Wall clock time and date at job start Mon Mar 30 2020 04:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97374 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47528 * 144.99801 * 7 6 5 9 9 C 1.52998 * 109.46932 * 264.99715 * 7 6 5 10 10 N 1.46902 * 109.47154 * 24.99801 * 7 6 5 11 11 C 1.46902 * 111.00150 * 155.00173 * 10 7 6 12 12 C 1.50704 * 109.46925 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99514 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00173 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99846 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46922 * 89.99652 * 16 14 12 18 18 H 1.48500 * 109.47143 * 209.99963 * 16 14 12 19 19 H 1.48494 * 109.46873 * 329.99943 * 16 14 12 20 20 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 21 21 O 1.35900 * 120.02845 * 180.02562 * 20 6 5 22 22 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 24 24 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 26 26 H 1.07992 * 119.96978 * 359.95936 * 4 3 2 27 27 H 1.07999 * 119.94483 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47065 * 60.00267 * 9 7 6 29 29 H 1.08999 * 109.46917 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47179 * 299.99868 * 9 7 6 31 31 H 1.00907 * 110.99956 * 278.95838 * 10 7 6 32 32 H 1.08994 * 109.46908 * 300.00174 * 11 10 7 33 33 H 1.09001 * 109.46815 * 60.00215 * 11 10 7 34 34 H 0.97001 * 119.99916 * 180.02562 * 15 14 12 35 35 H 0.96701 * 113.99378 * 269.97162 * 21 20 6 36 36 H 1.08004 * 120.05142 * 359.74932 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0028 8 1 4.8924 4.9706 0.5925 9 6 4.3205 5.4260 -1.4338 10 7 3.0783 6.0300 0.5884 11 6 3.8386 7.1549 1.1494 12 6 2.8846 8.1615 1.7391 13 1 1.8200 7.9836 1.7006 14 6 3.3709 9.3100 2.3269 15 7 4.6672 9.5268 2.3733 16 14 2.1885 10.5582 3.0572 17 1 1.9412 10.2297 4.4842 18 1 2.7790 11.9170 2.9572 19 1 0.9052 10.5199 2.3109 20 6 4.0567 2.5210 0.0011 21 8 5.4137 2.5960 0.0021 22 6 3.4302 1.2840 0.0005 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2121 2.3187 0.0003 27 1 1.3277 4.5114 0.0011 28 1 3.4055 5.4823 -2.0236 29 1 4.8121 6.3988 -1.4330 30 1 4.9877 4.6816 -1.8684 31 1 2.4044 6.3517 -0.0902 32 1 4.5080 6.7887 1.9277 33 1 4.4231 7.6278 0.3603 34 1 5.0094 10.3346 2.7871 35 1 5.8070 2.6181 -0.8810 36 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:33 Heat of formation + Delta-G solvation = -58.173677 kcal Electronic energy + Delta-G solvation = -18098.210935 eV Core-core repulsion = 15161.833753 eV Total energy + Delta-G solvation = -2936.377182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.29175 -38.60914 -36.46922 -35.34030 -32.80232 -30.64043 -30.00692 -28.33495 -27.18298 -25.96577 -23.22500 -22.53678 -21.41691 -20.11146 -18.70779 -16.88119 -16.60366 -16.41563 -15.77963 -15.23842 -14.82659 -14.61531 -14.25487 -13.91132 -13.47937 -13.43016 -12.80858 -12.51926 -12.29371 -12.18610 -11.85231 -11.59466 -11.36262 -11.27645 -10.80590 -10.76476 -10.63493 -10.49241 -10.30276 -9.85893 -9.18496 -8.64702 -8.48242 -7.90769 -7.30286 -6.02320 -4.04299 1.36201 1.57945 3.17908 3.32723 3.38461 3.41652 3.77772 4.42689 4.44316 4.86472 4.98671 5.03203 5.07863 5.14342 5.32687 5.33389 5.36181 5.53574 5.68043 5.72529 5.83126 6.02007 6.09569 6.30346 6.35782 6.43575 6.61165 6.74354 6.86007 7.28215 7.37631 7.44234 7.77336 7.79602 8.13769 8.38677 8.60788 9.04629 9.60479 11.08731 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.004711 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.164466 B = 5941.841983 C = 6619.278247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.041 4.041 6 C -0.114 4.114 7 C 0.123 3.877 8 H 0.088 0.912 9 C -0.171 4.171 10 N -0.682 5.682 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.140 3.860 21 O -0.491 6.491 22 C -0.183 4.183 23 H 0.054 0.946 24 H 0.096 0.904 25 H 0.056 0.944 26 H 0.126 0.874 27 H 0.137 0.863 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.328 0.672 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.387 0.613 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -16.161 -8.670 19.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.082 3.918 4 C -0.236 4.236 5 C -0.059 4.059 6 C -0.115 4.115 7 C 0.012 3.988 8 H 0.106 0.894 9 C -0.230 4.230 10 N -0.312 5.312 11 C 0.069 3.931 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.095 3.905 21 O -0.301 6.301 22 C -0.202 4.202 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.145 0.855 32 H 0.046 0.954 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.243 0.757 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.953 -16.530 -7.376 18.766 hybrid contribution -0.398 1.302 -0.786 1.572 sum -5.351 -15.228 -8.161 18.087 Atomic orbital electron populations 1.23020 0.78560 1.03564 1.01499 1.86021 1.21237 1.27168 1.89094 1.18694 0.91708 0.84059 0.97343 1.21260 0.99911 0.92303 1.10133 1.20767 0.93827 0.97075 0.94250 1.20305 0.93890 0.94864 1.02456 1.20260 0.95884 0.89035 0.93623 0.89441 1.22428 1.01280 1.01655 0.97619 1.60759 1.17205 1.16244 1.36949 1.19580 0.93279 0.86405 0.93870 1.21177 0.93575 1.03203 1.37329 0.92017 1.24981 0.95170 0.98159 0.96220 1.69963 1.11850 1.27018 1.44851 0.86491 0.80922 0.80356 0.79571 1.20631 1.21323 1.19889 1.17924 0.82769 0.90820 0.98977 1.84817 1.16033 1.96088 1.33142 1.20448 0.91794 0.98012 1.09947 0.92708 0.88539 0.92567 0.85606 0.84498 0.92886 0.91859 0.93337 0.85541 0.95372 0.99351 0.92916 0.75702 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.00 10.49 -19.42 -0.20 -4.21 16 3 C 0.13 1.75 6.68 -39.24 -0.26 1.49 16 4 C -0.22 -2.93 9.04 -39.41 -0.36 -3.29 16 5 C -0.04 -0.62 9.31 -39.63 -0.37 -0.99 16 6 C -0.11 -1.85 5.07 -104.45 -0.53 -2.38 16 7 C 0.12 2.21 2.52 -68.87 -0.17 2.04 16 8 H 0.09 1.75 7.34 -51.93 -0.38 1.37 16 9 C -0.17 -2.61 9.14 37.16 0.34 -2.27 16 10 N -0.68 -14.43 5.24 -109.22 -0.57 -15.00 16 11 C 0.20 5.10 5.24 -4.97 -0.03 5.07 16 12 C -0.51 -14.55 9.32 -34.44 -0.32 -14.87 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C 0.14 2.11 6.67 -39.24 -0.26 1.85 16 21 O -0.49 -6.75 12.63 -19.43 -0.25 -6.99 16 22 C -0.18 -2.59 9.93 -39.29 -0.39 -2.98 16 23 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.13 1.38 6.29 -52.49 -0.33 1.05 16 27 H 0.14 2.08 6.88 -52.49 -0.36 1.72 16 28 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 29 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.33 6.50 7.89 -39.29 -0.31 6.19 16 32 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 33 H -0.01 -0.31 7.44 -51.93 -0.39 -0.69 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.39 3.40 9.06 45.56 0.41 3.81 16 36 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -32.33 305.02 -6.36 -38.69 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.19 Total: 5.98 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.46 Total: -13.59 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.16 Total: -41.18 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.45 Total: -11.20 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.33 -6.36 -38.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.488 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds