Wall clock time and date at job start Mon Mar 30 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46625 * 2 1 4 4 C 1.52997 * 109.47398 * 119.99870 * 2 1 3 5 5 O 1.42899 * 109.46975 * 55.00296 * 4 2 1 6 6 N 1.46902 * 109.47164 * 240.00132 * 2 1 3 7 7 C 1.46905 * 110.99757 * 84.99754 * 6 2 1 8 8 C 1.50701 * 109.46928 * 180.02562 * 7 6 2 9 9 C 1.38295 * 119.93297 * 89.99748 * 8 7 6 10 10 C 1.38099 * 120.06865 * 180.25412 * 9 8 7 11 11 C 1.38882 * 119.93206 * 359.47410 * 10 9 8 12 12 O 1.35746 * 120.07145 * 180.25590 * 11 10 9 13 13 C 1.34834 * 117.00340 * 174.73672 * 12 11 10 14 14 H 1.08003 * 119.99155 * 5.05417 * 13 12 11 15 15 C 1.38652 * 120.00189 * 185.05311 * 13 12 11 16 16 N 1.31551 * 120.00092 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99829 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46814 * 60.00203 * 17 15 13 19 19 H 1.48500 * 109.47169 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47317 * 300.00038 * 17 15 13 21 21 C 1.38876 * 119.85943 * 0.52538 * 11 10 9 22 22 C 1.38100 * 119.93177 * 359.72571 * 21 11 10 23 23 H 1.09002 * 109.47625 * 60.00095 * 1 2 3 24 24 H 1.09008 * 109.46625 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47231 * 299.99279 * 1 2 3 26 26 H 1.08998 * 109.46969 * 175.00415 * 4 2 1 27 27 H 1.08994 * 109.47313 * 295.00503 * 4 2 1 28 28 H 0.96706 * 113.99922 * 179.97438 * 5 4 2 29 29 H 1.00895 * 111.00197 * 208.94700 * 6 2 1 30 30 H 1.08996 * 109.47200 * 60.00403 * 7 6 2 31 31 H 1.09003 * 109.46980 * 299.99557 * 7 6 2 32 32 H 1.08000 * 119.96836 * 359.97438 * 9 8 7 33 33 H 1.08002 * 120.03655 * 179.72759 * 10 9 8 34 34 H 0.97006 * 120.00187 * 180.02562 * 16 15 13 35 35 H 1.07996 * 120.03796 * 179.70626 * 21 11 10 36 36 H 1.07997 * 119.96864 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.4703 -2.0303 1.3094 6 7 2.0197 -0.6925 -1.1995 7 6 2.0824 0.2227 -2.3469 8 6 2.5873 -0.5217 -3.5561 9 6 1.6926 -1.1517 -4.4018 10 6 2.1526 -1.8390 -5.5078 11 6 3.5143 -1.8880 -5.7763 12 8 3.9691 -2.5584 -6.8655 13 6 5.2890 -2.4755 -7.1284 14 1 5.9454 -1.9632 -6.4405 15 6 5.8035 -3.0479 -8.2817 16 7 5.0039 -3.6715 -9.1198 17 14 7.6320 -2.9324 -8.6462 18 1 8.3969 -3.5817 -7.5513 19 1 7.9253 -3.6197 -9.9295 20 1 8.0274 -1.5045 -8.7471 21 6 4.4102 -1.2543 -4.9251 22 6 3.9444 -0.5730 -3.8179 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 3.1263 -0.7993 1.2055 27 1 1.7517 -0.1583 2.1369 28 1 1.7507 -2.5464 2.0777 29 1 2.9173 -1.1204 -1.0288 30 1 2.7588 1.0463 -2.1183 31 1 1.0869 0.6163 -2.5525 32 1 0.6335 -1.1099 -4.1948 33 1 1.4538 -2.3345 -6.1655 34 1 5.3639 -4.0723 -9.9265 35 1 5.4700 -1.2946 -5.1286 36 1 4.6405 -0.0804 -3.1553 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037258195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:13 Heat of formation + Delta-G solvation = -80.464639 kcal Electronic energy + Delta-G solvation = -17679.730872 eV Core-core repulsion = 14742.387081 eV Total energy + Delta-G solvation = -2937.343791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79626 -39.12761 -38.17410 -36.19122 -34.31919 -32.57273 -31.76351 -29.80279 -27.58603 -27.23508 -25.15524 -23.60219 -21.94904 -21.32179 -19.83641 -18.85486 -18.39652 -16.97653 -16.43395 -16.33901 -16.18976 -15.68747 -15.51121 -15.26760 -14.96833 -14.38385 -14.37032 -14.09021 -13.67751 -13.51064 -13.29076 -12.99541 -12.80869 -12.46330 -12.34075 -12.16036 -12.14731 -11.91308 -11.56459 -11.17108 -10.84418 -10.77290 -9.76998 -9.26106 -8.89074 -8.46538 -6.15168 0.61269 0.68756 1.34957 1.46065 1.51730 2.18471 2.78913 3.11146 3.39179 3.52233 3.60861 4.00655 4.07014 4.08865 4.20406 4.25599 4.47831 4.56324 4.61704 4.63872 4.73084 4.80965 4.86659 5.02009 5.07134 5.11636 5.15618 5.31928 5.51069 5.59470 5.71791 5.82674 6.03250 6.17650 6.27970 6.53402 6.97806 7.01547 7.79273 8.76756 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.040714 B = 0.003841 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.566899 B = 7287.439215 C = 7531.147769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.075 3.925 5 O -0.582 6.582 6 N -0.687 5.687 7 C 0.121 3.879 8 C -0.158 4.158 9 C -0.049 4.049 10 C -0.207 4.207 11 C 0.113 3.887 12 O -0.234 6.234 13 C -0.416 4.416 14 H 0.102 0.898 15 C -0.024 4.024 16 N -0.922 5.922 17 Si 1.020 2.980 18 H -0.257 1.257 19 H -0.272 1.272 20 H -0.257 1.257 21 C -0.243 4.243 22 C -0.062 4.062 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.391 0.609 29 H 0.341 0.659 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.110 0.890 34 H 0.273 0.727 35 H 0.120 0.880 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 9.317 20.353 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.003 4.003 5 O -0.390 6.390 6 N -0.320 5.320 7 C -0.007 4.007 8 C -0.159 4.159 9 C -0.068 4.068 10 C -0.227 4.227 11 C 0.063 3.937 12 O -0.141 6.141 13 C -0.492 4.492 14 H 0.119 0.881 15 C -0.221 4.221 16 N -0.560 5.560 17 Si 0.839 3.161 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.181 1.181 21 C -0.262 4.262 22 C -0.080 4.080 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.239 0.761 29 H 0.159 0.841 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.158 0.842 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.182 9.034 19.297 21.714 hybrid contribution 1.710 -0.033 -0.016 1.710 sum -2.472 9.001 19.281 21.422 Atomic orbital electron populations 1.21639 0.94366 1.01713 1.01235 1.21762 0.96853 0.95845 0.88748 0.91448 1.22394 0.96447 0.84249 0.97173 1.86581 1.73023 1.27750 1.51598 1.60458 1.33886 1.33436 1.04217 1.20681 1.00565 0.92168 0.87258 1.19646 0.92724 1.04609 0.98879 1.20825 1.00062 0.94081 0.91795 1.20458 0.92119 1.07869 1.02216 1.19938 0.94263 0.91536 0.87973 1.83943 1.27038 1.62713 1.40367 1.21809 0.81018 1.38304 1.08067 0.88061 1.26620 1.05971 0.95383 0.94112 1.70185 1.38104 1.35504 1.12246 0.84638 0.73591 0.79521 0.78383 1.18093 1.19621 1.18088 1.21233 0.99693 1.06311 0.98949 1.20952 0.95545 0.96416 0.95113 0.93265 0.93333 0.91436 0.93109 0.91243 0.76062 0.84071 0.93499 0.90185 0.84245 0.87170 0.91826 0.86274 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.22 71.98 0.66 -1.79 16 2 C 0.08 1.37 3.02 44.91 0.14 1.50 16 3 H 0.07 0.99 7.80 -2.38 -0.02 0.97 16 4 C 0.08 1.08 6.60 71.98 0.47 1.56 16 5 O -0.58 -10.54 12.73 -148.98 -1.90 -12.44 16 6 N -0.69 -15.98 6.25 -495.56 -3.10 -19.08 16 7 C 0.12 2.89 5.61 85.56 0.48 3.37 16 8 C -0.16 -5.06 5.40 -19.83 -0.11 -5.17 16 9 C -0.05 -1.77 9.69 22.25 0.22 -1.55 16 10 C -0.21 -9.31 9.99 22.39 0.22 -9.08 16 11 C 0.11 5.83 6.65 22.58 0.15 5.98 16 12 O -0.23 -14.49 9.76 -22.74 -0.22 -14.71 16 13 C -0.42 -24.71 9.49 67.92 0.64 -24.06 16 14 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 15 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 16 N -0.92 -57.61 13.67 21.61 0.30 -57.31 16 17 Si 1.02 43.26 29.55 68.60 2.03 45.28 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 22 C -0.06 -2.14 9.69 22.25 0.22 -1.92 16 23 H 0.05 0.92 7.45 -2.39 -0.02 0.91 16 24 H 0.05 1.13 7.56 -2.38 -0.02 1.11 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.65 8.02 -2.39 -0.02 0.63 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.39 3.55 9.12 -74.05 -0.68 2.87 16 29 H 0.34 8.03 8.27 -89.70 -0.74 7.29 16 30 H 0.05 0.96 8.00 -2.39 -0.02 0.94 16 31 H 0.08 1.81 7.38 -2.39 -0.02 1.79 16 32 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 35 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 36 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -74.10 306.49 0.56 -73.54 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.32 Total: 27.33 kcal Atomic # 6 Polarization: -46.37 SS G_CDS: 3.77 Total: -42.61 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.80 Total: -76.39 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -2.12 Total: -27.15 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -74.10 0.56 -73.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.928 kcal (2) G-P(sol) polarization free energy of solvation -74.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds