Wall clock time and date at job start Mon Mar 30 2020 04:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99842 * 2 1 4 4 H 1.48494 * 109.47037 * 89.99734 * 3 2 1 5 5 H 1.48497 * 109.46796 * 209.99843 * 3 2 1 6 6 H 1.48500 * 109.47097 * 330.00033 * 3 2 1 7 7 C 1.37872 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99811 * 187.19618 * 7 2 1 9 9 C 1.50696 * 119.99693 * 7.20103 * 7 2 1 10 10 C 1.53002 * 115.55158 * 275.21177 * 9 7 2 11 11 N 1.46904 * 109.46767 * 301.14916 * 10 9 7 12 12 C 1.46904 * 110.99787 * 184.38190 * 11 10 9 13 13 H 1.09008 * 110.32254 * 325.69452 * 12 11 10 14 14 C 1.54764 * 110.36865 * 87.93423 * 12 11 10 15 15 C 1.55182 * 102.86473 * 140.68528 * 14 12 11 16 16 N 1.48693 * 103.40735 * 323.07986 * 15 14 12 17 17 C 1.47216 * 105.63453 * 38.47272 * 16 15 14 18 18 C 1.53113 * 115.15360 * 105.18555 * 17 16 15 19 19 C 1.53895 * 86.88143 * 91.82122 * 18 17 16 20 20 C 1.53096 * 115.18681 * 205.16546 * 17 16 15 21 21 C 1.53002 * 117.49749 * 129.54493 * 9 7 2 22 22 C 1.53002 * 117.49960 * 60.88612 * 9 7 2 23 23 H 0.96998 * 119.99836 * 175.40582 * 1 2 3 24 24 H 1.08997 * 109.46810 * 61.14670 * 10 9 7 25 25 H 1.09001 * 109.47177 * 181.14858 * 10 9 7 26 26 H 1.00901 * 110.99811 * 308.32739 * 11 10 9 27 27 H 1.09001 * 110.71653 * 259.11416 * 14 12 11 28 28 H 1.08995 * 110.72039 * 22.38421 * 14 12 11 29 29 H 1.09002 * 110.66587 * 204.56479 * 15 14 12 30 30 H 1.09005 * 110.70273 * 81.60649 * 15 14 12 31 31 H 1.00900 * 110.99830 * 158.87772 * 16 15 14 32 32 H 1.09000 * 113.65227 * 206.32209 * 18 17 16 33 33 H 1.09008 * 113.64449 * 337.32681 * 18 17 16 34 34 H 1.09001 * 113.59865 * 270.35482 * 19 18 17 35 35 H 1.09002 * 113.67084 * 139.52154 * 19 18 17 36 36 H 1.09001 * 113.64511 * 22.70019 * 20 17 16 37 37 H 1.09000 * 113.64532 * 153.70962 * 20 17 16 38 38 H 1.09003 * 117.50177 * 359.97438 * 21 9 7 39 39 H 1.09004 * 117.50094 * 145.01705 * 21 9 7 40 40 H 1.09008 * 117.49289 * 214.97951 * 22 9 7 41 41 H 1.08992 * 117.50207 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6528 -0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0782 -1.1975 0.1177 9 6 1.2600 -2.4940 -0.1625 10 6 0.6766 -3.0859 1.1221 11 7 1.7582 -3.3220 2.0877 12 6 1.2501 -3.9866 3.2953 13 1 0.2391 -3.6453 3.5182 14 6 1.2722 -5.5234 3.1141 15 6 1.7278 -6.0292 4.5086 16 7 2.7189 -5.0077 4.9390 17 6 2.1794 -3.7154 4.4849 18 6 1.5822 -2.8361 5.5869 19 6 2.9767 -2.1983 5.7173 20 6 3.2222 -2.6179 4.2570 21 6 1.7700 -3.4719 -1.2229 22 6 0.4701 -2.6982 -1.4568 23 1 -0.4850 -0.8373 -0.0673 24 1 -0.0451 -2.3889 1.5481 25 1 0.1801 -4.0293 0.8947 26 1 2.5063 -3.8545 1.6696 27 1 0.2773 -5.8975 2.8724 28 1 1.9905 -5.8109 2.3464 29 1 2.1968 -7.0098 4.4278 30 1 0.8859 -6.0631 5.2002 31 1 2.8371 -5.0182 5.9410 32 1 0.8176 -2.1463 5.2297 33 1 1.2720 -3.3934 6.4709 34 1 3.6239 -2.7066 6.4321 35 1 2.9521 -1.1183 5.8626 36 1 4.2266 -3.0002 4.0751 37 1 2.9149 -1.8673 3.5289 38 1 2.6438 -3.1749 -1.8029 39 1 1.6895 -4.5371 -1.0055 40 1 -0.4652 -3.2545 -1.3931 41 1 0.4885 -1.8921 -2.1902 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925658705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:37 Heat of formation + Delta-G solvation = 29.577568 kcal Electronic energy + Delta-G solvation = -19380.024813 eV Core-core repulsion = 16681.004567 eV Total energy + Delta-G solvation = -2699.020246 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 250.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28938 -38.96301 -36.53268 -34.87638 -33.82384 -30.08479 -28.17502 -26.92161 -26.61120 -25.28183 -23.13552 -23.03023 -21.73139 -21.24068 -19.54811 -18.51043 -17.43703 -16.54201 -16.31996 -16.05349 -15.60488 -15.13728 -14.98206 -14.85566 -14.42164 -14.19195 -13.86664 -13.36212 -13.14393 -13.06435 -12.95273 -12.69634 -12.61061 -12.49881 -12.21932 -11.93235 -11.87344 -11.54164 -11.37652 -11.19411 -10.96168 -10.43142 -10.34258 -10.18090 -9.45022 -9.00393 -8.42156 -6.10662 1.55800 1.63648 1.80155 2.63572 3.08224 3.17350 3.34252 3.43923 3.64645 3.75802 3.92906 3.97139 4.10934 4.19951 4.26099 4.35314 4.39041 4.50032 4.53398 4.58364 4.65155 4.78385 4.82207 4.86671 4.93521 4.96249 5.00687 5.05650 5.06696 5.10167 5.26735 5.41792 5.44668 5.55355 5.59011 5.97908 6.24136 6.35539 6.42571 6.50790 6.66522 6.85360 7.66216 8.98860 Molecular weight = 250.17amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.007607 C = 0.006102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.847404 B = 3679.954131 C = 4587.438573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.022 4.022 3 Si 1.106 2.894 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.547 4.547 8 H 0.037 0.963 9 C 0.002 3.998 10 C 0.122 3.878 11 N -0.655 5.655 12 C 0.087 3.913 13 H 0.063 0.937 14 C -0.151 4.151 15 C 0.048 3.952 16 N -0.649 5.649 17 C 0.089 3.911 18 C -0.150 4.150 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.176 4.176 22 C -0.185 4.185 23 H 0.263 0.737 24 H 0.031 0.969 25 H 0.010 0.990 26 H 0.337 0.663 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.346 0.654 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -10.722 10.645 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.221 4.221 3 Si 0.931 3.069 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.214 1.214 7 C -0.585 4.585 8 H 0.056 0.944 9 C 0.001 3.999 10 C -0.007 4.007 11 N -0.285 5.285 12 C -0.025 4.025 13 H 0.081 0.919 14 C -0.191 4.191 15 C -0.081 4.081 16 N -0.279 5.279 17 C -0.003 4.003 18 C -0.190 4.190 19 C -0.172 4.172 20 C -0.148 4.148 21 C -0.213 4.213 22 C -0.224 4.224 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.028 0.972 26 H 0.156 0.844 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.071 0.929 31 H 0.164 0.836 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.473 -8.556 10.429 13.930 hybrid contribution -1.063 -2.130 -0.160 2.386 sum 2.410 -10.686 10.269 15.015 Atomic orbital electron populations 1.70805 1.07572 1.30773 1.48600 1.26784 0.96665 1.05188 0.93414 0.83054 0.74254 0.72460 0.77159 1.20718 1.20151 1.21414 1.21315 0.93621 0.90989 1.52593 0.94425 1.19236 0.98742 0.95348 0.86591 1.21231 0.92217 0.95011 0.92255 1.60154 1.10443 1.51698 1.06171 1.22272 0.96851 0.91975 0.91384 0.91882 1.23295 1.01374 0.95994 0.98413 1.23005 0.94145 0.96259 0.94713 1.62815 1.43835 1.01858 1.19361 1.22222 0.94640 0.89779 0.93673 1.23388 0.97442 0.99513 0.98628 1.22873 0.96517 1.00552 0.97254 1.22626 0.98205 0.97468 0.96497 1.22882 0.96649 0.96331 1.05434 1.22684 0.94525 1.02197 1.02955 0.92666 0.95016 0.97229 0.84422 0.90921 0.91482 0.88788 0.92892 0.83624 0.91477 0.90118 0.88754 0.92032 0.92232 0.90791 0.90554 0.89114 0.90252 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.57 21.45 0.29 -56.34 16 2 C -0.02 -1.24 5.39 84.65 0.46 -0.78 16 3 Si 1.11 51.71 29.91 68.60 2.05 53.76 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 7 C -0.55 -30.25 8.61 25.60 0.22 -30.03 16 8 H 0.04 2.14 7.82 -2.91 -0.02 2.12 16 9 C 0.00 0.07 1.05 -52.93 -0.06 0.02 16 10 C 0.12 5.35 5.31 86.30 0.46 5.80 16 11 N -0.66 -25.36 4.48 -487.79 -2.19 -27.55 16 12 C 0.09 2.75 3.01 45.64 0.14 2.89 16 13 H 0.06 2.16 7.64 -2.38 -0.02 2.14 16 14 C -0.15 -3.89 6.71 31.94 0.21 -3.68 16 15 C 0.05 0.99 7.56 86.70 0.66 1.65 16 16 N -0.65 -15.05 7.34 -460.39 -3.38 -18.43 16 17 C 0.09 2.50 1.36 3.66 0.00 2.51 16 18 C -0.15 -3.88 7.17 30.93 0.22 -3.66 16 19 C -0.13 -3.44 8.02 31.20 0.25 -3.19 16 20 C -0.11 -3.48 6.94 30.93 0.21 -3.27 16 21 C -0.18 -7.37 9.94 30.62 0.30 -7.06 16 22 C -0.19 -8.54 8.76 30.62 0.27 -8.27 16 23 H 0.26 15.82 6.15 -92.71 -0.57 15.25 16 24 H 0.03 1.58 7.76 -2.39 -0.02 1.57 16 25 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 26 H 0.34 12.94 8.08 -89.69 -0.72 12.22 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.83 7.59 -2.39 -0.02 1.81 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.35 6.57 8.47 -89.69 -0.76 5.81 16 32 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.08 1.68 8.07 -2.38 -0.02 1.66 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 2.96 7.25 -2.39 -0.02 2.94 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 41 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -61.16 322.87 -0.15 -61.32 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -0.28 Total: 34.32 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 3.35 Total: -47.08 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -5.27 Total: -102.31 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 2.05 Total: 53.76 kcal Total: -61.16 -0.15 -61.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925658705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.893 kcal (2) G-P(sol) polarization free energy of solvation -61.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds