Wall clock time and date at job start Mon Mar 30 2020 05:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47212 * 2 1 4 4 C 1.53000 * 109.47489 * 239.99569 * 2 1 3 5 5 O 1.42900 * 109.46800 * 304.99956 * 4 2 1 6 6 N 1.46907 * 109.47259 * 119.99330 * 2 1 3 7 7 C 1.46898 * 110.99991 * 275.00270 * 6 2 1 8 8 C 1.50703 * 109.46938 * 179.97438 * 7 6 2 9 9 C 1.38118 * 120.03903 * 260.27478 * 8 7 6 10 10 C 1.38276 * 120.07131 * 180.32323 * 9 8 7 11 11 C 1.38326 * 120.13987 * 359.67854 * 10 9 8 12 12 C 1.38081 * 120.06541 * 0.02562 * 11 10 9 13 13 C 1.38861 * 120.03450 * 80.00159 * 8 7 6 14 14 O 1.35755 * 120.06752 * 359.97280 * 13 8 7 15 15 C 1.34833 * 116.99924 * 185.32681 * 14 13 8 16 16 H 1.07997 * 119.99792 * 354.93273 * 15 14 13 17 17 C 1.38663 * 119.99922 * 174.93495 * 15 14 13 18 18 N 1.31559 * 119.99878 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46995 * 90.00219 * 19 17 15 21 21 H 1.48501 * 109.47226 * 209.99916 * 19 17 15 22 22 H 1.48499 * 109.47308 * 330.00192 * 19 17 15 23 23 H 1.08998 * 109.47091 * 300.00390 * 1 2 3 24 24 H 1.09000 * 109.47034 * 60.00785 * 1 2 3 25 25 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46574 * 64.99609 * 4 2 1 27 27 H 1.08994 * 109.47371 * 185.00148 * 4 2 1 28 28 H 0.96698 * 113.99877 * 179.97438 * 5 4 2 29 29 H 1.00900 * 110.99509 * 38.95689 * 6 2 1 30 30 H 1.09001 * 109.46886 * 60.00107 * 7 6 2 31 31 H 1.09000 * 109.47299 * 299.99413 * 7 6 2 32 32 H 1.08007 * 119.96125 * 0.02562 * 9 8 7 33 33 H 1.08004 * 119.93537 * 179.70065 * 10 9 8 34 34 H 1.07997 * 119.96891 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.03230 * 180.02562 * 12 11 10 36 36 H 0.96993 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.4703 -2.0304 -1.3092 6 7 2.0197 -0.6924 1.1996 7 6 2.0824 0.2228 2.3469 8 6 2.5873 -0.5215 3.5561 9 6 1.6972 -0.9785 4.5082 10 6 2.1603 -1.6557 5.6213 11 6 3.5152 -1.8835 5.7818 12 6 4.4096 -1.4344 4.8305 13 6 3.9476 -0.7536 3.7115 14 8 4.8245 -0.3110 2.7744 15 6 6.1163 -0.6647 2.9295 16 1 6.4263 -1.2035 3.8126 17 6 7.0467 -0.3365 1.9552 18 7 6.6691 0.3203 0.8797 19 14 8.8365 -0.8258 2.1704 20 1 9.0573 -2.1689 1.5766 21 1 9.7063 0.1659 1.4883 22 1 9.1689 -0.8636 3.6172 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.7516 -0.1585 -2.1369 27 1 3.1263 -0.7995 -1.2055 28 1 1.7500 -2.5463 -2.0778 29 1 1.4496 -1.4978 1.4102 30 1 1.0870 0.6165 2.5525 31 1 2.7588 1.0464 2.1182 32 1 0.6386 -0.8025 4.3855 33 1 1.4627 -2.0078 6.3668 34 1 3.8738 -2.4130 6.6520 35 1 5.4674 -1.6129 4.9562 36 1 7.3200 0.5502 0.1983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037258201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:22 Heat of formation + Delta-G solvation = -77.853446 kcal Electronic energy + Delta-G solvation = -18549.421368 eV Core-core repulsion = 15612.190807 eV Total energy + Delta-G solvation = -2937.230561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80481 -38.88566 -38.00914 -36.41545 -34.22141 -33.13915 -30.69869 -29.95088 -27.37068 -27.22667 -25.64107 -23.18816 -22.03057 -21.56405 -19.71790 -18.65461 -18.31247 -16.77960 -16.54621 -16.34878 -16.14317 -15.68848 -15.28695 -15.14975 -15.04333 -14.67774 -14.27463 -13.80844 -13.55064 -13.51004 -13.39666 -12.92169 -12.85485 -12.46967 -12.33142 -12.15204 -12.10335 -11.99349 -11.74367 -11.06433 -10.82589 -10.73897 -9.63860 -9.09447 -8.86014 -8.38858 -6.04462 0.59713 0.83846 1.35274 1.44617 1.51244 2.20744 2.87265 3.16212 3.48950 3.53553 3.65858 3.99633 4.07254 4.11963 4.27613 4.36900 4.44026 4.48714 4.59578 4.65448 4.74202 4.79919 4.90388 4.98242 5.08127 5.15151 5.21938 5.34129 5.39440 5.71321 5.78392 5.83294 6.08486 6.26166 6.33574 6.64985 6.95175 7.05583 7.90645 8.82982 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.008489 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.875641 B = 3297.491536 C = 4865.872994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.081 3.919 3 H 0.075 0.925 4 C 0.093 3.907 5 O -0.580 6.580 6 N -0.682 5.682 7 C 0.132 3.868 8 C -0.173 4.173 9 C -0.068 4.068 10 C -0.197 4.197 11 C -0.074 4.074 12 C -0.258 4.258 13 C 0.133 3.867 14 O -0.206 6.206 15 C -0.414 4.414 16 H 0.093 0.907 17 C -0.017 4.017 18 N -0.909 5.909 19 Si 1.010 2.990 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.256 1.256 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.390 0.610 29 H 0.341 0.659 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.216 -2.517 0.660 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.029 4.029 3 H 0.093 0.907 4 C 0.015 3.985 5 O -0.387 6.387 6 N -0.313 5.313 7 C 0.003 3.997 8 C -0.175 4.175 9 C -0.086 4.086 10 C -0.216 4.216 11 C -0.092 4.092 12 C -0.278 4.278 13 C 0.082 3.918 14 O -0.111 6.111 15 C -0.490 4.490 16 H 0.111 0.889 17 C -0.215 4.215 18 N -0.546 5.546 19 Si 0.831 3.169 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.180 1.180 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.239 0.761 29 H 0.159 0.841 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.131 0.869 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.768 -1.991 0.649 9.990 hybrid contribution 0.649 -0.140 -0.392 0.771 sum -9.118 -2.131 0.256 9.368 Atomic orbital electron populations 1.22247 0.94893 1.02445 1.02361 1.21663 0.94477 0.96783 0.89956 0.90667 1.22117 0.95733 0.83872 0.96812 1.86388 1.72590 1.27852 1.51882 1.60341 1.58010 1.09518 1.03454 1.20375 0.97844 0.93636 0.87799 1.19244 0.90148 1.08352 0.99727 1.21006 0.98960 0.95851 0.92832 1.21100 0.95366 1.05113 0.99996 1.21144 0.93506 0.97060 0.97494 1.21319 1.00665 1.08264 0.97518 1.19715 0.90803 0.92345 0.88985 1.84001 1.17549 1.65270 1.44306 1.21746 0.81791 1.38225 1.07262 0.88934 1.26402 1.04522 0.96487 0.94138 1.70204 1.36464 1.38593 1.09385 0.84703 0.74651 0.78289 0.79296 1.19207 1.19577 1.17996 0.92583 0.90952 0.92099 0.91407 0.95944 0.76117 0.84059 0.93063 0.93995 0.83687 0.83445 0.84270 0.86913 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 8.96 71.98 0.65 -3.41 16 2 C 0.08 2.65 2.99 44.91 0.13 2.79 16 3 H 0.08 2.58 7.80 -2.38 -0.02 2.56 16 4 C 0.09 2.91 6.88 71.98 0.50 3.41 16 5 O -0.58 -16.79 12.73 -148.98 -1.90 -18.69 16 6 N -0.68 -26.69 6.19 -495.56 -3.07 -29.76 16 7 C 0.13 5.23 5.28 85.56 0.45 5.68 16 8 C -0.17 -7.33 5.41 -19.74 -0.11 -7.44 16 9 C -0.07 -2.29 9.66 22.25 0.22 -2.07 16 10 C -0.20 -6.21 10.04 22.30 0.22 -5.99 16 11 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 12 C -0.26 -11.70 9.17 22.39 0.21 -11.50 16 13 C 0.13 6.74 6.62 22.58 0.15 6.89 16 14 O -0.21 -12.40 9.00 -22.82 -0.21 -12.60 16 15 C -0.41 -24.55 9.49 67.92 0.64 -23.91 16 16 H 0.09 5.14 5.20 -2.91 -0.02 5.13 16 17 C -0.02 -0.99 5.49 84.84 0.47 -0.53 16 18 N -0.91 -55.87 13.67 21.62 0.30 -55.58 16 19 Si 1.01 43.91 29.55 68.60 2.03 45.94 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H 0.06 1.33 7.45 -2.39 -0.02 1.31 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.59 7.55 -2.39 -0.02 1.57 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.39 7.80 9.12 -74.06 -0.68 7.13 16 29 H 0.34 12.70 8.46 -89.69 -0.76 11.94 16 30 H 0.05 1.67 7.30 -2.39 -0.02 1.65 16 31 H 0.04 1.95 7.77 -2.39 -0.02 1.93 16 32 H 0.15 3.78 8.04 -2.91 -0.02 3.76 16 33 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.11 5.25 5.64 -2.91 -0.02 5.24 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.40 305.68 0.57 -71.84 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -0.33 Total: 37.33 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.75 Total: -38.48 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.77 Total: -85.33 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -2.10 Total: -31.29 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.40 0.57 -71.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.017 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds