Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35942 * 116.99600 * 2 1 4 4 C 1.38786 * 119.98946 * 0.02562 * 3 2 1 5 5 C 1.38027 * 120.01669 * 179.97438 * 4 3 2 6 6 C 1.38909 * 119.98407 * 359.74337 * 5 4 3 7 7 O 1.35789 * 120.01047 * 180.25308 * 6 5 4 8 8 C 1.34812 * 117.00230 * 354.38694 * 7 6 5 9 9 H 1.07997 * 120.00242 * 5.07013 * 8 7 6 10 10 C 1.38638 * 120.00091 * 185.06361 * 8 7 6 11 11 N 1.31570 * 119.99655 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00165 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46815 * 60.00501 * 12 10 8 14 14 H 1.48501 * 109.47103 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47311 * 300.00130 * 12 10 8 16 16 C 1.38862 * 119.96953 * 0.50539 * 6 5 4 17 17 C 1.50700 * 120.00220 * 179.77031 * 16 6 5 18 18 C 1.53004 * 109.47172 * 84.72366 * 17 16 6 19 19 H 1.09004 * 109.46692 * 55.00247 * 18 17 16 20 20 C 1.53002 * 109.46982 * 174.99765 * 18 17 16 21 21 N 1.46893 * 109.47093 * 294.99872 * 18 17 16 22 22 C 1.38066 * 119.98904 * 359.49422 * 16 6 5 23 23 H 1.09001 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47528 * 300.00061 * 1 2 3 25 25 H 1.09000 * 109.46772 * 60.00533 * 1 2 3 26 26 H 1.08006 * 119.99258 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.00700 * 179.97438 * 5 4 3 28 28 H 0.97006 * 120.00303 * 179.97438 * 11 10 8 29 29 H 1.09006 * 109.47424 * 324.72454 * 17 16 6 30 30 H 1.09005 * 109.47082 * 204.72324 * 17 16 6 31 31 H 1.08994 * 109.46824 * 59.99913 * 20 18 17 32 32 H 1.09005 * 109.47078 * 300.00090 * 20 18 17 33 33 H 1.08992 * 109.46852 * 180.02562 * 20 18 17 34 34 H 1.00905 * 110.99809 * 56.04958 * 21 18 17 35 35 H 1.00904 * 110.99743 * 179.97438 * 21 18 17 36 36 H 1.08001 * 119.99240 * 180.22403 * 22 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2899 2.3751 0.0005 5 6 1.9159 3.6052 0.0011 6 6 3.3030 3.6783 0.0065 7 8 3.9194 4.8882 0.0122 8 6 3.1325 5.9766 -0.1052 9 1 2.0581 5.8675 -0.1157 10 6 3.7025 7.2358 -0.2122 11 7 5.0114 7.3686 -0.1998 12 14 2.6122 8.7437 -0.3756 13 1 1.7312 8.8489 0.8153 14 1 3.4598 9.9593 -0.4724 15 1 1.7789 8.6220 -1.5986 16 6 4.0590 2.5135 0.0007 17 6 5.5640 2.5920 0.0013 18 6 6.0662 2.7438 1.4386 19 1 5.6731 1.9304 2.0485 20 6 7.5955 2.6982 1.4519 21 7 5.6099 4.0293 1.9835 22 6 3.4317 1.2836 0.0002 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.2113 2.3181 0.0005 27 1 1.3273 4.5107 0.0011 28 1 5.4103 8.2496 -0.2751 29 1 5.8833 3.4518 -0.5878 30 1 5.9755 1.6808 -0.4331 31 1 7.9885 3.5114 0.8419 32 1 7.9341 1.7442 1.0475 33 1 7.9532 2.8058 2.4758 34 1 4.6057 4.1103 1.9261 35 1 5.9286 4.1532 2.9328 36 1 4.0197 0.3777 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037722617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = -43.268818 kcal Electronic energy + Delta-G solvation = -18789.198184 eV Core-core repulsion = 15853.467325 eV Total energy + Delta-G solvation = -2935.730859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66836 -38.14255 -36.18455 -35.00810 -32.12338 -31.00943 -28.95396 -28.45645 -26.58254 -25.70453 -25.14295 -21.73020 -20.81824 -19.54938 -17.93538 -17.21148 -16.49448 -15.51295 -15.31491 -15.01032 -14.77633 -14.46137 -13.95919 -13.57596 -13.23744 -13.03206 -12.79305 -12.24648 -11.95515 -11.68184 -11.58919 -11.45613 -11.33000 -11.07271 -10.98853 -10.80377 -10.58437 -10.49197 -10.28049 -9.92771 -9.20608 -8.65308 -8.12692 -7.68227 -6.81237 -6.31043 -3.89337 2.05470 2.38833 3.17397 3.18552 3.20869 3.83908 4.03445 4.50464 5.16174 5.21504 5.29146 5.33687 5.38787 5.41958 5.59584 5.63459 5.70475 5.72437 5.93510 5.97590 6.15907 6.24180 6.34007 6.42069 6.50660 6.61051 6.77022 6.81724 7.06580 7.18368 7.26088 7.41271 7.56874 8.04699 8.08475 8.09999 8.38099 9.11732 9.82727 10.83689 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.016530 B = 0.008320 C = 0.005766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.461779 B = 3364.647588 C = 4855.051879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.024 3.976 4 C -0.155 4.155 5 C -0.205 4.205 6 C 0.127 3.873 7 O -0.148 6.148 8 C -0.398 4.398 9 H 0.085 0.915 10 C 0.046 3.954 11 N -0.843 5.843 12 Si 0.932 3.068 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.273 1.273 16 C -0.129 4.129 17 C -0.058 4.058 18 C 0.098 3.902 19 H 0.019 0.981 20 C -0.142 4.142 21 N -0.822 5.822 22 C -0.100 4.100 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.130 0.870 28 H 0.267 0.733 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.351 0.649 35 H 0.322 0.678 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -9.045 2.079 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C -0.019 4.019 4 C -0.174 4.174 5 C -0.225 4.225 6 C 0.073 3.927 7 O -0.050 6.050 8 C -0.474 4.474 9 H 0.102 0.898 10 C -0.160 4.160 11 N -0.476 5.476 12 Si 0.757 3.243 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.198 1.198 16 C -0.130 4.130 17 C -0.095 4.095 18 C -0.013 4.013 19 H 0.037 0.963 20 C -0.200 4.200 21 N -0.356 5.356 22 C -0.119 4.119 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.129 0.871 27 H 0.147 0.853 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.168 0.832 35 H 0.133 0.867 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.514 -8.626 1.486 9.106 hybrid contribution -1.654 0.357 0.605 1.797 sum -4.167 -8.268 2.091 9.492 Atomic orbital electron populations 1.22819 0.80083 1.02497 1.00723 1.85945 1.19917 1.27761 1.90788 1.18531 0.91993 0.83454 1.07960 1.20851 0.98551 0.92209 1.05782 1.20994 0.94678 0.97367 1.09460 1.19132 0.90425 0.87628 0.95551 1.84135 1.33800 1.09377 1.77717 1.21184 0.90173 0.83241 1.52850 0.89764 1.25161 0.96193 0.97861 0.96789 1.70085 1.08951 1.23931 1.44672 0.85937 0.79159 0.80235 0.78949 1.19789 1.20424 1.19818 1.18789 0.95313 0.89955 1.08958 1.20380 0.90508 1.02114 0.96541 1.21206 0.94440 0.90539 0.95147 0.96332 1.21804 0.95517 1.01375 1.01271 1.58657 1.19511 1.32710 1.24675 1.19827 0.90913 0.96662 1.04506 0.89382 0.93502 0.93459 0.87057 0.85255 0.92313 0.89402 0.92108 0.91592 0.93104 0.93514 0.83237 0.86721 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.33 -5.58 10.50 -19.56 -0.21 -5.78 16 3 C 0.02 0.46 6.69 -39.19 -0.26 0.20 16 4 C -0.16 -2.94 9.03 -39.46 -0.36 -3.29 16 5 C -0.21 -4.42 9.16 -39.41 -0.36 -4.79 16 6 C 0.13 2.94 5.45 -39.10 -0.21 2.72 16 7 O -0.15 -3.91 6.98 -0.02 0.00 -3.91 16 8 C -0.40 -10.71 9.49 30.88 0.29 -10.42 16 9 H 0.08 2.13 5.20 -52.49 -0.27 1.85 16 10 C 0.05 1.23 5.49 -17.52 -0.10 1.13 16 11 N -0.84 -24.05 13.67 55.48 0.76 -23.29 16 12 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 C -0.13 -2.67 4.88 -104.45 -0.51 -3.18 16 17 C -0.06 -1.11 4.80 -27.88 -0.13 -1.25 16 18 C 0.10 1.76 3.42 -67.71 -0.23 1.53 16 19 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 20 C -0.14 -2.18 9.49 37.16 0.35 -1.83 16 21 N -0.82 -16.65 8.57 -4.67 -0.04 -16.69 16 22 C -0.10 -1.92 9.61 -39.45 -0.38 -2.30 16 23 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 25 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 26 H 0.11 1.79 6.29 -52.48 -0.33 1.46 16 27 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 29 H 0.09 1.96 7.70 -51.93 -0.40 1.56 16 30 H 0.06 1.00 8.05 -51.93 -0.42 0.58 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.35 7.79 5.84 -39.29 -0.23 7.56 16 35 H 0.32 5.72 9.04 -39.29 -0.36 5.36 16 36 H 0.12 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -29.64 298.05 -5.69 -35.33 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -4.77 Total: 14.58 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -0.91 Total: -20.06 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.72 Total: -39.98 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.21 Total: -9.69 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.64 -5.69 -35.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037722617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.939 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds