Wall clock time and date at job start Mon Mar 30 2020 04:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99842 * 2 1 4 4 H 1.48494 * 109.47037 * 89.99734 * 3 2 1 5 5 H 1.48497 * 109.46796 * 209.99843 * 3 2 1 6 6 H 1.48500 * 109.47097 * 330.00033 * 3 2 1 7 7 C 1.37872 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99811 * 187.19618 * 7 2 1 9 9 C 1.50696 * 119.99693 * 7.20103 * 7 2 1 10 10 C 1.53002 * 115.55158 * 275.21177 * 9 7 2 11 11 N 1.46904 * 109.46767 * 301.14916 * 10 9 7 12 12 C 1.46904 * 110.99787 * 184.38190 * 11 10 9 13 13 H 1.09008 * 110.32254 * 325.69452 * 12 11 10 14 14 C 1.54764 * 110.36865 * 87.93423 * 12 11 10 15 15 C 1.55182 * 102.86473 * 140.68528 * 14 12 11 16 16 N 1.48693 * 103.40735 * 323.07986 * 15 14 12 17 17 C 1.47216 * 105.63453 * 38.47272 * 16 15 14 18 18 C 1.53113 * 115.15360 * 105.18555 * 17 16 15 19 19 C 1.53895 * 86.88143 * 91.82122 * 18 17 16 20 20 C 1.53096 * 115.18681 * 205.16546 * 17 16 15 21 21 C 1.53002 * 117.49749 * 129.54493 * 9 7 2 22 22 C 1.53002 * 117.49960 * 60.88612 * 9 7 2 23 23 H 0.96998 * 119.99836 * 175.40582 * 1 2 3 24 24 H 1.08997 * 109.46810 * 61.14670 * 10 9 7 25 25 H 1.09001 * 109.47177 * 181.14858 * 10 9 7 26 26 H 1.00901 * 110.99811 * 308.32739 * 11 10 9 27 27 H 1.09001 * 110.71653 * 259.11416 * 14 12 11 28 28 H 1.08995 * 110.72039 * 22.38421 * 14 12 11 29 29 H 1.09002 * 110.66587 * 204.56479 * 15 14 12 30 30 H 1.09005 * 110.70273 * 81.60649 * 15 14 12 31 31 H 1.00900 * 110.99830 * 158.87772 * 16 15 14 32 32 H 1.09000 * 113.65227 * 206.32209 * 18 17 16 33 33 H 1.09008 * 113.64449 * 337.32681 * 18 17 16 34 34 H 1.09001 * 113.59865 * 270.35482 * 19 18 17 35 35 H 1.09002 * 113.67084 * 139.52154 * 19 18 17 36 36 H 1.09001 * 113.64511 * 22.70019 * 20 17 16 37 37 H 1.09000 * 113.64532 * 153.70962 * 20 17 16 38 38 H 1.09003 * 117.50177 * 359.97438 * 21 9 7 39 39 H 1.09004 * 117.50094 * 145.01705 * 21 9 7 40 40 H 1.09008 * 117.49289 * 214.97951 * 22 9 7 41 41 H 1.08992 * 117.50207 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6528 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0782 -1.1975 0.1177 9 6 1.2600 -2.4940 -0.1625 10 6 0.6766 -3.0859 1.1221 11 7 1.7582 -3.3220 2.0877 12 6 1.2501 -3.9866 3.2953 13 1 0.2391 -3.6453 3.5182 14 6 1.2722 -5.5234 3.1141 15 6 1.7278 -6.0292 4.5086 16 7 2.7189 -5.0077 4.9390 17 6 2.1794 -3.7154 4.4849 18 6 1.5822 -2.8361 5.5869 19 6 2.9767 -2.1983 5.7173 20 6 3.2222 -2.6179 4.2570 21 6 1.7700 -3.4719 -1.2229 22 6 0.4701 -2.6982 -1.4568 23 1 -0.4850 -0.8373 -0.0673 24 1 -0.0451 -2.3889 1.5481 25 1 0.1801 -4.0293 0.8947 26 1 2.5063 -3.8545 1.6696 27 1 0.2773 -5.8975 2.8724 28 1 1.9905 -5.8109 2.3464 29 1 2.1968 -7.0098 4.4278 30 1 0.8859 -6.0631 5.2002 31 1 2.8371 -5.0182 5.9410 32 1 0.8176 -2.1463 5.2297 33 1 1.2720 -3.3934 6.4709 34 1 3.6239 -2.7066 6.4321 35 1 2.9521 -1.1183 5.8626 36 1 4.2266 -3.0002 4.0751 37 1 2.9149 -1.8673 3.5289 38 1 2.6438 -3.1749 -1.8029 39 1 1.6895 -4.5371 -1.0055 40 1 -0.4652 -3.2545 -1.3931 41 1 0.4885 -1.8921 -2.1902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925658705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:37 Heat of formation + Delta-G solvation = 46.966758 kcal Electronic energy + Delta-G solvation = -19379.270761 eV Core-core repulsion = 16681.004567 eV Total energy + Delta-G solvation = -2698.266194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10385 -37.16662 -35.28863 -33.48932 -31.73091 -28.82574 -26.91075 -25.40422 -24.86074 -23.68257 -22.03984 -21.27044 -20.48360 -19.32116 -18.30429 -16.69973 -16.14069 -15.36532 -14.82322 -14.63308 -13.77082 -13.65699 -13.51058 -13.34171 -12.95360 -12.66181 -12.26962 -12.02515 -11.91760 -11.82769 -11.46880 -11.24052 -10.76736 -10.72420 -10.68021 -10.40577 -10.34691 -10.07482 -10.04984 -9.82034 -9.41839 -8.45950 -8.41944 -8.34359 -8.19559 -7.49709 -6.21348 -3.90604 3.50614 3.53607 3.68840 4.23280 4.55335 4.62926 4.79423 4.84405 5.06163 5.08837 5.21658 5.26275 5.38007 5.46116 5.53664 5.64150 5.76065 5.83115 5.89701 6.00444 6.04089 6.12799 6.17370 6.20893 6.25010 6.36526 6.40648 6.48220 6.56168 6.59368 6.73535 6.86850 6.91642 7.13916 7.28514 7.35580 7.44562 7.92452 8.15323 8.42713 8.58096 9.02026 9.80826 11.18638 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.007607 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.847404 B = 3679.954131 C = 4587.438573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 1.067 2.933 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.029 3.971 10 C 0.104 3.896 11 N -0.647 5.647 12 C 0.093 3.907 13 H 0.076 0.924 14 C -0.155 4.155 15 C 0.042 3.958 16 N -0.647 5.647 17 C 0.083 3.917 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.102 4.102 21 C -0.201 4.201 22 C -0.182 4.182 23 H 0.272 0.728 24 H 0.065 0.935 25 H -0.005 1.005 26 H 0.338 0.662 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.037 0.963 31 H 0.332 0.668 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -9.029 9.280 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.896 3.104 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.025 4.025 11 N -0.276 5.276 12 C -0.019 4.019 13 H 0.095 0.905 14 C -0.195 4.195 15 C -0.088 4.088 16 N -0.275 5.275 17 C -0.009 4.009 18 C -0.194 4.194 19 C -0.184 4.184 20 C -0.140 4.140 21 C -0.238 4.238 22 C -0.220 4.220 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.013 0.987 26 H 0.156 0.844 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.723 -6.838 9.051 11.666 hybrid contribution -0.863 -2.610 0.279 2.763 sum 1.860 -9.448 9.330 13.408 Atomic orbital electron populations 1.70706 1.06799 1.31252 1.46208 1.25642 0.96540 1.02013 0.93739 0.83575 0.74684 0.75442 0.76670 1.21577 1.21662 1.21384 1.21104 0.94133 0.89286 1.53757 0.92973 1.19158 0.97557 0.95323 0.85177 1.21609 0.92347 0.95496 0.93077 1.60241 1.11021 1.50419 1.05886 1.22204 0.97250 0.90311 0.92154 0.90539 1.23368 1.00941 0.98140 0.97064 1.22972 0.93754 0.96072 0.95971 1.62868 1.43601 1.02824 1.18215 1.22355 0.95543 0.89068 0.93946 1.23463 0.97888 0.99923 0.98125 1.22900 0.96364 1.00400 0.98744 1.22772 0.98160 0.97454 0.95589 1.22891 0.97823 0.95301 1.07822 1.22759 0.92965 1.02199 1.04094 0.91692 0.91624 0.98731 0.84367 0.91700 0.90847 0.90572 0.94435 0.85146 0.89471 0.92647 0.91164 0.91712 0.91817 0.86846 0.90237 0.92018 0.91883 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.82 13.57 55.43 0.75 -26.07 16 2 C 0.02 0.70 5.39 -17.82 -0.10 0.60 16 3 Si 1.07 25.29 29.91 -169.99 -5.08 20.20 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.54 -14.76 8.61 -34.44 -0.30 -15.06 16 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.03 0.68 1.05 -155.66 -0.16 0.52 16 10 C 0.10 2.24 5.31 -3.82 -0.02 2.22 16 11 N -0.65 -12.41 4.48 -105.53 -0.47 -12.88 16 12 C 0.09 1.50 3.01 -66.59 -0.20 1.30 16 13 H 0.08 1.30 7.64 -51.92 -0.40 0.91 16 14 C -0.16 -2.17 6.71 -24.65 -0.17 -2.33 16 15 C 0.04 0.50 7.56 -1.68 -0.01 0.49 16 16 N -0.65 -8.45 7.34 -96.87 -0.71 -9.16 16 17 C 0.08 1.22 1.36 -131.13 -0.18 1.04 16 18 C -0.15 -2.12 7.17 -26.21 -0.19 -2.30 16 19 C -0.15 -1.99 8.02 -25.79 -0.21 -2.19 16 20 C -0.10 -1.63 6.94 -26.21 -0.18 -1.81 16 21 C -0.20 -4.33 9.94 -26.69 -0.27 -4.60 16 22 C -0.18 -4.19 8.76 -26.69 -0.23 -4.43 16 23 H 0.27 7.91 6.15 -40.82 -0.25 7.66 16 24 H 0.07 1.59 7.76 -51.93 -0.40 1.18 16 25 H -0.01 -0.11 8.08 -51.93 -0.42 -0.53 16 26 H 0.34 6.51 8.08 -39.29 -0.32 6.19 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.08 7.59 -51.93 -0.39 0.68 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.33 3.79 8.47 -39.29 -0.33 3.45 16 32 H 0.09 1.31 8.09 -51.93 -0.42 0.88 16 33 H 0.05 0.66 8.07 -51.92 -0.42 0.24 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.11 2.18 7.25 -51.93 -0.38 1.80 16 38 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 41 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -28.01 322.87 -10.02 -38.03 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -7.16 Total: 11.55 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -2.21 Total: -26.54 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.43 Total: -48.11 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.01 -10.02 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925658705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.999 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds