Wall clock time and date at job start Mon Mar 30 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35949 * 116.99910 * 2 1 4 4 C 1.38562 * 120.08433 * 359.97438 * 3 2 1 5 5 C 1.38237 * 120.00822 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.18745 * 359.97438 * 5 4 3 7 7 C 1.38157 * 120.16687 * 0.26046 * 6 5 4 8 8 C 1.50700 * 120.00588 * 179.72074 * 7 6 5 9 9 C 1.52998 * 109.47393 * 264.99937 * 8 7 6 10 10 H 1.09005 * 109.46917 * 304.99799 * 9 8 7 11 11 C 1.53000 * 109.47186 * 185.00213 * 9 8 7 12 12 N 1.46901 * 109.47087 * 64.99613 * 9 8 7 13 13 C 1.38751 * 119.98690 * 359.48665 * 7 6 5 14 14 O 1.35805 * 120.09325 * 180.26050 * 13 7 6 15 15 C 1.34800 * 116.99746 * 270.25231 * 14 13 7 16 16 H 1.07999 * 120.00381 * 359.97438 * 15 14 13 17 17 C 1.38644 * 119.99854 * 179.97438 * 15 14 13 18 18 N 1.31569 * 120.00027 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00096 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47305 * 59.99853 * 19 17 15 21 21 H 1.48504 * 109.47051 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46697 * 299.99642 * 19 17 15 23 23 H 1.08992 * 109.46974 * 300.00419 * 1 2 3 24 24 H 1.08996 * 109.46688 * 60.00438 * 1 2 3 25 25 H 1.09003 * 109.46904 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99581 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.90375 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.91303 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47165 * 24.99880 * 8 7 6 30 30 H 1.09001 * 109.47613 * 144.99337 * 8 7 6 31 31 H 1.09004 * 109.46517 * 180.02562 * 11 9 8 32 32 H 1.09001 * 109.46928 * 299.99124 * 11 9 8 33 33 H 1.08991 * 109.47535 * 59.99851 * 11 9 8 34 34 H 1.00904 * 110.99662 * 180.02562 * 12 9 8 35 35 H 1.00897 * 111.00191 * 303.95737 * 12 9 8 36 36 H 0.97003 * 120.00262 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2933 2.3745 -0.0005 5 6 1.9225 3.6054 0.0000 6 6 3.3036 3.6805 0.0016 7 6 4.0617 2.5255 -0.0027 8 6 5.5663 2.6116 -0.0073 9 6 6.0781 2.5176 -1.4461 10 1 5.6934 1.6093 -1.9100 11 6 7.6077 2.4794 -1.4418 12 7 5.6196 3.6879 -2.2064 13 6 3.4376 1.2863 0.0020 14 8 4.1807 0.1496 0.0031 15 6 4.5170 -0.3628 -1.1975 16 1 4.1958 0.1291 -2.1038 17 6 5.2751 -1.5214 -1.2690 18 7 5.6668 -2.1205 -0.1650 19 14 5.7417 -2.2311 -2.9328 20 1 6.5389 -1.2335 -3.6906 21 1 6.5470 -3.4635 -2.7370 22 1 4.5096 -2.5612 -3.6932 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2147 2.3195 -0.0014 27 1 1.3339 4.5109 -0.0008 28 1 3.7906 4.6445 0.0016 29 1 5.8772 3.5615 0.4276 30 1 5.9790 1.7910 0.5795 31 1 7.9723 2.4129 -2.4669 32 1 7.9924 3.3877 -0.9779 33 1 7.9479 1.6111 -0.8777 34 1 5.9446 3.6491 -3.1608 35 1 4.6147 3.7717 -2.1700 36 1 6.1975 -2.9309 -0.2150 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037727702.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:47 Heat of formation + Delta-G solvation = -68.055523 kcal Electronic energy + Delta-G solvation = -19213.758204 eV Core-core repulsion = 16276.952513 eV Total energy + Delta-G solvation = -2936.805691 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31909 -39.19166 -37.89442 -36.81756 -33.99978 -32.14798 -30.55682 -30.02162 -28.15548 -27.36878 -26.56703 -23.15114 -22.46123 -21.10810 -19.76504 -18.79262 -17.92265 -17.47057 -16.67930 -16.44918 -16.27088 -16.17665 -15.57633 -15.32356 -14.93720 -14.84974 -13.93427 -13.53439 -13.45412 -13.22160 -13.03538 -12.84953 -12.74150 -12.54813 -12.43234 -12.24725 -12.23642 -11.98676 -11.72708 -11.66442 -11.33937 -10.25888 -9.59895 -9.35795 -8.87931 -8.15847 -5.86453 0.42264 0.57733 1.33478 1.39912 1.46781 2.28730 2.54262 2.85007 3.16009 3.69194 3.83179 3.90286 4.06789 4.21173 4.30402 4.38424 4.43493 4.52340 4.54394 4.59096 4.67359 4.73584 4.95241 5.00478 5.06545 5.16289 5.25857 5.28109 5.39194 5.47249 5.56172 5.75870 6.01570 6.20087 6.27583 6.63436 6.65868 7.25971 8.18144 9.07268 Molecular weight = 251.13amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.011249 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.890128 B = 2488.540425 C = 3834.233584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.072 3.928 4 C -0.203 4.203 5 C -0.093 4.093 6 C -0.137 4.137 7 C -0.087 4.087 8 C -0.053 4.053 9 C 0.089 3.911 10 H 0.025 0.975 11 C -0.134 4.134 12 N -0.834 5.834 13 C 0.048 3.952 14 O -0.264 6.264 15 C -0.339 4.339 16 H 0.057 0.943 17 C -0.032 4.032 18 N -0.934 5.934 19 Si 0.989 3.011 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.270 1.270 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.105 0.895 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.343 0.657 35 H 0.340 0.660 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.760 12.040 -3.465 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.027 3.973 4 C -0.221 4.221 5 C -0.110 4.110 6 C -0.155 4.155 7 C -0.088 4.088 8 C -0.091 4.091 9 C -0.023 4.023 10 H 0.043 0.957 11 C -0.191 4.191 12 N -0.365 5.365 13 C 0.003 3.997 14 O -0.177 6.177 15 C -0.416 4.416 16 H 0.074 0.926 17 C -0.225 4.225 18 N -0.578 5.578 19 Si 0.812 3.188 20 H -0.185 1.185 21 H -0.202 1.202 22 H -0.195 1.195 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.124 0.876 26 H 0.171 0.829 27 H 0.182 0.818 28 H 0.168 0.832 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.092 12.017 -2.723 13.745 hybrid contribution -0.533 -1.597 -1.085 2.003 sum -6.624 10.420 -3.808 12.922 Atomic orbital electron populations 1.23289 0.77260 1.04827 1.02150 1.86256 1.22893 1.27460 1.88744 1.20063 0.92180 0.85660 0.99415 1.21401 1.00688 0.91317 1.08730 1.21263 0.94304 0.97407 0.98057 1.21112 0.93948 0.97241 1.03202 1.20298 0.96762 0.91715 1.00023 1.20323 0.90382 1.01525 0.96871 1.21218 0.95797 0.91777 0.93475 0.95728 1.21682 0.93972 1.01609 1.01865 1.58898 1.17355 1.42236 1.17973 1.18963 0.88020 0.88652 1.04044 1.83884 1.68025 1.36570 1.29214 1.20850 1.31190 1.07657 0.81916 0.92562 1.25975 0.98104 0.96558 1.01874 1.70175 1.39046 1.19949 1.28662 0.85064 0.78537 0.78163 0.77073 1.18532 1.20160 1.19501 0.91365 0.91520 0.87632 0.82920 0.81805 0.83184 0.89238 0.93755 0.92115 0.90867 0.94018 0.84485 0.84703 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.34 -15.21 10.28 -79.17 -0.81 -16.03 16 3 C 0.07 3.14 6.70 22.61 0.15 3.29 16 4 C -0.20 -6.40 9.04 22.35 0.20 -6.20 16 5 C -0.09 -2.49 10.04 22.29 0.22 -2.27 16 6 C -0.14 -4.19 8.51 22.27 0.19 -4.00 16 7 C -0.09 -3.52 4.60 -19.76 -0.09 -3.61 16 8 C -0.05 -2.11 4.72 29.85 0.14 -1.97 16 9 C 0.09 3.31 3.42 44.91 0.15 3.46 16 10 H 0.02 1.13 5.63 -2.38 -0.01 1.12 16 11 C -0.13 -4.48 9.49 71.98 0.68 -3.79 16 12 N -0.83 -24.72 9.25 -168.67 -1.56 -26.28 16 13 C 0.05 2.38 5.58 22.66 0.13 2.50 16 14 O -0.26 -15.99 8.61 -9.24 -0.08 -16.07 16 15 C -0.34 -20.23 7.94 67.92 0.54 -19.69 16 16 H 0.06 3.27 7.33 -2.91 -0.02 3.25 16 17 C -0.03 -1.88 5.49 84.83 0.47 -1.42 16 18 N -0.93 -60.13 13.67 21.61 0.30 -59.84 16 19 Si 0.99 45.98 29.55 68.60 2.03 48.00 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 24 H 0.07 1.61 7.66 -2.39 -0.02 1.59 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.15 3.68 6.30 -2.91 -0.02 3.66 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 28 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 29 H 0.09 3.02 8.05 -2.38 -0.02 3.00 16 30 H 0.04 2.10 7.68 -2.39 -0.02 2.09 16 31 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.34 8.95 9.04 -89.69 -0.81 8.14 16 35 H 0.34 10.00 7.15 -89.70 -0.64 9.36 16 36 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -76.02 301.52 3.41 -72.61 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.35 Total: 29.64 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.90 Total: -32.02 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -1.26 Total: -86.12 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.89 Total: -32.10 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.02 3.41 -72.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037727702.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.550 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds