Wall clock time and date at job start Mon Mar 30 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 O 1.42904 * 109.47200 * 240.00108 * 2 1 3 5 5 C 1.52998 * 109.47113 * 120.00308 * 2 1 3 6 6 N 1.46899 * 109.47088 * 184.99936 * 5 2 1 7 7 C 1.46901 * 111.00012 * 179.97438 * 6 5 2 8 8 C 1.50701 * 109.47277 * 179.97438 * 7 6 5 9 9 C 1.38121 * 120.03541 * 260.00037 * 8 7 6 10 10 C 1.38277 * 120.06549 * 180.23523 * 9 8 7 11 11 C 1.38322 * 120.14210 * 359.48064 * 10 9 8 12 12 C 1.38077 * 120.06717 * 0.52076 * 11 10 9 13 13 C 1.38858 * 120.03515 * 79.97736 * 8 7 6 14 14 O 1.35754 * 120.06731 * 359.97438 * 13 8 7 15 15 C 1.34837 * 117.00233 * 174.42339 * 14 13 8 16 16 H 1.07998 * 119.99309 * 5.06540 * 15 14 13 17 17 C 1.38653 * 120.00284 * 185.06826 * 15 14 13 18 18 N 1.31552 * 119.99890 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 119.99987 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47268 * 89.99568 * 19 17 15 21 21 H 1.48500 * 109.47127 * 209.99927 * 19 17 15 22 22 H 1.48510 * 109.47248 * 329.99821 * 19 17 15 23 23 H 1.08993 * 109.47230 * 300.00018 * 1 2 3 24 24 H 1.09004 * 109.47120 * 60.00106 * 1 2 3 25 25 H 1.08994 * 109.47202 * 179.97438 * 1 2 3 26 26 H 0.96698 * 113.99743 * 300.00281 * 4 2 1 27 27 H 1.08997 * 109.47233 * 64.99687 * 5 2 1 28 28 H 1.08997 * 109.46914 * 304.99568 * 5 2 1 29 29 H 1.00898 * 111.00043 * 56.04417 * 6 5 2 30 30 H 1.08994 * 109.47310 * 59.99618 * 7 6 5 31 31 H 1.09001 * 109.46889 * 299.99530 * 7 6 5 32 32 H 1.07992 * 119.96209 * 359.95193 * 9 8 7 33 33 H 1.08005 * 119.92779 * 179.74836 * 10 9 8 34 34 H 1.08003 * 119.96534 * 180.27744 * 11 10 9 35 35 H 1.07997 * 120.03731 * 179.76191 * 12 11 10 36 36 H 0.96996 * 119.99889 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 7 3.5040 -0.6177 1.3111 7 6 4.0302 -1.3000 2.5008 8 6 5.5316 -1.1732 2.5297 9 6 6.3224 -2.2227 2.1043 10 6 7.7001 -2.1088 2.1351 11 6 8.2907 -0.9404 2.5817 12 6 7.5056 0.1123 3.0083 13 6 6.1215 -0.0009 2.9836 14 8 5.3469 1.0327 3.4015 15 6 5.9810 2.0954 3.9371 16 1 7.0603 2.1332 3.9434 17 6 5.2474 3.1393 4.4797 18 7 5.8660 4.1762 5.0018 19 14 3.3806 3.0733 4.4695 20 1 2.9015 2.4187 5.7133 21 1 2.8369 4.4532 4.3952 22 1 2.9192 2.2954 3.2915 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.7210 -1.5952 -1.2329 27 1 1.7516 -1.7715 1.2055 28 1 1.6054 -0.2618 2.1369 29 1 3.7995 0.3468 1.2874 30 1 3.7556 -2.3542 2.4663 31 1 3.6095 -0.8440 3.3970 32 1 5.8642 -3.1347 1.7516 33 1 8.3164 -2.9323 1.8058 34 1 9.3670 -0.8529 2.6003 35 1 7.9673 1.0229 3.3605 36 1 5.3528 4.9064 5.3818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034991581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:59 Heat of formation + Delta-G solvation = -81.448364 kcal Electronic energy + Delta-G solvation = -18428.139202 eV Core-core repulsion = 15490.752754 eV Total energy + Delta-G solvation = -2937.386448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01508 -38.97625 -38.24148 -36.25875 -34.46155 -32.83507 -31.33402 -30.67539 -27.59137 -27.03475 -24.62792 -23.20917 -22.57693 -22.00931 -19.76409 -18.91093 -17.76508 -16.97118 -16.70952 -16.54804 -15.98080 -15.83040 -15.51852 -15.32060 -15.25538 -14.82776 -14.33942 -14.11117 -13.89989 -13.33706 -13.16179 -13.02771 -12.89457 -12.70415 -12.53604 -12.43290 -12.16742 -11.95551 -11.74087 -11.27583 -10.93958 -10.87656 -9.72132 -9.35157 -9.00927 -8.51561 -6.22857 0.54299 0.72660 1.25415 1.29848 1.44018 2.22686 2.75603 3.00694 3.10023 3.35436 3.68172 3.82771 4.02302 4.07507 4.18326 4.30710 4.32601 4.46377 4.56513 4.61611 4.66026 4.69998 4.84651 4.85924 5.02892 5.15272 5.22743 5.28340 5.45594 5.64710 5.77357 5.80116 5.90163 6.06662 6.26492 6.29888 6.83471 6.97254 7.58028 8.60567 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.009262 C = 0.005820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.007801 B = 3022.315124 C = 4809.475754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 H 0.072 0.928 4 O -0.568 6.568 5 C 0.026 3.974 6 N -0.680 5.680 7 C 0.119 3.881 8 C -0.157 4.157 9 C -0.059 4.059 10 C -0.184 4.184 11 C -0.080 4.080 12 C -0.244 4.244 13 C 0.125 3.875 14 O -0.237 6.237 15 C -0.394 4.394 16 H 0.078 0.922 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.969 3.031 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.260 1.260 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.386 0.614 27 H 0.097 0.903 28 H 0.028 0.972 29 H 0.331 0.669 30 H 0.101 0.899 31 H 0.014 0.986 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -13.469 -7.637 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.046 3.954 3 H 0.090 0.910 4 O -0.375 6.375 5 C -0.104 4.104 6 N -0.310 5.310 7 C -0.009 4.009 8 C -0.158 4.158 9 C -0.077 4.077 10 C -0.202 4.202 11 C -0.098 4.098 12 C -0.264 4.264 13 C 0.076 3.924 14 O -0.144 6.144 15 C -0.471 4.471 16 H 0.095 0.905 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.184 1.184 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.098 0.902 26 H 0.235 0.765 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.032 0.968 32 H 0.171 0.829 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.295 -13.209 -8.063 17.558 hybrid contribution -0.501 1.081 1.366 1.813 sum -8.796 -12.128 -6.696 16.410 Atomic orbital electron populations 1.22387 0.94039 1.03850 1.02985 1.21820 0.93902 0.95610 0.84084 0.90983 1.86587 1.77880 1.29916 1.43168 1.22822 0.87747 1.02308 0.97483 1.60677 1.09966 1.20278 1.40062 1.20580 0.89886 0.99897 0.90551 1.19243 0.96165 0.92571 1.07828 1.21038 0.93452 0.97470 0.95757 1.21215 0.94988 0.98578 1.05399 1.21161 0.99970 0.92569 0.96122 1.21318 0.93714 1.01464 1.09859 1.19497 0.90493 0.88044 0.94377 1.83487 1.35255 1.24452 1.71250 1.20676 0.93090 0.95806 1.37532 0.90460 1.25223 1.04660 0.93850 0.95016 1.69729 1.38440 1.08924 1.39483 0.85249 0.78236 0.77939 0.79452 1.19476 1.19504 1.18369 0.91488 0.91427 0.90245 0.76510 0.88459 0.95370 0.85278 0.88091 0.96783 0.82943 0.83125 0.84551 0.87713 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.53 71.98 0.69 -2.35 16 2 C 0.11 2.54 3.76 30.59 0.12 2.66 16 3 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 4 O -0.57 -14.12 13.29 -148.98 -1.98 -16.10 16 5 C 0.03 0.66 5.32 86.30 0.46 1.12 16 6 N -0.68 -22.54 6.44 -517.95 -3.34 -25.87 16 7 C 0.12 4.00 5.48 85.56 0.47 4.47 16 8 C -0.16 -5.94 5.41 -19.74 -0.11 -6.04 16 9 C -0.06 -1.81 9.66 22.25 0.22 -1.60 16 10 C -0.18 -5.46 10.04 22.30 0.22 -5.24 16 11 C -0.08 -2.80 10.04 22.25 0.22 -2.58 16 12 C -0.24 -10.93 9.17 22.39 0.21 -10.73 16 13 C 0.13 5.84 6.62 22.58 0.15 5.99 16 14 O -0.24 -12.55 7.78 -22.86 -0.18 -12.72 16 15 C -0.39 -23.16 9.95 67.92 0.68 -22.49 16 16 H 0.08 4.82 5.44 -2.91 -0.02 4.80 16 17 C 0.01 0.61 5.49 84.83 0.47 1.08 16 18 N -0.92 -55.51 13.96 21.61 0.30 -55.21 16 19 Si 0.97 45.18 28.62 68.60 1.96 47.14 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.39 6.23 9.04 -74.06 -0.67 5.56 16 27 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.33 13.08 8.67 -89.70 -0.78 12.30 16 30 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 31 H 0.01 0.53 7.86 -2.39 -0.02 0.51 16 32 H 0.15 3.55 8.03 -2.91 -0.02 3.52 16 33 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 35 H 0.10 5.18 5.64 -2.91 -0.02 5.16 16 36 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -67.80 307.85 0.20 -67.60 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.35 Total: 30.87 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 3.78 Total: -35.71 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -3.03 Total: -81.08 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -2.16 Total: -28.82 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.96 Total: 47.14 kcal Total: -67.80 0.20 -67.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034991581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.852 kcal (2) G-P(sol) polarization free energy of solvation -67.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds