Wall clock time and date at job start Mon Mar 30 2020 04:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35952 * 116.99799 * 2 1 4 4 C 1.38573 * 120.08316 * 0.02562 * 3 2 1 5 5 C 1.38232 * 120.00811 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.90453 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46922 * 89.99947 * 6 5 4 8 8 H 1.09004 * 109.46682 * 55.00042 * 7 6 5 9 9 C 1.52997 * 109.46902 * 174.99796 * 7 6 5 10 10 N 1.46892 * 109.47343 * 295.00157 * 7 6 5 11 11 C 1.38318 * 120.18813 * 0.02562 * 5 4 3 12 12 C 1.38162 * 120.17076 * 359.97048 * 11 5 4 13 13 C 1.38753 * 119.98191 * 359.77157 * 12 11 5 14 14 O 1.35798 * 120.09197 * 180.24768 * 13 12 11 15 15 C 1.34811 * 116.99869 * 354.40550 * 14 13 12 16 16 H 1.07999 * 119.99858 * 5.06225 * 15 14 13 17 17 C 1.38641 * 120.00267 * 185.05916 * 15 14 13 18 18 N 1.31568 * 120.00154 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.46993 * 89.99640 * 19 17 15 21 21 H 1.48495 * 109.46881 * 209.99758 * 19 17 15 22 22 H 1.48498 * 109.47070 * 329.99763 * 19 17 15 23 23 H 1.09002 * 109.46613 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47238 * 60.00372 * 1 2 3 25 25 H 1.09003 * 109.47083 * 299.99134 * 1 2 3 26 26 H 1.07997 * 119.99061 * 359.97438 * 4 3 2 27 27 H 1.08997 * 109.47416 * 209.99784 * 6 5 4 28 28 H 1.08998 * 109.47233 * 330.00039 * 6 5 4 29 29 H 1.09004 * 109.47252 * 60.00594 * 9 7 6 30 30 H 1.09007 * 109.47147 * 180.02562 * 9 7 6 31 31 H 1.09000 * 109.47775 * 300.00380 * 9 7 6 32 32 H 1.00898 * 111.00477 * 179.97438 * 10 7 6 33 33 H 1.00902 * 111.00007 * 303.95445 * 10 7 6 34 34 H 1.08002 * 119.91506 * 180.02562 * 11 5 4 35 35 H 1.07994 * 120.00208 * 180.02562 * 12 11 5 36 36 H 0.96995 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2931 2.3746 0.0005 5 6 1.9222 3.6055 0.0000 6 6 1.1009 4.8691 0.0000 7 6 0.8236 5.2970 1.4426 8 1 1.7665 5.3914 1.9812 9 6 0.0981 6.6440 1.4443 10 7 -0.0168 4.2873 2.0999 11 6 3.3034 3.6806 -0.0016 12 6 4.0616 2.5257 -0.0021 13 6 3.4375 1.2864 0.0039 14 8 4.1806 0.1498 0.0085 15 6 5.5160 0.2912 -0.1100 16 1 5.9557 1.2776 -0.1207 17 6 6.3250 -0.8295 -0.2182 18 7 7.6282 -0.6914 -0.3344 19 14 5.5643 -2.5356 -0.2003 20 1 5.2350 -2.9453 -1.5892 21 1 6.5285 -3.5013 0.3853 22 1 4.3248 -2.5164 0.6171 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 0.5137 0.8901 26 1 0.2146 2.3194 0.0005 27 1 1.6489 5.6586 -0.5142 28 1 0.1565 4.6886 -0.5134 29 1 -0.8449 6.5495 0.9057 30 1 -0.0992 6.9491 2.4721 31 1 0.7216 7.3933 0.9566 32 1 -0.2139 4.5469 3.0548 33 1 -0.8697 4.1346 1.5829 34 1 3.7903 4.6446 -0.0016 35 1 5.1398 2.5875 -0.0029 36 1 8.1942 -1.4756 -0.4097 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037727137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:12 Heat of formation + Delta-G solvation = -45.177155 kcal Electronic energy + Delta-G solvation = -18426.277902 eV Core-core repulsion = 15490.464291 eV Total energy + Delta-G solvation = -2935.813611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67428 -37.53731 -37.38367 -35.38111 -32.29253 -30.56208 -29.45826 -28.83666 -27.14823 -25.88327 -24.55445 -21.63504 -21.19785 -20.19285 -17.78689 -17.58454 -16.35344 -16.12643 -15.25552 -15.14666 -14.61672 -14.36182 -14.05910 -13.71182 -13.48271 -13.21024 -13.18768 -12.74224 -12.34770 -12.18009 -12.05347 -11.62474 -11.43587 -11.17316 -10.98852 -10.81840 -10.73720 -10.34625 -10.14657 -10.10221 -9.34050 -8.74069 -8.63571 -7.79835 -6.91805 -6.30824 -3.94227 2.21712 2.30753 3.32215 3.36317 3.55913 4.00205 4.37066 4.48384 4.54569 4.89932 4.94236 5.03814 5.19672 5.26804 5.39432 5.46754 5.55467 5.59219 5.72041 5.75231 5.80733 5.88661 5.92060 5.96865 6.16821 6.37690 6.40777 6.67401 6.98637 7.16976 7.21403 7.40764 7.45094 7.62279 7.76744 8.05661 8.25185 9.05626 9.71274 10.76930 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.029927 B = 0.005858 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.399414 B = 4778.507550 C = 5487.990509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.053 3.947 4 C -0.138 4.138 5 C -0.123 4.123 6 C -0.058 4.058 7 C 0.091 3.909 8 H 0.081 0.919 9 C -0.188 4.188 10 N -0.835 5.835 11 C -0.104 4.104 12 C -0.196 4.196 13 C 0.136 3.864 14 O -0.209 6.209 15 C -0.385 4.385 16 H 0.105 0.895 17 C 0.063 3.937 18 N -0.884 5.884 19 Si 0.903 3.097 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.256 1.256 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.336 0.664 33 H 0.334 0.666 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 9.962 1.966 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.225 6.225 3 C 0.009 3.991 4 C -0.157 4.157 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.021 4.021 8 H 0.100 0.900 9 C -0.247 4.247 10 N -0.363 5.363 11 C -0.123 4.123 12 C -0.215 4.215 13 C 0.085 3.915 14 O -0.115 6.115 15 C -0.461 4.461 16 H 0.122 0.878 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.729 3.271 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.180 1.180 23 H 0.106 0.894 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.155 0.845 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.830 8.908 1.833 17.396 hybrid contribution -0.993 0.344 0.119 1.058 sum -15.823 9.252 1.953 18.433 Atomic orbital electron populations 1.22866 0.80345 1.02655 1.00463 1.86163 1.19528 1.26836 1.89941 1.18212 0.89324 0.84538 1.07058 1.20438 0.98228 0.90884 1.06165 1.18902 0.93035 0.93221 1.07214 1.20425 0.98910 0.95433 0.94802 1.21482 0.96862 0.88033 0.95699 0.90037 1.22688 1.01053 0.99508 1.01451 1.58799 1.22802 1.48822 1.05922 1.20555 0.92858 0.97186 1.01676 1.21005 1.00888 0.90811 1.08841 1.18394 0.87748 0.87158 0.98243 1.83657 1.19882 1.27136 1.80840 1.20775 0.77560 0.96778 1.50980 0.87773 1.24424 0.94499 0.99333 0.95728 1.69658 1.02918 1.31455 1.48186 0.86193 0.79673 0.81963 0.79269 1.19991 1.21011 1.17989 0.89377 0.93678 0.93253 0.86498 0.91364 0.92216 0.92951 0.92979 0.92126 0.85180 0.85413 0.87431 0.84529 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.31 -6.56 10.28 -34.03 -0.35 -6.91 16 3 C 0.05 1.16 6.70 -39.05 -0.26 0.90 16 4 C -0.14 -2.46 8.29 -39.46 -0.33 -2.78 16 5 C -0.12 -2.05 4.95 -104.59 -0.52 -2.57 16 6 C -0.06 -0.72 4.96 -27.88 -0.14 -0.86 16 7 C 0.09 0.99 3.35 -67.72 -0.23 0.77 16 8 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 9 C -0.19 -1.59 9.48 37.16 0.35 -1.23 16 10 N -0.83 -8.94 8.63 -4.67 -0.04 -8.98 16 11 C -0.10 -1.93 9.69 -39.58 -0.38 -2.31 16 12 C -0.20 -4.38 9.16 -39.42 -0.36 -4.74 16 13 C 0.14 3.37 6.66 -38.98 -0.26 3.11 16 14 O -0.21 -5.92 8.37 -14.48 -0.12 -6.04 16 15 C -0.39 -11.31 9.95 30.88 0.31 -11.00 16 16 H 0.10 3.08 5.44 -52.49 -0.29 2.80 16 17 C 0.06 1.83 5.49 -17.52 -0.10 1.73 16 18 N -0.88 -26.27 13.96 55.48 0.77 -25.50 16 19 Si 0.90 22.87 28.62 -169.99 -4.86 18.00 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.26 -6.64 7.11 56.52 0.40 -6.24 16 23 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.04 0.58 7.66 -51.93 -0.40 0.18 16 25 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 26 H 0.12 1.76 6.30 -52.49 -0.33 1.43 16 27 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 28 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.34 3.05 9.04 -39.29 -0.36 2.70 16 33 H 0.33 3.08 8.98 -39.29 -0.35 2.73 16 34 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.14 3.17 5.64 -52.49 -0.30 2.88 16 36 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -32.19 303.66 -5.87 -38.06 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.93 Total: 4.32 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -0.92 Total: -17.53 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.73 Total: -34.48 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.47 Total: -12.95 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.86 Total: 18.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.19 -5.87 -38.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037727137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.115 kcal (2) G-P(sol) polarization free energy of solvation -32.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds