Wall clock time and date at job start Mon Mar 30 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47212 * 2 1 4 4 C 1.53000 * 109.47489 * 239.99569 * 2 1 3 5 5 O 1.42900 * 109.46800 * 304.99956 * 4 2 1 6 6 N 1.46907 * 109.47259 * 119.99330 * 2 1 3 7 7 C 1.46898 * 110.99991 * 275.00270 * 6 2 1 8 8 C 1.50703 * 109.46938 * 179.97438 * 7 6 2 9 9 C 1.38118 * 120.03903 * 260.27478 * 8 7 6 10 10 C 1.38276 * 120.07131 * 180.32323 * 9 8 7 11 11 C 1.38326 * 120.13987 * 359.67854 * 10 9 8 12 12 C 1.38081 * 120.06541 * 0.02562 * 11 10 9 13 13 C 1.38861 * 120.03450 * 80.00159 * 8 7 6 14 14 O 1.35755 * 120.06752 * 359.97280 * 13 8 7 15 15 C 1.34833 * 116.99924 * 185.32681 * 14 13 8 16 16 H 1.07997 * 119.99792 * 354.93273 * 15 14 13 17 17 C 1.38663 * 119.99922 * 174.93495 * 15 14 13 18 18 N 1.31559 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46995 * 90.00219 * 19 17 15 21 21 H 1.48501 * 109.47226 * 209.99916 * 19 17 15 22 22 H 1.48499 * 109.47308 * 330.00192 * 19 17 15 23 23 H 1.08998 * 109.47091 * 300.00390 * 1 2 3 24 24 H 1.09000 * 109.47034 * 60.00785 * 1 2 3 25 25 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46574 * 64.99609 * 4 2 1 27 27 H 1.08994 * 109.47371 * 185.00148 * 4 2 1 28 28 H 0.96698 * 113.99877 * 179.97438 * 5 4 2 29 29 H 1.00900 * 110.99509 * 38.95689 * 6 2 1 30 30 H 1.09001 * 109.46886 * 60.00107 * 7 6 2 31 31 H 1.09000 * 109.47299 * 299.99413 * 7 6 2 32 32 H 1.08007 * 119.96125 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.93537 * 179.70065 * 10 9 8 34 34 H 1.07997 * 119.96891 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.03230 * 180.02562 * 12 11 10 36 36 H 0.96993 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3092 6 7 2.0197 -0.6924 1.1996 7 6 2.0824 0.2228 2.3469 8 6 2.5873 -0.5215 3.5561 9 6 1.6972 -0.9785 4.5082 10 6 2.1603 -1.6557 5.6213 11 6 3.5152 -1.8835 5.7818 12 6 4.4096 -1.4344 4.8305 13 6 3.9476 -0.7536 3.7115 14 8 4.8245 -0.3110 2.7744 15 6 6.1163 -0.6647 2.9295 16 1 6.4263 -1.2035 3.8126 17 6 7.0467 -0.3365 1.9552 18 7 6.6691 0.3203 0.8797 19 14 8.8365 -0.8258 2.1704 20 1 9.0573 -2.1689 1.5766 21 1 9.7063 0.1659 1.4883 22 1 9.1689 -0.8636 3.6172 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -0.1585 -2.1369 27 1 3.1263 -0.7995 -1.2055 28 1 1.7500 -2.5463 -2.0778 29 1 1.4496 -1.4978 1.4102 30 1 1.0870 0.6165 2.5525 31 1 2.7588 1.0464 2.1182 32 1 0.6386 -0.8025 4.3855 33 1 1.4627 -2.0078 6.3668 34 1 3.8738 -2.4130 6.6520 35 1 5.4674 -1.6129 4.9562 36 1 7.3200 0.5502 0.1983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037258201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:22 Heat of formation + Delta-G solvation = -54.015612 kcal Electronic energy + Delta-G solvation = -18548.387682 eV Core-core repulsion = 15612.190807 eV Total energy + Delta-G solvation = -2936.196875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.09241 -37.53869 -36.29202 -35.07509 -32.24505 -31.65083 -29.12655 -28.39296 -26.12704 -25.27952 -24.10280 -21.46294 -20.43883 -20.23231 -17.84728 -17.18110 -16.75132 -15.26442 -14.90607 -14.84054 -14.50697 -14.08168 -13.87201 -13.59779 -13.37988 -13.19919 -12.61224 -12.44115 -12.18621 -12.07560 -11.63164 -11.36972 -11.23169 -10.90129 -10.82961 -10.71608 -10.57484 -10.36030 -10.28782 -9.61680 -9.21831 -8.76088 -8.05307 -7.66696 -7.10581 -6.36573 -3.93596 2.20657 2.47884 3.16662 3.18209 3.21519 4.02712 4.51651 4.65740 4.89381 5.17890 5.24801 5.37330 5.45743 5.60149 5.66859 5.69888 5.73862 5.82356 5.97727 6.06451 6.10412 6.19654 6.30783 6.39968 6.50518 6.52028 6.77616 6.99831 7.18566 7.29077 7.44854 7.48827 7.68341 7.92131 7.94810 8.07710 8.08392 9.09101 9.82201 10.80709 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.008489 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.875641 B = 3297.491536 C = 4865.872994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.088 3.912 3 H 0.086 0.914 4 C 0.087 3.913 5 O -0.571 6.571 6 N -0.660 5.660 7 C 0.122 3.878 8 C -0.164 4.164 9 C -0.071 4.071 10 C -0.220 4.220 11 C -0.073 4.073 12 C -0.240 4.240 13 C 0.174 3.826 14 O -0.159 6.159 15 C -0.391 4.391 16 H 0.088 0.912 17 C 0.042 3.958 18 N -0.856 5.856 19 Si 0.936 3.064 20 H -0.274 1.274 21 H -0.279 1.279 22 H -0.269 1.269 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.371 0.629 29 H 0.339 0.661 30 H 0.020 0.980 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.273 -1.435 -0.830 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.023 4.023 3 H 0.104 0.896 4 C 0.009 3.991 5 O -0.375 6.375 6 N -0.290 5.290 7 C -0.006 4.006 8 C -0.166 4.166 9 C -0.090 4.090 10 C -0.239 4.239 11 C -0.091 4.091 12 C -0.259 4.259 13 C 0.119 3.881 14 O -0.061 6.061 15 C -0.467 4.467 16 H 0.106 0.894 17 C -0.162 4.162 18 N -0.491 5.491 19 Si 0.761 3.239 20 H -0.200 1.200 21 H -0.204 1.204 22 H -0.193 1.193 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.217 0.783 29 H 0.158 0.842 30 H 0.038 0.962 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.143 0.857 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.784 -0.886 -0.870 7.883 hybrid contribution 0.311 -0.395 -0.089 0.511 sum -7.474 -1.281 -0.959 7.643 Atomic orbital electron populations 1.22416 0.97682 1.02319 1.01081 1.21564 0.92294 0.97542 0.90857 0.89597 1.22257 0.98090 0.82967 0.95825 1.86443 1.72781 1.27943 1.50334 1.60434 1.56859 1.09017 1.02726 1.20542 0.97393 0.94698 0.87939 1.18820 0.90824 1.08488 0.98443 1.20542 0.97507 0.97140 0.93805 1.20510 0.95250 1.08039 1.00071 1.20737 0.93239 0.97706 0.97439 1.21179 1.00346 1.07551 0.96834 1.19094 0.89721 0.90749 0.88513 1.84024 1.17199 1.62760 1.42134 1.21309 0.80974 1.37765 1.06663 0.89412 1.25209 0.99739 0.96626 0.94674 1.70056 1.34762 1.36225 1.08066 0.85789 0.80894 0.78464 0.78726 1.19997 1.20400 1.19330 0.93247 0.92874 0.91795 0.94476 0.92014 0.78288 0.84243 0.96220 0.90298 0.87549 0.87891 0.87736 0.85686 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.96 37.16 0.33 -2.07 16 2 C 0.09 1.43 2.99 -67.71 -0.20 1.23 16 3 H 0.09 1.42 7.80 -51.93 -0.40 1.01 16 4 C 0.09 1.34 6.88 37.16 0.26 1.60 16 5 O -0.57 -8.45 12.73 -35.23 -0.45 -8.90 16 6 N -0.66 -12.68 6.19 -107.99 -0.67 -13.35 16 7 C 0.12 2.40 5.28 -4.98 -0.03 2.37 16 8 C -0.16 -3.49 5.41 -104.43 -0.56 -4.06 16 9 C -0.07 -1.32 9.66 -39.61 -0.38 -1.70 16 10 C -0.22 -3.97 10.04 -39.53 -0.40 -4.37 16 11 C -0.07 -1.39 10.04 -39.61 -0.40 -1.79 16 12 C -0.24 -5.39 9.17 -39.39 -0.36 -5.75 16 13 C 0.17 4.27 6.62 -39.11 -0.26 4.01 16 14 O -0.16 -4.49 9.00 0.03 0.00 -4.49 16 15 C -0.39 -10.97 9.49 30.89 0.29 -10.67 16 16 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 17 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 18 N -0.86 -24.84 13.67 55.48 0.76 -24.08 16 19 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.91 7.55 -51.93 -0.39 0.52 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.37 3.87 9.12 45.56 0.42 4.28 16 29 H 0.34 6.37 8.46 -39.29 -0.33 6.04 16 30 H 0.02 0.34 7.30 -51.93 -0.38 -0.04 16 31 H 0.08 1.73 7.77 -51.93 -0.40 1.32 16 32 H 0.11 1.67 8.04 -52.48 -0.42 1.25 16 33 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 305.68 15.07 4.61 4.61 Total: -1.00 -31.09 305.68 -6.70 -37.80 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -4.12 Total: 12.86 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.81 Total: -20.14 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.09 Total: -37.42 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.45 Total: -13.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.09 -6.70 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.220 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds