Wall clock time and date at job start Mon Mar 30 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46782 * 2 1 4 4 O 1.42903 * 109.47014 * 180.02562 * 3 2 1 5 5 C 1.35898 * 116.99691 * 180.02562 * 4 3 2 6 6 C 1.38820 * 120.02336 * 359.97438 * 5 4 3 7 7 C 1.38189 * 120.08187 * 180.02562 * 6 5 4 8 8 C 1.38154 * 120.12203 * 0.23403 * 7 6 5 9 9 C 1.50703 * 119.97829 * 179.72316 * 8 7 6 10 10 N 1.46903 * 109.47026 * 259.99847 * 9 8 7 11 11 C 1.38896 * 120.04062 * 359.49268 * 8 7 6 12 12 O 1.35754 * 120.04031 * 180.25056 * 11 8 7 13 13 C 1.34826 * 116.99844 * 174.67119 * 12 11 8 14 14 H 1.08006 * 120.00200 * 5.06927 * 13 12 11 15 15 C 1.38656 * 120.00071 * 185.06786 * 13 12 11 16 16 N 1.31562 * 120.00038 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99883 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.46782 * 90.00054 * 17 15 13 19 19 H 1.48497 * 109.47137 * 210.00346 * 17 15 13 20 20 H 1.48499 * 109.47329 * 330.00475 * 17 15 13 21 21 C 1.38576 * 120.01868 * 180.02562 * 5 4 3 22 22 H 1.09000 * 109.47361 * 60.00144 * 1 2 3 23 23 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47024 * 300.00057 * 1 2 3 25 25 H 1.09003 * 109.47024 * 239.99943 * 2 1 3 26 26 H 1.09000 * 109.47361 * 119.99856 * 2 1 3 27 27 H 1.08995 * 109.47532 * 59.99884 * 3 2 1 28 28 H 1.09000 * 109.47055 * 300.00044 * 3 2 1 29 29 H 1.07999 * 119.96139 * 0.02809 * 6 5 4 30 30 H 1.08001 * 119.94239 * 179.97438 * 7 6 5 31 31 H 1.08996 * 109.47321 * 19.99616 * 9 8 7 32 32 H 1.08996 * 109.47106 * 140.00166 * 9 8 7 33 33 H 1.00903 * 111.00006 * 56.05268 * 10 9 8 34 34 H 1.00900 * 110.99852 * 179.97438 * 10 9 8 35 35 H 0.96997 * 119.99705 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.06002 * 359.95492 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0858 2.6535 -0.0001 6 6 3.3301 3.8180 0.0003 7 6 3.9561 5.0500 0.0003 8 6 5.3355 5.1268 -0.0051 9 6 6.0148 6.4720 -0.0115 10 7 6.4451 6.7968 -1.3780 11 6 6.0966 3.9649 0.0001 12 8 7.4521 4.0404 -0.0001 13 6 8.1297 2.8807 0.1167 14 1 7.5961 1.9416 0.1225 15 6 9.5116 2.8934 0.2294 16 7 10.1729 1.7618 0.3428 17 14 10.4346 4.5175 0.2186 18 1 10.5648 5.0219 1.6091 19 1 11.7857 4.3151 -0.3633 20 1 9.6868 5.5064 -0.5987 21 6 5.4697 2.7266 -0.0012 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.6766 1.9564 -0.8900 29 1 2.2517 3.7611 0.0008 30 1 3.3660 5.9545 0.0002 31 1 5.3179 7.2326 0.3404 32 1 6.8838 6.4433 0.6458 33 1 5.6665 6.7663 -2.0192 34 1 6.9034 7.6952 -1.4089 35 1 11.1396 1.7707 0.4213 36 1 6.0592 1.8217 -0.0017 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037709819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:03 Heat of formation + Delta-G solvation = -71.999011 kcal Electronic energy + Delta-G solvation = -18192.748498 eV Core-core repulsion = 15255.771805 eV Total energy + Delta-G solvation = -2936.976694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36019 -39.95267 -37.83274 -35.48027 -34.52912 -34.39483 -31.23542 -30.45152 -27.57560 -27.22359 -25.29254 -23.53685 -22.52487 -21.73753 -19.83617 -19.58301 -17.50272 -17.22370 -17.15445 -17.00751 -16.02665 -15.82540 -15.73371 -15.27137 -14.98802 -14.86399 -14.38374 -14.24453 -14.01023 -13.78851 -13.26503 -13.05756 -12.90577 -12.69305 -12.41805 -12.25238 -11.99805 -11.94796 -11.76885 -11.43582 -11.36992 -10.87496 -9.46248 -9.36854 -8.89752 -8.49134 -6.21412 0.52093 0.64892 1.33004 1.37758 1.59215 2.25122 2.32952 2.73358 3.05161 3.15041 3.87244 3.95637 3.99492 4.02132 4.14606 4.20996 4.32293 4.39537 4.48800 4.56975 4.69975 4.73847 4.81598 4.90666 4.99718 5.11645 5.18027 5.34381 5.38540 5.41589 5.54312 5.76829 5.81676 6.11078 6.40011 6.58260 6.78765 6.85411 7.59766 8.62674 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.006013 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.011746 B = 4655.345825 C = 5781.585711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.051 3.949 4 O -0.343 6.343 5 C 0.164 3.836 6 C -0.268 4.268 7 C -0.024 4.024 8 C -0.195 4.195 9 C 0.128 3.872 10 N -0.858 5.858 11 C 0.179 3.821 12 O -0.215 6.215 13 C -0.401 4.401 14 H 0.072 0.928 15 C 0.012 3.988 16 N -0.925 5.925 17 Si 0.971 3.029 18 H -0.266 1.266 19 H -0.271 1.271 20 H -0.252 1.252 21 C -0.289 4.289 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.346 0.654 34 H 0.349 0.651 35 H 0.284 0.716 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 6.887 -0.853 19.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.023 4.023 4 O -0.257 6.257 5 C 0.119 3.881 6 C -0.287 4.287 7 C -0.043 4.043 8 C -0.197 4.197 9 C -0.002 4.002 10 N -0.390 5.390 11 C 0.127 3.873 12 O -0.120 6.120 13 C -0.477 4.477 14 H 0.090 0.910 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.196 1.196 20 H -0.175 1.175 21 C -0.309 4.309 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.173 0.827 30 H 0.183 0.817 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.094 0.906 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.481 6.129 -0.788 18.541 hybrid contribution 0.219 0.372 0.138 0.453 sum -17.262 6.501 -0.651 18.457 Atomic orbital electron populations 1.21657 0.91967 1.03287 1.02945 1.21543 0.97771 0.93928 1.03016 1.23161 0.76672 0.99949 1.02505 1.86031 1.23488 1.27675 1.88511 1.18739 0.90658 0.85072 0.93664 1.21150 1.00516 0.91100 1.15955 1.20869 0.91626 0.98175 0.93589 1.19237 0.93460 0.92833 1.14124 1.20264 0.97620 0.91693 0.90626 1.58495 1.34665 1.38218 1.07626 1.19074 0.83137 0.93174 0.91894 1.83608 1.14518 1.32389 1.81503 1.20713 0.91023 0.84098 1.51866 0.91023 1.25302 0.96027 1.02125 0.95167 1.69751 1.09387 1.27847 1.49536 0.85194 0.77361 0.78699 0.79446 1.19151 1.19583 1.17546 1.20397 0.93306 0.98056 1.19181 0.91541 0.90896 0.91567 0.91664 0.91692 0.90810 0.90797 0.82724 0.81708 0.91887 0.93107 0.84036 0.83722 0.90606 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -2.54 6.30 30.60 0.19 -2.34 16 3 C 0.05 1.24 4.74 71.98 0.34 1.59 16 4 O -0.34 -12.56 10.13 -92.40 -0.94 -13.50 16 5 C 0.16 6.54 6.68 22.49 0.15 6.69 16 6 C -0.27 -8.30 9.04 22.40 0.20 -8.10 16 7 C -0.02 -0.72 9.66 22.24 0.21 -0.50 16 8 C -0.19 -7.38 5.41 -19.73 -0.11 -7.49 16 9 C 0.13 4.16 6.58 85.56 0.56 4.72 16 10 N -0.86 -26.46 9.61 -190.00 -1.83 -28.29 16 11 C 0.18 8.74 6.62 22.56 0.15 8.89 16 12 O -0.21 -12.00 7.81 -22.75 -0.18 -12.18 16 13 C -0.40 -24.78 9.95 67.92 0.68 -24.10 16 14 H 0.07 4.77 5.44 -2.91 -0.02 4.75 16 15 C 0.01 0.73 5.49 84.83 0.47 1.19 16 16 N -0.92 -57.43 13.96 21.61 0.30 -57.13 16 17 Si 0.97 46.98 28.62 68.60 1.96 48.95 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.25 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.29 -14.23 9.10 22.48 0.20 -14.03 16 22 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 28 H 0.07 1.55 7.66 -2.39 -0.02 1.53 16 29 H 0.16 3.52 6.29 -2.91 -0.02 3.50 16 30 H 0.17 3.29 8.03 -2.91 -0.02 3.27 16 31 H 0.06 1.52 8.00 -2.39 -0.02 1.50 16 32 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 33 H 0.35 9.14 8.99 -89.69 -0.81 8.33 16 34 H 0.35 8.74 9.08 -89.69 -0.81 7.92 16 35 H 0.28 16.15 8.31 -92.71 -0.77 15.38 16 36 H 0.10 5.67 5.64 -2.91 -0.02 5.65 16 Total: -1.00 -73.70 304.59 2.58 -71.12 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.52 Total: 25.69 kcal Atomic # 6 Polarization: -38.44 SS G_CDS: 3.77 Total: -34.67 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.52 Total: -85.42 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -1.11 Total: -25.67 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.96 Total: 48.95 kcal Total: -73.70 2.58 -71.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037709819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal (2) G-P(sol) polarization free energy of solvation -73.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds