Wall clock time and date at job start Mon Mar 30 2020 04:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35949 * 116.99910 * 2 1 4 4 C 1.38562 * 120.08433 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00822 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.18745 * 359.97438 * 5 4 3 7 7 C 1.38157 * 120.16687 * 0.26046 * 6 5 4 8 8 C 1.50700 * 120.00588 * 179.72074 * 7 6 5 9 9 C 1.52998 * 109.47393 * 264.99937 * 8 7 6 10 10 H 1.09005 * 109.46917 * 304.99799 * 9 8 7 11 11 C 1.53000 * 109.47186 * 185.00213 * 9 8 7 12 12 N 1.46901 * 109.47087 * 64.99613 * 9 8 7 13 13 C 1.38751 * 119.98690 * 359.48665 * 7 6 5 14 14 O 1.35805 * 120.09325 * 180.26050 * 13 7 6 15 15 C 1.34800 * 116.99746 * 270.25231 * 14 13 7 16 16 H 1.07999 * 120.00381 * 359.97438 * 15 14 13 17 17 C 1.38644 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31569 * 120.00027 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47305 * 59.99853 * 19 17 15 21 21 H 1.48504 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46697 * 299.99642 * 19 17 15 23 23 H 1.08992 * 109.46974 * 300.00419 * 1 2 3 24 24 H 1.08996 * 109.46688 * 60.00438 * 1 2 3 25 25 H 1.09003 * 109.46904 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99581 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.90375 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.91303 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47165 * 24.99880 * 8 7 6 30 30 H 1.09001 * 109.47613 * 144.99337 * 8 7 6 31 31 H 1.09004 * 109.46517 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.46928 * 299.99124 * 11 9 8 33 33 H 1.08991 * 109.47535 * 59.99851 * 11 9 8 34 34 H 1.00904 * 110.99662 * 180.02562 * 12 9 8 35 35 H 1.00897 * 111.00191 * 303.95737 * 12 9 8 36 36 H 0.97003 * 120.00262 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2933 2.3745 -0.0005 5 6 1.9225 3.6054 0.0000 6 6 3.3036 3.6805 0.0016 7 6 4.0617 2.5255 -0.0027 8 6 5.5663 2.6116 -0.0073 9 6 6.0781 2.5176 -1.4461 10 1 5.6934 1.6093 -1.9100 11 6 7.6077 2.4794 -1.4418 12 7 5.6196 3.6879 -2.2064 13 6 3.4376 1.2863 0.0020 14 8 4.1807 0.1496 0.0031 15 6 4.5170 -0.3628 -1.1975 16 1 4.1958 0.1291 -2.1038 17 6 5.2751 -1.5214 -1.2690 18 7 5.6668 -2.1205 -0.1650 19 14 5.7417 -2.2311 -2.9328 20 1 6.5389 -1.2335 -3.6906 21 1 6.5470 -3.4635 -2.7370 22 1 4.5096 -2.5612 -3.6932 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2147 2.3195 -0.0014 27 1 1.3339 4.5109 -0.0008 28 1 3.7906 4.6445 0.0016 29 1 5.8772 3.5615 0.4276 30 1 5.9790 1.7910 0.5795 31 1 7.9723 2.4129 -2.4669 32 1 7.9924 3.3877 -0.9779 33 1 7.9479 1.6111 -0.8777 34 1 5.9446 3.6491 -3.1608 35 1 4.6147 3.7717 -2.1700 36 1 6.1975 -2.9309 -0.2150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037727702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:48 Heat of formation + Delta-G solvation = -45.136543 kcal Electronic energy + Delta-G solvation = -19212.764363 eV Core-core repulsion = 16276.952513 eV Total energy + Delta-G solvation = -2935.811850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78427 -37.63389 -36.11729 -35.39246 -31.91760 -30.67217 -29.05999 -28.64608 -26.85601 -25.75110 -24.61260 -21.61977 -21.02134 -19.57127 -17.83995 -17.18817 -16.18144 -15.95531 -15.24336 -15.07822 -14.78042 -14.48774 -14.02009 -13.76792 -13.43478 -13.11990 -12.52316 -11.94191 -11.79149 -11.69635 -11.40828 -11.35149 -11.18827 -11.09627 -10.88165 -10.76013 -10.49331 -10.39031 -10.32075 -9.87953 -9.54757 -8.20236 -8.13601 -7.89186 -7.32626 -6.01653 -3.68219 1.88869 2.04730 3.25750 3.29097 3.31215 3.88817 4.15111 4.41477 5.06818 5.24181 5.27594 5.32979 5.42933 5.47641 5.48892 5.66213 5.78113 5.85233 5.88377 5.99501 6.05136 6.19174 6.32682 6.43677 6.62983 6.69018 6.75413 6.87942 6.92127 6.99814 7.20473 7.37044 7.46148 7.67269 7.90384 8.06353 8.34937 9.41105 10.15894 11.17868 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.011249 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.890128 B = 2488.540425 C = 3834.233584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.291 6.291 3 C 0.094 3.906 4 C -0.211 4.211 5 C -0.114 4.114 6 C -0.143 4.143 7 C -0.082 4.082 8 C -0.059 4.059 9 C 0.082 3.918 10 H 0.066 0.934 11 C -0.138 4.138 12 N -0.850 5.850 13 C 0.112 3.888 14 O -0.224 6.224 15 C -0.350 4.350 16 H 0.061 0.939 17 C 0.032 3.968 18 N -0.881 5.881 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.277 1.277 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.331 0.669 35 H 0.338 0.662 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 9.132 -2.132 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.048 3.952 4 C -0.229 4.229 5 C -0.132 4.132 6 C -0.162 4.162 7 C -0.082 4.082 8 C -0.096 4.096 9 C -0.028 4.028 10 H 0.084 0.916 11 C -0.196 4.196 12 N -0.380 5.380 13 C 0.066 3.934 14 O -0.136 6.136 15 C -0.427 4.427 16 H 0.079 0.921 17 C -0.167 4.167 18 N -0.522 5.522 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.203 1.203 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.111 0.889 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.582 9.071 -1.377 10.256 hybrid contribution -0.831 -0.865 -1.549 1.959 sum -5.413 8.206 -2.926 10.256 Atomic orbital electron populations 1.22961 0.80428 1.03188 1.00262 1.86344 1.19366 1.26276 1.88374 1.19889 0.92571 0.84290 0.98465 1.21015 0.99136 0.92375 1.10419 1.20682 0.94503 0.96266 1.01763 1.20799 0.93277 0.97509 1.04566 1.20185 0.96441 0.91662 0.99957 1.20411 0.90278 1.02220 0.96712 1.21441 0.94898 0.92492 0.93968 0.91566 1.21736 0.95132 1.01646 1.01080 1.58948 1.17254 1.44478 1.17355 1.18404 0.86802 0.88887 0.99321 1.83916 1.66693 1.34152 1.28865 1.20632 1.32423 1.08035 0.81561 0.92104 1.24897 0.97914 0.96133 0.97799 1.70005 1.37178 1.19091 1.25937 0.86112 0.78538 0.78741 0.81874 1.20214 1.20677 1.20308 0.93476 0.93502 0.88855 0.86375 0.86750 0.86223 0.91625 0.89482 0.93568 0.92838 0.91816 0.85824 0.84898 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.29 -6.39 10.28 -34.01 -0.35 -6.74 16 3 C 0.09 2.03 6.70 -39.05 -0.26 1.76 16 4 C -0.21 -3.65 9.04 -39.46 -0.36 -4.01 16 5 C -0.11 -1.80 10.04 -39.55 -0.40 -2.20 16 6 C -0.14 -2.42 8.51 -39.58 -0.34 -2.76 16 7 C -0.08 -1.65 4.60 -104.46 -0.48 -2.13 16 8 C -0.06 -1.14 4.72 -27.88 -0.13 -1.27 16 9 C 0.08 1.53 3.42 -67.71 -0.23 1.30 16 10 H 0.07 1.46 5.63 -51.93 -0.29 1.17 16 11 C -0.14 -2.33 9.49 37.16 0.35 -1.98 16 12 N -0.85 -13.46 9.25 -4.67 -0.04 -13.50 16 13 C 0.11 2.67 5.58 -38.98 -0.22 2.45 16 14 O -0.22 -6.37 8.61 -14.47 -0.12 -6.49 16 15 C -0.35 -9.89 7.94 30.88 0.25 -9.64 16 16 H 0.06 1.68 7.33 -52.49 -0.38 1.29 16 17 C 0.03 0.91 5.49 -17.51 -0.10 0.82 16 18 N -0.88 -26.82 13.67 55.48 0.76 -26.06 16 19 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 25 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.12 1.70 6.30 -52.49 -0.33 1.37 16 27 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.09 1.93 7.68 -51.93 -0.40 1.53 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.33 4.69 9.04 -39.29 -0.36 4.34 16 35 H 0.34 5.38 7.15 -39.29 -0.28 5.10 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 301.52 15.07 4.54 4.54 Total: -1.00 -32.15 301.52 -6.09 -38.24 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.93 Total: 9.58 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.92 Total: -16.25 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.72 Total: -39.56 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.47 Total: -13.23 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.15 -6.09 -38.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037727702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.897 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds