3392 8 6 3.0709 5.3383 -2.8242 9 7 3.8649 5.8666 -1.9186 10 14 2.7388 6.2490 -4.4209 11 1 1.5521 7.1258 -4.2530 12 1 3.9201 7.0770 -4.7734 13 1 2.4802 5.2684 -5.5056 14 7 2.1546 -1.1215 -0.0005 15 7 1.4542 -2.3349 -0.0005 16 6 2.1148 -3.4790 -0.0005 17 6 3.5233 -3.6381 0.0000 18 6 3.7998 -4.9550 -0.0008 19 7 2.6254 -5.6602 0.0046 20 1 2.5435 -6.6267 0.0090 21 7 1.5623 -4.7465 0.0000 22 6 0.1342 -5.0732 0.0001 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5140 26 1 1.9316 1.9145 0.8419 27 1 3.3287 1.1080 0.0895 28 1 2.3163 1.4424 -2.1491 29 1 0.9192 2.2488 -1.3968 30 1 2.4245 3.9860 -0.4657 31 1 3.8211 3.1789 -1.2182 32 1 4.2772 6.7298 -2.0794 33 1 4.2500 -2.8392 0.0001 34 1 4.7896 -5.3870 -0.0002 35 1 -0.2200 -5.1545 -1.0275 36 1 -0.4184 -4.2864 0.5137 37 1 -0.0215 -6.0216 0.5143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841634642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:31 Heat of formation + Delta-G solvation = 97.407868 kcal Electronic energy + Delta-G solvation = -17185.796257 eV Core-core repulsion = 14386.177010 eV Total energy + Delta-G solvation = -2799.619247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 250.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79895 -38.16400 -36.05954 -34.72351 -34.08269 -33.04881 -30.50952 -28.74181 -28.49958 -27.42748 -25.37867 -22.46453 -22.22938 -21.24648 -19.65369 -18.69491 -18.12701 -16.64182 -16.50373 -16.45807 -15.99309 -15.58205 -15.17922 -14.83289 -14.72862 -14.25986 -14.11521 -13.77643 -13.58014 -13.22824 -13.19443 -12.84734 -12.74903 -12.54250 -12.39779 -12.30446 -12.07413 -11.36674 -11.28137 -11.15442 -10.58779 -10.49504 -10.13053 -9.21195 -8.15156 -7.88336 -6.25451 0.41088 0.67226 1.42031 1.44157 1.44407 1.55581 2.45037 2.60744 2.76818 3.17752 3.36214 4.00587 4.06520 4.21568 4.38852 4.41927 4.50833 4.57737 4.67779 4.77046 4.81223 4.85227 4.86965 5.05805 5.10894 5.16411 5.27669 5.30114 5.48873 5.59348 5.79167 5.83725 5.93131 6.20071 6.32152 6.67944 6.91081 6.93978 7.42897 7.73508 8.97185 Molecular weight = 250.15amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.003297 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.353201 B = 8490.664408 C = 8686.017432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.131 3.869 3 C -0.054 4.054 4 C -0.084 4.084 5 C 0.025 3.975 6 C -0.543 4.543 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.266 1.266 14 N -0.369 5.369 15 N -0.532 5.532 16 C 0.415 3.585 17 C -0.357 4.357 18 C 0.190 3.810 19 N -0.482 5.482 20 H 0.464 0.536 21 N -0.415 5.415 22 C 0.117 3.883 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.000 1.000 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.138 0.862 34 H 0.245 0.755 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 -28.775 5.320 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 C -0.094 4.094 4 C -0.123 4.123 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.190 1.190 14 N -0.177 5.177 15 N -0.368 5.368 16 C 0.153 3.847 17 C -0.391 4.391 18 C 0.053 3.947 19 N -0.203 5.203 20 H 0.314 0.686 21 N -0.219 5.219 22 C -0.023 4.023 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.019 0.981 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.155 0.845 34 H 0.261 0.739 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.465 -29.134 5.361 29.958 hybrid contribution -0.014 0.569 -0.653 0.866 sum -4.479 -28.566 4.708 29.296 Atomic orbital electron populations 1.21108 0.92579 1.02578 1.02562 1.24996 0.94502 0.92255 0.94241 1.20413 0.99194 0.90722 0.99056 1.21335 1.00175 0.95637 0.95160 1.19011 0.94294 0.92274 0.95629 1.21717 1.28395 1.04077 1.03930 0.92421 1.25987 0.94815 0.98524 1.00577 1.70106 1.32296 1.18465 1.36502 0.85443 0.77875 0.78415 0.79279 1.19534 1.20644 1.19011 1.72993 1.34303 0.96380 1.14034 1.74067 1.28665 0.93352 1.40676 1.19456 0.90320 0.85907 0.89033 1.21494 0.94630 0.98306 1.24649 1.23157 0.91173 0.90745 0.89675 1.44236 0.96917 1.05200 1.73946 0.68574 1.46426 1.01479 0.98439 1.75605 1.21987 0.72956 1.03817 1.03521 0.90590 0.90954 0.91834 0.89429 0.92066 0.94480 0.92066 0.98143 0.99117 0.92777 0.84452 0.73930 0.91249 0.90133 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.69 71.24 0.69 -3.64 16 2 C 0.13 5.12 6.59 46.32 0.31 5.43 16 3 C -0.05 -2.19 5.60 29.85 0.17 -2.03 16 4 C -0.08 -3.88 5.03 30.59 0.15 -3.72 16 5 C 0.03 1.41 4.97 29.85 0.15 1.56 16 6 C -0.54 -32.63 9.11 25.60 0.23 -32.39 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 9 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 10 Si 0.97 45.99 29.54 68.60 2.03 48.02 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 N -0.37 -15.32 10.91 -40.57 -0.44 -15.76 16 15 N -0.53 -19.93 10.14 -54.30 -0.55 -20.48 16 16 C 0.41 12.46 7.88 134.05 1.06 13.52 16 17 C -0.36 -8.95 10.27 22.29 0.23 -8.72 16 18 C 0.19 2.16 11.93 83.04 0.99 3.15 16 19 N -0.48 -4.61 7.31 -56.81 -0.42 -5.02 16 20 H 0.46 -0.01 8.96 -213.27 -1.91 -1.92 16 21 N -0.41 -7.90 4.13 -365.03 -1.51 -9.41 16 22 C 0.12 1.47 11.47 127.77 1.47 2.93 16 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.07 2.30 6.91 -2.38 -0.02 2.29 16 25 H 0.06 2.19 7.28 -2.38 -0.02 2.17 16 26 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 27 H 0.06 2.58 8.11 -2.39 -0.02 2.56 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.66 7.01 -2.39 -0.02 2.64 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.14 4.01 8.05 -2.91 -0.02 3.99 16 34 H 0.24 -0.08 8.06 -2.91 -0.02 -0.10 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 Total: -1.00 -85.63 320.21 4.44 -81.19 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -0.86 Total: 3.51 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 5.90 Total: -23.55 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -2.63 Total: -109.17 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -85.63 4.44 -81.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841634642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.596 kcal (2) G-P(sol) polarization free energy of solvation -85.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds