Wall clock time and date at job start Mon Mar 30 2020 05:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47198 * 2 1 4 4 C 1.53000 * 109.47359 * 120.00531 * 2 1 3 5 5 O 1.42899 * 109.47184 * 54.99573 * 4 2 1 6 6 N 1.46899 * 109.47026 * 240.00306 * 2 1 3 7 7 C 1.46904 * 111.00155 * 84.99866 * 6 2 1 8 8 C 1.50700 * 109.47383 * 180.02562 * 7 6 2 9 9 C 1.38326 * 119.96102 * 269.72710 * 8 7 6 10 10 C 1.38288 * 120.13244 * 179.76334 * 9 8 7 11 11 C 1.38114 * 120.07278 * 0.51071 * 10 9 8 12 12 C 1.38865 * 119.93045 * 359.74244 * 11 10 9 13 13 O 1.35748 * 120.07231 * 179.97438 * 12 11 10 14 14 C 1.34831 * 116.99622 * 354.48321 * 13 12 11 15 15 H 1.08003 * 119.99995 * 5.06110 * 14 13 12 16 16 C 1.38655 * 119.99762 * 185.06419 * 14 13 12 17 17 N 1.31558 * 119.99732 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00222 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47001 * 90.00301 * 18 16 14 20 20 H 1.48499 * 109.47126 * 210.00646 * 18 16 14 21 21 H 1.48504 * 109.46789 * 330.00152 * 18 16 14 22 22 C 1.38077 * 119.96668 * 89.99255 * 8 7 6 23 23 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46828 * 299.99675 * 1 2 3 25 25 H 1.08992 * 109.47133 * 59.99513 * 1 2 3 26 26 H 1.08998 * 109.47388 * 175.00193 * 4 2 1 27 27 H 1.09007 * 109.46939 * 294.99535 * 4 2 1 28 28 H 0.96699 * 113.99856 * 180.02562 * 5 4 2 29 29 H 1.00897 * 111.00651 * 208.95689 * 6 2 1 30 30 H 1.09005 * 109.46717 * 300.00061 * 7 6 2 31 31 H 1.09000 * 109.46900 * 60.00012 * 7 6 2 32 32 H 1.07991 * 119.93198 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.96112 * 180.25607 * 10 9 8 34 34 H 1.07996 * 120.03851 * 179.76597 * 11 10 9 35 35 H 0.97000 * 120.00039 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.03491 * 359.96756 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 1.2492 5 8 1.4703 -2.0304 1.3093 6 7 2.0197 -0.6924 -1.1995 7 6 2.0824 0.2227 -2.3469 8 6 2.5873 -0.5216 -3.5561 9 6 3.9440 -0.5690 -3.8215 10 6 4.4115 -1.2551 -4.9274 11 6 3.5238 -1.8865 -5.7764 12 6 2.1608 -1.8363 -5.5156 13 8 1.2856 -2.4554 -6.3485 14 6 1.7925 -3.0037 -7.4711 15 1 2.8601 -3.0105 -7.6343 16 6 0.9431 -3.5587 -8.4161 17 7 1.4378 -4.0941 -9.5113 18 14 -0.9034 -3.5474 -8.1336 19 1 -1.4839 -2.3055 -8.7044 20 1 -1.5127 -4.7286 -8.7959 21 1 -1.1813 -3.5992 -6.6757 22 6 1.6947 -1.1509 -4.4010 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 3.1264 -0.7995 1.2055 27 1 1.7518 -0.1584 2.1370 28 1 1.7500 -2.5462 2.0779 29 1 2.9173 -1.1205 -1.0289 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 4.6398 -0.0721 -3.1618 33 1 5.4717 -1.2939 -5.1296 34 1 3.8892 -2.4190 -6.6420 35 1 0.8436 -4.4827 -10.1723 36 1 0.6352 -1.1103 -4.1953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037258211.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:25 Heat of formation + Delta-G solvation = -77.370223 kcal Electronic energy + Delta-G solvation = -17847.443802 eV Core-core repulsion = 14910.234195 eV Total energy + Delta-G solvation = -2937.209607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92015 -39.18239 -38.24466 -36.26900 -34.46352 -33.06035 -31.18816 -30.09523 -27.55120 -27.20774 -25.58085 -23.27830 -22.09205 -21.35861 -19.66983 -18.88751 -18.39552 -16.97223 -16.76554 -16.53750 -16.24138 -15.73055 -15.64883 -15.22447 -14.87528 -14.62951 -14.27943 -14.12640 -14.05799 -13.45005 -13.31275 -13.05521 -12.83731 -12.51336 -12.44371 -12.23377 -12.14983 -11.89224 -11.60723 -11.27226 -10.91612 -10.83444 -9.70528 -9.28135 -9.05021 -8.50588 -6.23062 0.50027 0.69323 1.29957 1.34055 1.51300 2.27827 2.72911 3.02795 3.08120 3.37244 3.57762 3.98162 4.01108 4.10445 4.20903 4.30555 4.43036 4.55058 4.57098 4.60952 4.66086 4.73479 4.84801 4.96845 5.02350 5.05548 5.24922 5.39593 5.49560 5.67510 5.73418 5.78758 5.91681 6.14519 6.27127 6.52835 6.84107 7.02468 7.59830 8.61186 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.025777 B = 0.004783 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.963081 B = 5852.682312 C = 6512.474507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.073 0.927 4 C 0.076 3.924 5 O -0.584 6.584 6 N -0.689 5.689 7 C 0.111 3.889 8 C -0.040 4.040 9 C -0.173 4.173 10 C -0.075 4.075 11 C -0.239 4.239 12 C 0.117 3.883 13 O -0.248 6.248 14 C -0.400 4.400 15 H 0.082 0.918 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.265 1.265 21 H -0.267 1.267 22 C -0.173 4.173 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.391 0.609 29 H 0.345 0.655 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.285 0.715 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 10.299 22.002 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 H 0.091 0.909 4 C -0.002 4.002 5 O -0.391 6.391 6 N -0.322 5.322 7 C -0.017 4.017 8 C -0.041 4.041 9 C -0.192 4.192 10 C -0.093 4.093 11 C -0.258 4.258 12 C 0.068 3.932 13 O -0.156 6.156 14 C -0.476 4.476 15 H 0.099 0.901 16 C -0.187 4.187 17 N -0.564 5.564 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.189 1.189 21 H -0.192 1.192 22 C -0.193 4.193 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.240 0.760 29 H 0.165 0.835 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.520 10.125 21.127 23.477 hybrid contribution 0.547 -0.194 -0.096 0.588 sum 2.067 9.931 21.031 23.350 Atomic orbital electron populations 1.21663 0.94845 1.01580 1.01166 1.21758 0.96498 0.96080 0.88636 0.90933 1.22404 0.96650 0.84171 0.96989 1.86598 1.73154 1.27847 1.51548 1.60345 1.34219 1.33487 1.04172 1.20841 1.00915 0.92681 0.87313 1.19630 0.92956 0.96449 0.95053 1.21033 0.94727 1.04058 0.99349 1.21125 0.99503 0.95036 0.93668 1.21331 0.93170 1.07715 1.03620 1.19651 0.89714 0.92486 0.91310 1.83521 1.35634 1.65126 1.31309 1.20729 0.94665 1.37189 0.95046 0.90090 1.25244 1.04610 0.95207 0.93615 1.69725 1.38129 1.39010 1.09524 0.85250 0.77942 0.78681 0.79032 1.18917 1.18940 1.19203 1.20251 1.00231 1.03347 0.95445 0.93613 0.91196 0.93650 0.92591 0.91156 0.76025 0.83541 0.90715 0.91869 0.83209 0.83978 0.87467 0.90552 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.22 71.98 0.66 -2.07 16 2 C 0.08 1.42 3.02 44.92 0.14 1.55 16 3 H 0.07 1.02 7.80 -2.39 -0.02 1.00 16 4 C 0.08 1.05 6.60 71.98 0.47 1.53 16 5 O -0.58 -10.73 12.73 -148.98 -1.90 -12.63 16 6 N -0.69 -16.17 6.25 -495.56 -3.10 -19.27 16 7 C 0.11 2.67 5.61 85.56 0.48 3.15 16 8 C -0.04 -1.29 5.39 -19.88 -0.11 -1.40 16 9 C -0.17 -5.10 9.70 22.30 0.22 -4.88 16 10 C -0.08 -2.61 10.04 22.25 0.22 -2.38 16 11 C -0.24 -10.85 9.17 22.39 0.21 -10.64 16 12 C 0.12 5.77 6.65 22.58 0.15 5.92 16 13 O -0.25 -14.17 8.59 -22.73 -0.20 -14.37 16 14 C -0.40 -24.42 9.95 67.92 0.68 -23.74 16 15 H 0.08 5.15 5.44 -2.91 -0.02 5.13 16 16 C 0.01 0.69 5.49 84.83 0.47 1.15 16 17 N -0.92 -56.33 13.96 21.61 0.30 -56.03 16 18 Si 0.97 47.13 28.62 68.60 1.96 49.10 16 19 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 21 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 22 C -0.17 -7.15 9.65 22.39 0.22 -6.94 16 23 H 0.04 1.17 7.56 -2.39 -0.02 1.15 16 24 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.04 0.96 7.45 -2.39 -0.02 0.95 16 26 H 0.06 0.63 8.02 -2.39 -0.02 0.61 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.39 3.56 9.12 -74.06 -0.68 2.88 16 29 H 0.35 7.68 8.27 -89.70 -0.74 6.94 16 30 H 0.07 1.86 7.38 -2.38 -0.02 1.85 16 31 H 0.06 1.18 8.00 -2.39 -0.02 1.16 16 32 H 0.15 3.15 8.06 -2.92 -0.02 3.13 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.11 5.33 5.64 -2.91 -0.02 5.31 16 35 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -72.31 305.37 0.56 -71.75 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.32 Total: 20.21 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.80 Total: -38.76 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.79 Total: -75.30 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -2.09 Total: -27.00 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.96 Total: 49.10 kcal Total: -72.31 0.56 -71.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037258211.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.621 kcal (2) G-P(sol) polarization free energy of solvation -72.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds