Wall clock time and date at job start Mon Mar 30 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97374 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47528 * 144.99801 * 7 6 5 9 9 C 1.52998 * 109.46932 * 264.99715 * 7 6 5 10 10 N 1.46902 * 109.47154 * 24.99801 * 7 6 5 11 11 C 1.46902 * 111.00150 * 155.00173 * 10 7 6 12 12 C 1.50704 * 109.46925 * 179.97438 * 11 10 7 13 13 H 1.08000 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99514 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00173 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99846 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46922 * 89.99652 * 16 14 12 18 18 H 1.48500 * 109.47143 * 209.99963 * 16 14 12 19 19 H 1.48494 * 109.46873 * 329.99943 * 16 14 12 20 20 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 21 21 O 1.35900 * 120.02845 * 180.02562 * 20 6 5 22 22 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 23 23 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 24 24 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 26 26 H 1.07992 * 119.96978 * 359.95936 * 4 3 2 27 27 H 1.07999 * 119.94483 * 179.97438 * 5 4 3 28 28 H 1.09000 * 109.47065 * 60.00267 * 9 7 6 29 29 H 1.08999 * 109.46917 * 179.97438 * 9 7 6 30 30 H 1.09000 * 109.47179 * 299.99868 * 9 7 6 31 31 H 1.00907 * 110.99956 * 278.95838 * 10 7 6 32 32 H 1.08994 * 109.46908 * 300.00174 * 11 10 7 33 33 H 1.09001 * 109.46815 * 60.00215 * 11 10 7 34 34 H 0.97001 * 119.99916 * 180.02562 * 15 14 12 35 35 H 0.96701 * 113.99378 * 269.97162 * 21 20 6 36 36 H 1.08004 * 120.05142 * 359.74932 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0028 8 1 4.8924 4.9706 0.5925 9 6 4.3205 5.4260 -1.4338 10 7 3.0783 6.0300 0.5884 11 6 3.8386 7.1549 1.1494 12 6 2.8846 8.1615 1.7391 13 1 1.8200 7.9836 1.7006 14 6 3.3709 9.3100 2.3269 15 7 4.6672 9.5268 2.3733 16 14 2.1885 10.5582 3.0572 17 1 1.9412 10.2297 4.4842 18 1 2.7790 11.9170 2.9572 19 1 0.9052 10.5199 2.3109 20 6 4.0567 2.5210 0.0011 21 8 5.4137 2.5960 0.0021 22 6 3.4302 1.2840 0.0005 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.2121 2.3187 0.0003 27 1 1.3277 4.5114 0.0011 28 1 3.4055 5.4823 -2.0236 29 1 4.8121 6.3988 -1.4330 30 1 4.9877 4.6816 -1.8684 31 1 2.4044 6.3517 -0.0902 32 1 4.5080 6.7887 1.9277 33 1 4.4231 7.6278 0.3603 34 1 5.0094 10.3346 2.7871 35 1 5.8070 2.6181 -0.8810 36 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020200205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:32 Heat of formation + Delta-G solvation = -82.119015 kcal Electronic energy + Delta-G solvation = -18099.249283 eV Core-core repulsion = 15161.833753 eV Total energy + Delta-G solvation = -2937.415530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36472 -39.65002 -37.86615 -36.60912 -34.83617 -32.13370 -31.24382 -29.52479 -28.06466 -27.86114 -24.53327 -24.08504 -22.90868 -21.47894 -19.73998 -18.62661 -17.86023 -17.55602 -16.86375 -16.62051 -16.40473 -15.86347 -15.56872 -15.38060 -14.85489 -14.73001 -14.21654 -14.07528 -13.58543 -13.34194 -13.21355 -13.05156 -12.85131 -12.66533 -12.46952 -12.36506 -12.05389 -11.83295 -11.64973 -11.52047 -11.16739 -10.65985 -9.74097 -9.14499 -8.96559 -8.21171 -6.32486 0.27570 0.44397 1.41752 1.43902 1.54783 2.30724 2.40683 2.67599 3.12221 3.41897 3.52961 3.90052 3.94860 4.13058 4.30002 4.34678 4.37749 4.44280 4.56115 4.66967 4.76682 4.78635 4.90662 5.02868 5.09068 5.18568 5.25757 5.32113 5.47184 5.58305 5.66140 5.70323 6.04256 6.42757 6.47538 6.74096 6.85459 6.91415 7.38492 8.90411 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.004711 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.164466 B = 5941.841983 C = 6619.278247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.130 3.870 4 C -0.215 4.215 5 C -0.050 4.050 6 C -0.136 4.136 7 C 0.127 3.873 8 H 0.058 0.942 9 C -0.162 4.162 10 N -0.680 5.680 11 C 0.212 3.788 12 C -0.534 4.534 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.261 1.261 20 C 0.141 3.859 21 O -0.503 6.503 22 C -0.191 4.191 23 H 0.067 0.933 24 H 0.121 0.879 25 H 0.061 0.939 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.337 0.663 32 H -0.009 1.009 33 H -0.033 1.033 34 H 0.265 0.735 35 H 0.408 0.592 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -17.152 -9.168 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.085 3.915 4 C -0.233 4.233 5 C -0.068 4.068 6 C -0.137 4.137 7 C 0.016 3.984 8 H 0.077 0.923 9 C -0.221 4.221 10 N -0.310 5.310 11 C 0.085 3.915 12 C -0.572 4.572 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.798 3.202 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.185 1.185 20 C 0.095 3.905 21 O -0.316 6.316 22 C -0.210 4.210 23 H 0.086 0.914 24 H 0.140 0.860 25 H 0.079 0.921 26 H 0.170 0.830 27 H 0.152 0.848 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.009 0.991 33 H -0.015 1.015 34 H 0.073 0.927 35 H 0.267 0.733 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.856 -17.550 -7.907 20.433 hybrid contribution 0.192 1.465 -0.657 1.617 sum -6.664 -16.085 -8.564 19.403 Atomic orbital electron populations 1.23363 0.76333 1.05630 1.02336 1.86023 1.23535 1.26355 1.88674 1.18818 0.91780 0.84754 0.96165 1.21453 1.01240 0.91380 1.09229 1.20810 0.93416 0.97863 0.94713 1.20153 0.94537 0.93942 1.05111 1.20168 0.94375 0.89350 0.94462 0.92335 1.22317 1.02346 1.01241 0.96176 1.60602 1.17455 1.14784 1.38152 1.19173 0.92637 0.87423 0.92314 1.21554 0.94045 1.03976 1.37672 0.91554 1.25958 0.96965 1.00360 0.96454 1.70101 1.13961 1.27822 1.45655 0.85324 0.78833 0.77391 0.78681 1.20113 1.20733 1.18470 1.17942 0.83101 0.90769 0.98640 1.84764 1.15642 1.96058 1.35160 1.20608 0.92407 0.98005 1.09946 0.91445 0.86042 0.92073 0.83038 0.84823 0.91565 0.94015 0.90403 0.84538 0.99052 1.01529 0.92670 0.73290 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -7.42 10.49 -92.40 -0.97 -8.39 16 3 C 0.13 3.34 6.68 22.49 0.15 3.49 16 4 C -0.21 -5.34 9.04 22.38 0.20 -5.14 16 5 C -0.05 -1.47 9.31 22.24 0.21 -1.26 16 6 C -0.14 -4.38 5.07 -19.75 -0.10 -4.48 16 7 C 0.13 4.66 2.52 44.17 0.11 4.77 16 8 H 0.06 2.47 7.34 -2.39 -0.02 2.45 16 9 C -0.16 -4.93 9.14 71.98 0.66 -4.28 16 10 N -0.68 -29.48 5.24 -499.46 -2.62 -32.10 16 11 C 0.21 11.57 5.24 85.56 0.45 12.02 16 12 C -0.53 -30.71 9.32 25.60 0.24 -30.47 16 13 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 16 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.14 4.12 6.67 22.49 0.15 4.27 16 21 O -0.50 -13.55 12.63 -92.43 -1.17 -14.72 16 22 C -0.19 -5.11 9.93 22.46 0.22 -4.89 16 23 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 24 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 26 H 0.15 2.88 6.29 -2.91 -0.02 2.87 16 27 H 0.13 3.96 6.88 -2.91 -0.02 3.94 16 28 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 29 H 0.04 1.43 7.45 -2.39 -0.02 1.41 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.34 13.49 7.89 -89.69 -0.71 12.78 16 32 H -0.01 -0.53 8.05 -2.39 -0.02 -0.55 16 33 H -0.03 -1.90 7.44 -2.39 -0.02 -1.92 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.41 6.71 9.06 -74.06 -0.67 6.04 16 36 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -70.29 305.02 1.14 -69.15 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.28 Total: 20.59 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 3.86 Total: -24.11 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.33 Total: -89.09 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -2.14 Total: -23.11 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.29 1.14 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.966 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds